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Conserved domains on  [gi|1480123669|gb|AYA77606|]
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transcriptional regulator [Bacillus sp. Y1]

Protein Classification

XRE family transcriptional regulator( domain architecture ID 10055338)

XRE (Xenobiotic Response Element) family transcriptional regulator contains a DNA-binding helix-turn-helix domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-63 7.93e-21

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


:

Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 79.27  E-value: 7.93e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKELLG 63
Cdd:COG1396     7 ALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRR-NPSLETLLKLAKALGVSLDELLG 68
Cullin_binding super family cl04154
Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ...
 60-105 2.33e-03

Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ligase complex for neddylation. Neddylation is the process by which the C-terminal glycine of the ubiquitin-like protein Nedd8 is covalently linked to lysine residues in a protein through an isopeptide bond. The structure of this domain is composed entirely of alpha helices.


The actual alignment was detected with superfamily member pfam03556:

Pssm-ID: 460971  Cd Length: 117  Bit Score: 34.87  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1480123669  60 ELLGTGNDVKGPQLDSeWVDFVRELRDSGVEKDQiqeYKMLLDFIK 105
Cdd:pfam03556  49 KLLLGGRFRIFPLLDL-WIEFLEEEKKVKISKDT---WNMFLEFAR 90
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-63 7.93e-21

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 79.27  E-value: 7.93e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKELLG 63
Cdd:COG1396     7 ALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRR-NPSLETLLKLAKALGVSLDELLG 68
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 3-61 1.07e-15

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 65.65  E-value: 1.07e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1480123669   3 GKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKEL 61
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENG-KRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
5-61 4.41e-14

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 61.38  E-value: 4.41e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1480123669    5 NIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKEL 61
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENG-KRKPSLETLKKLAKALGVSLDEL 56
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 6-61 2.52e-12

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 56.78  E-value: 2.52e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   6 IYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKEL 61
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKR-EPSLETLKKLAEALGVSLDEL 55
PRK13890 PRK13890
conjugal transfer protein TrbA; Provisional
 5-62 1.47e-09

conjugal transfer protein TrbA; Provisional


Pssm-ID: 237547 [Multi-domain]  Cd Length: 120  Bit Score: 51.29  E-value: 1.47e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1480123669   5 NIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKELL 62
Cdd:PRK13890    9 NVLRLLDERHMTKKELSERSGVSISFLSDLTTG-KANPSLKVMEAIADALETPLPLLL 65
Cullin_binding pfam03556
Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ...
 60-105 2.33e-03

Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ligase complex for neddylation. Neddylation is the process by which the C-terminal glycine of the ubiquitin-like protein Nedd8 is covalently linked to lysine residues in a protein through an isopeptide bond. The structure of this domain is composed entirely of alpha helices.


Pssm-ID: 460971  Cd Length: 117  Bit Score: 34.87  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1480123669  60 ELLGTGNDVKGPQLDSeWVDFVRELRDSGVEKDQiqeYKMLLDFIK 105
Cdd:pfam03556  49 KLLLGGRFRIFPLLDL-WIEFLEEEKKVKISKDT---WNMFLEFAR 90
couple_hipB TIGR03070
transcriptional regulator, y4mF family; Members of this family belong to a clade of ...
 1-56 2.52e-03

transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]


Pssm-ID: 213767 [Multi-domain]  Cd Length: 58  Bit Score: 33.79  E-value: 2.52e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIErnlNQNPSINvIEKIASVLEV 56
Cdd:TIGR03070   2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLE---NGKPTVR-LDKVLRVLDA 53
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
1-63 7.93e-21

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 79.27  E-value: 7.93e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKELLG 63
Cdd:COG1396     7 ALGERLRELRKARGLTQEELAERLGVSRSTISRIERGRR-NPSLETLLKLAKALGVSLDELLG 68
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
1-63 1.03e-15

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 66.02  E-value: 1.03e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKELLG 63
Cdd:COG1476     4 KLGNRLKELRKERGLTQEELAELLGVSRQTISAIENG-KYNPSLELALKIARALGVSLEELFS 65
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 3-61 1.07e-15

