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Conserved domains on  [gi|1483501871|gb|AYD43413|]
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flavodoxin FldA [Yersinia rochesterensis]

Protein Classification

flavodoxin( domain architecture ID 10013166)

flavodoxin is a low-potential electron donor to a number of redox enzymes; such as Escherichia coli flavodoxin 1 (FldA) that is involved in the reactivation of inactive cob(II)alamin in methionine synthase, and Azotobacter chroococcum flavodoxin B (NifF) that is the electron donor to nitrogenase

CATH:  3.40.50.360
Gene Ontology:  GO:0010181|GO:0009055
PubMed:  16465441
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 1.37e-113

flavodoxin FldA; Validated


:

Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 319.47  E-value: 1.37e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNG 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  81 KLVALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLaDDDHFVGLAIDEDRQPELTNERVSAW 160
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                         170
                  ....*....|
gi 1483501871 161 VKQISEELNL 170
Cdd:PRK09267  160 VKQIKPEFGL 169
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 1.37e-113

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 319.47  E-value: 1.37e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNG 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  81 KLVALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLaDDDHFVGLAIDEDRQPELTNERVSAW 160
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                         170
                  ....*....|
gi 1483501871 161 VKQISEELNL 170
Cdd:PRK09267  160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-168 4.82e-97

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 277.70  E-value: 4.82e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   3 TVGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNGKL 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  83 VALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTNERVSAWVK 162
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 1483501871 163 QISEEL 168
Cdd:TIGR01752 161 QIKPEF 166
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 4.30e-47

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 150.05  E-value: 4.30e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   4 VGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWyYGEAQCDWDDFFPTLEEiDFNGKLV 83
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  84 ALFGCGDQEDYAeyfcDAMGTVRDIIEPRGAAIVGhwptaGYHFEaskgladddhfvglaIDEDRQPELTNERVSAWVKQ 163
Cdd:COG0716    79 ALFGTGDSSGYG----DALGELKELLEEKGAKVVG-----GYDFE---------------GSKAPDAEDTEERAEEWLKQ 134


                  .
gi 1483501871 164 I 164
Cdd:COG0716   135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 7.48e-29

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 103.99  E-value: 7.48e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGK-----DVAEVHDIAKSSKEdLEGFDILLIGIPTWYYGEAQ------CDWDDFFPTLE 74
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEagfevDVVDLDDVDETLSE-IEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  75 EIDFNGKLVALFGCGDQEDYaeYFCDAMGTVRDIIEPRGAAIVghwptagyhfeaskgladddhFVGLAIDEDRQPELTN 154
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLE 136


                  ....*.
gi 1483501871 155 ERVSAW 160
Cdd:pfam00258 137 EAFEAW 142
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-60 1.56e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 37.92  E-value: 1.56e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYG 60
Cdd:NF038196    1 IFYFSGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWG 55
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 1.37e-113

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 319.47  E-value: 1.37e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNG 80
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  81 KLVALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLaDDDHFVGLAIDEDRQPELTNERVSAW 160
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAV-DDGKFVGLALDEDNQSELTDERIEAW 159

                         170
                  ....*....|
gi 1483501871 161 VKQISEELNL 170
Cdd:PRK09267  160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-168 4.82e-97

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 277.70  E-value: 4.82e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   3 TVGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNGKL 82
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  83 VALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTNERVSAWVK 162
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 1483501871 163 QISEEL 168
Cdd:TIGR01752 161 QIKPEF 166
PRK12359 PRK12359
flavodoxin FldB; Provisional
 4-168 2.17e-62

flavodoxin FldB; Provisional


Pssm-ID: 183471 [Multi-domain]  Cd Length: 172  Bit Score: 190.16  E-value: 2.17e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   4 VGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLV 83
Cdd:PRK12359    3 IGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  84 ALFGCGDQEDYAEYFCDAMGTVRDIIEPRGAAIVGHWPTAGYHFEASKGLADD-DHFVGLAIDEDRQPELTNERVSAWVK 162
Cdd:PRK12359   83 ALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADgQLFVGLALDEVNQYDLSDERIQQWCE 162


                  ....*.
gi 1483501871 163 QISEEL 168
Cdd:PRK12359  163 QILLEM 168
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 4.30e-47

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 150.05  E-value: 4.30e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   4 VGIFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWyYGEAQCDWDDFFPTLEEiDFNGKLV 83
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  84 ALFGCGDQEDYAeyfcDAMGTVRDIIEPRGAAIVGhwptaGYHFEaskgladddhfvglaIDEDRQPELTNERVSAWVKQ 163
Cdd:COG0716    79 ALFGTGDSSGYG----DALGELKELLEEKGAKVVG-----GYDFE---------------GSKAPDAEDTEERAEEWLKQ 134


                  .
gi 1483501871 164 I 164
Cdd:COG0716   135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 7.48e-29

