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Conserved domains on  [gi|1411189958|gb|AWX65431|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Grallaricula lineifrons]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 8.75e-54

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 163.94  E-value: 8.75e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  81 QLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 8.75e-54

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 163.94  E-value: 8.75e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  81 QLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-113 1.69e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.04  E-value: 1.69e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958  21 LNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLESPLYTFTWTSIVILLLT 100
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEV-VFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 1411189958 101 LGLMYEWTQGGLE 113
Cdd:pfam00507  82 VGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 1.98e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 1.98e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   4 ITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLE 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEV-VFLFPWAVVFRE 86

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1411189958  84 SPLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:COG0838    87 LGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 8.75e-54

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 163.94  E-value: 8.75e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  81 QLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 6.26e-49

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 151.57  E-value: 6.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   2 NMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQ 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1411189958  82 LESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWA 115
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 7.95e-49

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 151.30  E-value: 7.95e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   3 MITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQL 82
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1411189958  83 ESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 1.24e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.47  E-value: 1.24e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  81 QLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 1.31e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 117.73  E-value: 1.31e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMItFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00106    1 MNLM-LTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  81 QLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 1.43e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 107.68  E-value: 1.43e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAL 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1411189958  81 QLESPlyTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00203   81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
21-113 1.69e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.04  E-value: 1.69e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958  21 LNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLESPLYTFTWTSIVILLLT 100
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEV-VFLFPWAVSFRELGWFGFVEMLIFIAILL 81

                          90
                  ....*....|...
gi 1411189958 101 LGLMYEWTQGGLE 113
Cdd:pfam00507  82 VGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.60e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 99.16  E-value: 3.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQ-TNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKrSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1411189958  80 LQLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 2.47e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 91.76  E-value: 2.47e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   3 MITFMLTLSMSLSITLTMLNSWLAQTNP-DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQ 81
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1411189958  82 LESPLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-114 5.38e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 90.92  E-value: 5.38e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   4 ITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQLE 83
Cdd:MTH00055    8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1411189958  84 SPLYtfTWTSIVIL-LLTLGLMYEWTQGGLEW 114
Cdd:MTH00055   88 GLFG--FWVMYLFLiILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-114 1.89e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 89.35  E-value: 1.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   4 ITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQLE 83
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1411189958  84 SPlYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00018   83 AP-FGFWTMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 3.66e-24

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 89.15  E-value: 3.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   8 LTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLESPLY 87
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEA-AFLFPWAVSFREIGWL 93

                          90       100
                  ....*....|....*....|....*...
gi 1411189958  88 TFTWTSIVILLLTLGLMYEWTQGGLEWA 115
Cdd:PRK06602   94 GFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 1.98e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.10  E-value: 1.98e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   4 ITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLE 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEV-VFLFPWAVVFRE 86

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1411189958  84 SPLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:COG0838    87 LGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 3.98e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.50  E-value: 3.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWL-AQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1411189958  80 LQLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWAE 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 6.21e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 83.37  E-value: 6.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLA-QTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 79
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAaRSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1411189958  80 LQLESPLYTFTWTSIVILLLTLGLMYEWTQGGLEWA 115
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 14-114 1.49e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 79.98  E-value: 1.49e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958  14 LSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIaLLLPLPWALQLESPLYTFTWTS 93
Cdd:MTH00030   23 VSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEI-SFLFPWSIVFNQLNLFSFWIVY 101

                          90       100
                  ....*....|....*....|.
gi 1411189958  94 IVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00030  102 TFLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 8-114 5.46e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.69  E-value: 5.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   8 LTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEiALLLPLPWALQLESPLY 87
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVE-TVFLYPWAMSFDVLGVS 92

                          90       100
                  ....*....|....*....|....*..
gi 1411189958  88 TFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:CHL00022   93 AFIEALIFVLILIVGLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 4-114 1.20e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.60  E-value: 1.20e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   4 ITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLP--FSIRFFLVAILFLLFDLEIALLLPLPWALq 81
Cdd:PRK07928    7 ILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSF- 85

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1411189958  82 leSPLYTFTWTSIVILLLTLGL--MYEWTQGGLEW 114
Cdd:PRK07928   86 --DALGVFGLVEMALFMLTVFVayAYVWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
3-114 1.61e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 51.28  E-value: 1.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   3 MITFM-LTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEiALLLPLPWALQ 81
Cdd:PRK07756   10 MIVLIfLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVE-TLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1411189958  82 LESPLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:PRK07756   89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
6-114 7.71e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 49.67  E-value: 7.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   6 FMLTLSMSLSITLTMLNSW----LAQTNPDSEKLSPYECGFDPLGSARlPFSIRFFLVAILFLLFDLEIALLLPLPWALQ 81
Cdd:PRK08489   15 VLLVLTFVAFFLTTRLARFisrkLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFK 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1411189958  82 LESpLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:PRK08489   94 LLG-LFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 1.34e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.03  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411189958   1 MNMITFMLTLSMSLSITLTMLNSWLAQTNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWal 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV-- 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1411189958  81 qleSPLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00092   79 ---SDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-114 3.88e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.49  E-value: 3.88e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1411189958  36 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWALQLespLYTFTWTSIVILLLTLGLMYEWTQGGLEW 114
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLL---FYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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