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 65.65  E-value: 1.07e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1480123669   3 GKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKEL 61
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENG-KRNPSLETLEKLAKALGVSLDEL 58
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
5-61 4.41e-14

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 61.38  E-value: 4.41e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1480123669    5 NIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKEL 61
Cdd:smart00530   1 RLKELREEKGLTQEELAEKLGVSRSTLSRIENG-KRKPSLETLKKLAKALGVSLDEL 56
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 2-60 1.32e-12

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 58.03  E-value: 1.32e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1480123669   2 IGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKE 60
Cdd:COG1813    13 YGERIREAREARGLSQEELAEKLGVSESTIRRIERG-EATPSLDTLRKLEKALGISLAE 70
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 6-61 2.52e-12

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 56.78  E-value: 2.52e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   6 IYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKEL 61
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKR-EPSLETLKKLAEALGVSLDEL 55
YozG COG3655
DNA-binding transcriptional regulator, XRE family [Transcription];
1-62 6.03e-10

DNA-binding transcriptional regulator, XRE family [Transcription];


Pssm-ID: 442872 [Multi-domain]  Cd Length: 69  Bit Score: 51.30  E-value: 6.03e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNQNPSINVIEKIASVLEVDLKELL 62
Cdd:COG3655     1 MIYVKLDELLAERGMTKKELAEATGISRATLSRLKNGKAKAVRLDTLEKICKALDCQPGDLL 62
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 10-57 6.17e-10

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 50.99  E-value: 6.17e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1480123669  10 RKRRGLTLTELADRAGIAKSYLSNIERNLNQNPSINVIEKIASVLEVD 57
Cdd:pfam13560  10 RERAGLSQEALARRLGVSRSTLSRLETGRRGRPSPAVVERLARALGVD 57
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 3-62 6.78e-10

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 50.75  E-value: 6.78e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1480123669   3 GKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKELL 62
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENG-KSVPPAETLYKIAELLGVPANWLL 59
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 2-62 1.21e-09

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 51.17  E-value: 1.21e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1480123669   2 IGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKELL 62
Cdd:COG3620    18 LGEALRLMRKELGLSQLPVAELVGVSQSDILRIESG-KRDPTVSTLEKIAEALGKELSAVL 77
PRK13890 PRK13890
conjugal transfer protein TrbA; Provisional
 5-62 1.47e-09

conjugal transfer protein TrbA; Provisional


Pssm-ID: 237547 [Multi-domain]  Cd Length: 120  Bit Score: 51.29  E-value: 1.47e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1480123669   5 NIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKELL 62
Cdd:PRK13890    9 NVLRLLDERHMTKKELSERSGVSISFLSDLTTG-KANPSLKVMEAIADALETPLPLLL 65
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 2-62 3.02e-09

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 49.42  E-value: 3.02e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   2 IGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIER-NLNQNPS----INVIEKIASVLEVDLKELL 62
Cdd:COG1426     6 IGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEgDFDALPGpvyvRGFLRSYARALGLDPEELL 71
HTH_26 pfam13443
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ...
 5-62 1.77e-08

Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433211 [Multi-domain]  Cd Length: 63  Bit Score: 47.15  E-value: 1.77e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1480123669   5 NIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNQNPSINVIEKIASVLEVDLKELL 62
Cdd:pfam13443   1 KLRKLMADRGISKSDLARATGISRATLSRLRKGKPKRVSLDTLDKICDALGCQPGDLL 58
PRK08154 PRK08154
anaerobic benzoate catabolism transcriptional regulator; Reviewed
 1-101 1.01e-07

anaerobic benzoate catabolism transcriptional regulator; Reviewed


Pssm-ID: 236167 [Multi-domain]  Cd Length: 309  Bit Score: 48.41  E-value: 1.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNLNqNPSINVIEKIASVLEVDLKELLGtgnDVKGPQldSEWVdF 80
Cdd:PRK08154   28 ALGERVRTLRARRGMSRKVLAQASGVSERYLAQLESGQG-NVSILLLRRVARALGCSLADLLG---DVDTSS--PDWL-L 100