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 103.99  E-value: 7.48e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGK-----DVAEVHDIAKSSKEdLEGFDILLIGIPTWYYGEAQ------CDWDDFFPTLE 74
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGEagfevDVVDLDDVDETLSE-IEEEDLLLVVVSTWGEGEPPdnakpfVDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  75 EIDFNGKLVALFGCGDQEDYaeYFCDAMGTVRDIIEPRGAAIVghwptagyhfeaskgladddhFVGLAIDEDRQPELTN 154
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLE 136


                  ....*.
gi 1483501871 155 ERVSAW 160
Cdd:pfam00258 137 EAFEAW 142
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 6-118 6.06e-21

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 83.54  E-value: 6.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQL---GKDVaEVHDIAKSSKEDLEGFDILLIGIPTWYYGE-AQCDWDDFFPTLEEIDFNGK 81
Cdd:TIGR01753   3 IVYASMTGNTEEMANIIAEGLkeaGAEV-DLLEVADADAEDLLSYDAVLLGCSTWGDEDlEQDDFEPFFEELEDIDLGGK 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1483501871  82 LVALFGCGDQEDyaeYFCDAMGTVRDIIEPRGAAIVG 118
Cdd:TIGR01753  82 KVALFGSGDWGY---EFCEAVDDWEERLKEAGATIIA 115
PRK06703 PRK06703
flavodoxin; Provisional
 1-117 5.22e-18

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 75.95  E-value: 5.22e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQKQLGKDVAEV--HDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDF 78
Cdd:PRK06703    1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVvlQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1483501871  79 NGKLVALFGCGdqeDYA-EYFCDAMGTVRDIIEPRGAAIV 117
Cdd:PRK06703   81 SGKKVAVFGSG---DTAyPLFCEAVTIFEERLVERGAELV 117
PRK07308 PRK07308
flavodoxin; Validated
 1-114 2.17e-09

flavodoxin; Validated


Pssm-ID: 180922 [Multi-domain]  Cd Length: 146  Bit Score: 53.26  E-value: 2.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQ---KQLGKDVaEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEID 77
Cdd:PRK07308    1 MALAKIVYASMTGNTEEIADIVAdklRELGHDV-DVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLD 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1483501871  78 FNGKLVALFGCGDQedYAEYFCDAMGTVRDIIEPRGA 114
Cdd:PRK07308   80 LSGKIYGVVGSGDT--FYDYFCKSVDDFEAQFALTGA 114
PRK06756 PRK06756
flavodoxin; Provisional
 1-117 1.13e-08

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 51.42  E-value: 1.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQKQLGK-----DVAEVHDIAKSSkeDLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEE 75
Cdd:PRK06756    1 MSKLVMIFASMSGNTEEMADHIAGVIREteneiEVIDIMDSPEAS--ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1483501871  76 IDFNGKLVALFGCGDQEdYAEYfcdamGTVRDII----EPRGAAIV 117
Cdd:PRK06756   79 IDLTGKKAAVFGSCDSA-YPKY-----GVAVDILieklQERGAAVV 118
PRK09271 PRK09271
flavodoxin; Provisional
 10-101 1.07e-07

flavodoxin; Provisional


Pssm-ID: 181744  Cd Length: 160  Bit Score: 49.03  E-value: 1.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  10 SDTGNTENIAKMIQKQLGKDVAEVH----DIAKSSKE--DLEGFDILLIGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLV 83
Cdd:PRK09271    9 SLSGNTREVAREIEERCEEAGHEVDwvetDVQTLAEYplDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNV 88

                          90
                  ....*....|....*...
gi 1483501871  84 ALFGCGDQEDYAEYFCDA 101
Cdd:PRK09271   89 AVFGTGETQWGEEYYCGA 106
PRK05568 PRK05568
flavodoxin; Provisional
 1-87 5.59e-07

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 46.73  E-value: 5.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   1 MATVGIFFGSDTGNTENIAKMIQ---KQLGKDVAEVHdIAKSSKEDLEGFDILLIGIPTwyYGEAQCDWDDFFPTLEEI- 76
Cdd:PRK05568    1 MKKINIIYWSGTGNTEAMANLIAegaKENGAEVKLLN-VSEASVDDVKGADVVALGSPA--MGDEVLEEGEMEPFVESIs 77

                          90
                  ....*....|..
gi 1483501871  77 -DFNGKLVALFG 87
Cdd:PRK05568   78 sLVKGKKLVLFG 89
NorV COG0426
Flavorubredoxin [Energy production and conversion];
3-89 1.77e-06

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 46.75  E-value: 1.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   3 TVGIFFGSDTGNTENIAKMIQKQL---GKDVaEVHDIAKSSK----EDLEGFDILLIGIPTwYYGEAQCDWDDFFPTLEE 75
Cdd:COG0426   248 KVVIVYASMYGNTEKMAEAIAEGLteeGVKV-KLYDLEKTDPseiiTEIFDAKGIVIGSPT-YNGGAFPPIADLLGYLKG 325

                          90
                  ....*....|....
gi 1483501871  76 IDFNGKLVALFGCG 89
Cdd:COG0426   326 LAPKNKLAGAFGSY 339
Flavodoxin_5 pfam12724
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins ...
 6-89 8.97e-06

Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 463681 [Multi-domain]  Cd Length: 144  Bit Score: 43.41  E-value: 8.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGK--DVAEVHDIAKSskEDLEGFDILLIGIPTwYYGEAQCDWDDFFpTLEEIDFNGKLV 83
Cdd:pfam12724   2 ILYSSRDGQTKKIAERIAEELREegELVDVEDVEAG--EDLSSYDAVVIGASI-YYGKHLPELRQFV-TKHRDELSSKPV 77


                  ....*.
gi 1483501871  84 ALFGCG 89
Cdd:pfam12724  78 AFFSVN 83
PRK07116 PRK07116
flavodoxin; Provisional
 7-86 8.76e-05

flavodoxin; Provisional


Pssm-ID: 180850  Cd Length: 160  Bit Score: 40.81  E-value: 8.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   7 FFgSDTGNTENIAKMIQKQLGKDVAEV-------------HDiaKSSK------------------EDLEGFDILLIGIP 55
Cdd:PRK07116    9 YF-SATGTTKKVAEKLAEVTGADLFEIkpeqpytaadldwND--KKSRssvemadkssrpaiakkiENIAEYDVIFLGFP 85

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1483501871  56 TWYYGEaqcdwddffPT-----LEEIDFNGKLVALF 86
Cdd:PRK07116   86 IWWYVA---------PRiintfLESYDFSGKTVIPF 112
PRK06934 PRK06934
flavodoxin; Provisional
 2-81 1.39e-04

flavodoxin; Provisional


Pssm-ID: 180760 [Multi-domain]  Cd Length: 221  Bit Score: 40.66  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   2 ATVGIFFGSDTGNTENIAKMIQKQLGKDV---------AEVHD----------------IAKSSKEDLEGFDILLIGIPT 56
Cdd:PRK06934   60 ASILQKNGEVLGSTQYVAQIIQEETGGDLfrietvkpyPRQHDpllkyaeqevkeggrpEMREKIQNLADYDQIFIGYPI 139

                          90       100
                  ....*....|....*....|....*
gi 1483501871  57 WYYgEAQCDWDDFFptlEEIDFNGK 81
Cdd:PRK06934  140 WWY-KMPMVMYSFF---EQHDFSGK 160
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
 6-108 8.26e-04

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 38.98  E-value: 8.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGKD--VAEVHDIAKSSKEDLEGFDILLIGIPTWYYGEAQCDWDDFF--------PTLEE 75
Cdd:COG0369    31 ILYGSQTGNAEGLAEQLAERAKAAglAVTLASLDDYKPKDLAKEGLLLIVTSTYGEGEPPDNARAFYeflhskkaPKLDG 110

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1483501871  76 IDFngklvALFGCGDQeDYaEYFCdamGTVRDI 108
Cdd:COG0369   111 LRY-----AVLGLGDS-SY-ETFC---QTGKDF 133
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-60 1.56e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 37.92  E-value: 1.56e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1483501871   6 IFFGSDTGNTENIAKMIQKQLGKDVAEVHDIAKSSKEDLEGFDILLIGIPTWYYG 60
Cdd:NF038196    1 IFYFSGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWG 55
PRK06242 PRK06242
flavodoxin; Provisional
 13-127 1.87e-03

flavodoxin; Provisional


Pssm-ID: 180484 [Multi-domain]  Cd Length: 150  Bit Score: 36.82  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1483501871  13 GNTENIAKMIQKQLGkdvAEVHDIAKSSKEDLEGFDilLI----GIptwYYGEAQCDWDDFFPTLEEIDfnGKLVALFG- 87
Cdd:PRK06242   13 GNTEKIAKAIAEVLD---AEVIDPGDVNPEDLSEYD--LIgfgsGI---YFGKFHKSLLKLIEKLPPVS--GKKAFIFSt 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1483501871  88 CGDQedyaeyFCDAMGTVRDIIEPRGAAIVGHWPTAGYHF 127
Cdd:PRK06242   83 SGLP------FLKYHKALKKKLKEKGFEIVGEFSCKGFDT 116
HemG COG4635
Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport ...
 2-60 7.97e-03

Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport and metabolism];


Pssm-ID: 443673  Cd Length: 179  Bit Score: 35.26  E-value: 7.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1483501871   2 ATVGIFFGSDTGNTENIAKMIQKQL---GKDVaEVHDIAKSSKEDLEGFDILLIGIPTwYYG 60
Cdd:COG4635     1 MKVLILYASRDGQTRKIAERIAEVLreaGHDV-DLVDLEDAPDLDLAGYDAVVIGASI-RYG 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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