                          90       100
                  ....*....|....*....|.
gi 1480123669  81 VRELRDsGVEKDQIQEYKMLL 101
Cdd:PRK08154  101 IRELLE-QASPAQLARVRDAL 120
PRK09943 PRK09943
HTH-type transcriptional regulator PuuR;
1-60 3.52e-07

HTH-type transcriptional regulator PuuR;


Pssm-ID: 182158 [Multi-domain]  Cd Length: 185  Bit Score: 46.33  E-value: 3.52e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDLKE 60
Cdd:PRK09943    7 APGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQD-KVSPAISTLQKLLKVYGLSLSE 65
PRK09726 PRK09726
type II toxin-antitoxin system antitoxin HipB;
9-56 1.15e-03

type II toxin-antitoxin system antitoxin HipB;


Pssm-ID: 182049  Cd Length: 88  Bit Score: 35.34  E-value: 1.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1480123669   9 IRKRRGLTLTELADRAGIAKSYLSNIErNLNQNPSINVIEKIASVLEV 56
Cdd:PRK09726   20 VRQQNGWTQSELAKKIGIKQATISNFE-NNPDNTTLTTFFKILQSLEL 66
COG1395 COG1395
Predicted transcriptional regulator [Transcription];
8-58 2.10e-03

Predicted transcriptional regulator [Transcription];


Pssm-ID: 441005 [Multi-domain]  Cd Length: 313  Bit Score: 35.97  E-value: 2.10e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1480123669   8 EIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDL 58
Cdd:COG1395   134 ELREERGLSLGELASELGVSRRTISKYERG-EMDASIEVALKLEEILGEPI 183
Cullin_binding pfam03556
Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ...
 60-105 2.33e-03

Cullin binding; This domain binds to cullins and to Rbx-1, components of an E3 ubiquitin ligase complex for neddylation. Neddylation is the process by which the C-terminal glycine of the ubiquitin-like protein Nedd8 is covalently linked to lysine residues in a protein through an isopeptide bond. The structure of this domain is composed entirely of alpha helices.


Pssm-ID: 460971  Cd Length: 117  Bit Score: 34.87  E-value: 2.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1480123669  60 ELLGTGNDVKGPQLDSeWVDFVRELRDSGVEKDQiqeYKMLLDFIK 105
Cdd:pfam03556  49 KLLLGGRFRIFPLLDL-WIEFLEEEKKVKISKDT---WNMFLEFAR 90
couple_hipB TIGR03070
transcriptional regulator, y4mF family; Members of this family belong to a clade of ...
 1-56 2.52e-03

transcriptional regulator, y4mF family; Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions]


Pssm-ID: 213767 [Multi-domain]  Cd Length: 58  Bit Score: 33.79  E-value: 2.52e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   1 MIGKNIYEIRKRRGLTLTELADRAGIAKSYLSNIErnlNQNPSINvIEKIASVLEV 56
Cdd:TIGR03070   2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLE---NGKPTVR-LDKVLRVLDA 53
SinI pfam08671
Anti-repressor SinI; SinR is a pleiotropic regulator of several late growth processes. It is a ...
 73-97 4.43e-03

Anti-repressor SinI; SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.


Pssm-ID: 400831  Cd Length: 28  Bit Score: 32.39  E-value: 4.43e-03
                          10        20
                  ....*....|....*....|....*
gi 1480123669  73 LDSEWVDFVRELRDSGVEKDQIQEY 97
Cdd:pfam08671   1 LDEEWVELIKEAMESGLSKEEFREF 25
PRK04140 PRK04140
transcriptional regulator;
3-58 4.49e-03

transcriptional regulator;


Pssm-ID: 235224 [Multi-domain]  Cd Length: 317  Bit Score: 35.22  E-value: 4.49e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1480123669   3 GKNIYEIRKRRGLTLTELADRAGIAKSYLSNIERNlNQNPSINVIEKIASVLEVDL 58
Cdd:PRK04140  128 GDVLREAREELGLSLGELASELGVSRRTISKYENG-GMNASIEVAIKLEEILDVPL 182
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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