|
Name |
Accession |
Description |
Interval |
E-value |
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
1-1015 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 1099.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 1 MILSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNI 80
Cdd:COG0841 1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 81 QSTSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSDRYSRLELVELVEQL 160
Cdd:COG0841 81 TSTSSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSDDLDELELSDYAERN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:COG0841 161 IKDRLERVPGVGQVQIFGGReREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGGDREYTVRTNGRLKTPEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:COG0841 241 ENIVIRTNDGSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLPEGVELTIVY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINIltllalvlavglvvD 399
Cdd:COG0841 321 DQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNIltlfalvlaigivvD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTL 479
Cdd:COG0841 401 DAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIALLISLFVALTL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 480 TPMLCSRVLHPVKvvngVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAED 559
Cdd:COG0841 481 TPALCARLLKPHP----KGKKGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPTEFFPEED 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 560 RGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDGG------RAWIYTTLVPWEDRKRKTQDVSADLRR 633
Cdd:COG0841 557 QGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFSGggsgsnSGTIFVTLKPWDERDRSADEIIARLRE 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 634 QFArEVTGGQAIVSAVRSFGGGRGaAGVTMVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKA 713
Cdd:COG0841 637 KLA-KIPGARVFVFQPPAGGLGSG-APIEVQLQGDDLEELAAAAEKLLAALRQIPGLVDVRSDLQLGKPELQLDIDREKA 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 714 ADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESY 793
Cdd:COG0841 715 AALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMVPLSSVATIEEGTGPSSI 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 794 RHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADL-LTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFES 872
Cdd:COG0841 795 NRYNGQRSVTVSANLAPGVSLGEALAAIEELAAELkLPPGVSIEFTGQAEEEQESFSSLGLAFLLALLLVYLVLAAQFES 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 873 WIHPVTIFSGVVLAIAGGLMVLWSTRfwfatpMTDNLFSRFGLIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSAT 952
Cdd:COG0841 875 FIQPLIILLTVPLALIGALLGLLLTG------TPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILEAAR 948
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387289088 953 IRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDRI 1015
Cdd:COG0841 949 LRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDRL 1011
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
4-1014 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 862.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 4 SDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQST 83
Cdd:NF033617 1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 84 SQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIIT-KADPDATPVITLSFNSDRYSRLELVELVEQLAI 162
Cdd:NF033617 81 SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYrKANSADTPIMYIGLTSEEMPRGQLTDYAERVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 163 QRIQTVPGVGSVTVRG-PRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDFEN 241
Cdd:NF033617 161 PKLSQINGVGSVDVSGgQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDSVVSTVRANDQLKTAEDYED 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 242 LVL-VTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAFD 320
Cdd:NF033617 241 LVIkYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQETLPKNIKVNVLYD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 321 NSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVDD 400
Cdd:NF033617 321 RTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 401 AIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTLT 480
Cdd:NF033617 401 AIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAGAVIISGIVALTLT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 481 PMLCSRVL--HPvkvvngvkKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAE 558
Cdd:NF033617 481 PMMCSRLLkaNE--------KPGRFARAVDRFFDGLTARYGRGLKWVLKHRPLTLVVALATLALLPLLYVFIPKELAPSE 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 559 DRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDGG-----RAWIYTTLVPWEDRKRKTQDVSADLRR 633
Cdd:NF033617 553 DRGVIFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGVGGnpgdnTGFGIINLKPWDERDVSAQEIIDRLRP 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 634 QFArEVTGGQAIVSAVRS-FGGGRGAAGVTMVLL-GSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRA 711
Cdd:NF033617 633 KLA-KVPGMDLFLFPLQDlPGGAGSSLPQYQVTLtPSDYDSLFTWAEKLKEKLRKSPQFADVDSDLQDKGPELNVDIDRD 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 712 KAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAE 791
Cdd:NF033617 712 KAARLGISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIYVRSNDGKLVPLSTLAKIEERAAPL 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 792 SYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADLLTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFE 871
Cdd:NF033617 792 SLNHFNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEEGSSLLFLFLLALAAIYLVLAIQYE 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 872 SWIHPVTIFSGVVLAIAGGLMVLWstrfWFATPMtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQIE-GKDAFTAAFQS 950
Cdd:NF033617 872 SFVDPLTILSTVPLAGCGALLALA----LGGQSM--NIYAQIGLITLIGLVKKNGILMVEFANELQRHqGLSRREAIYQA 945
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387289088 951 ATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:NF033617 946 AALRLRPILMTTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLAR 1009
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
3-1013 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 821.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 3 LSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQS 82
Cdd:pfam00873 1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 83 TSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSD--RYSRLELVELVEQL 160
Cdd:pfam00873 81 QSSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPdgSYTQTDLRDYADTN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:pfam00873 161 IKPQLSRVPGVGDVQLFGGSeYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQGQLQSAEDF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:pfam00873 241 EKIIVKNQDGSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQGVEIVVVY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVD 399
Cdd:pfam00873 321 DTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEH-GENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALT 478
Cdd:pfam00873 401 DAIVVVENIERVLEEnGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAILLSVLVALT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 479 LTPMLCSRVLHPVKvvngVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAE 558
Cdd:pfam00873 481 LTPALCATLLKPRR----EPKHGGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTEFLPEE 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 559 DRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDG--------GRAWIYTTLVPWEDRKRKTQDVSAD 630
Cdd:pfam00873 557 DEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFAfsgdnngpNSGDAFISLKPWKERPGPEKSVQAL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 631 LRRQFA--REVTGGQAIVSAVRSFGGGRGAAGVTM----VLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQL 704
Cdd:pfam00873 637 IERLRKalKQIPGANVFLFQPIQLRGLGTISGFRSdlqvKIFGDDLDALDEARNQILAALAQLPGLSDVRSDGQEDQPQL 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 705 QLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSW 784
Cdd:pfam00873 717 QVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMIPLSAFAKI 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 785 TEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADL-LTPGYTIAWDGETREYIESGNDTYMLFGLALLFTF 863
Cdd:pfam00873 797 EWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQVkLPPGYGYTWTGQFEQEQLAGNSLPILIALALLVVF 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 864 LILAAQFESWIHPVTIFSGVVLAIAGGLMVLWstrfWFATPMtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQ-IEGKD 942
Cdd:pfam00873 877 LVLAALYESWSDPLSIMLTVPLALVGALLALW----LRGLPN--SVYAQVGLILLIGLAVKNAILMVEFANELReQEGKS 950
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387289088 943 AFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLD 1013
Cdd:pfam00873 951 LEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLFH 1021
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
8-1015 |
0e+00 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 667.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:TIGR00915 6 IDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSSSSDSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 -SSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIIT--KADPDATPVITLSFNSDRYSRLELVELVEQLAIQR 164
Cdd:TIGR00915 86 gSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRveKASSNFLMVIGLVSDDGSMTKEDLSDYAASNMVDP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 165 IQTVPGVGSVTVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRI------ESSAREFPLRMEGRMQEVVD 238
Cdd:TIGR00915 166 LSRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLgglpavPGQQLNATIIAQTRLQTPEQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 239 FENLVLVTRGD-YQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQV 317
Cdd:TIGR00915 246 FENILLKVNTDgSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQGMKYVY 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 318 AFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLV 397
Cdd:TIGR00915 326 PYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 398 VDDAIVVLENIYRRM-EHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVA 476
Cdd:TIGR00915 406 VDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVA 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 477 LTLTPMLCSRVLHPVkvvngvkKHGWLYDKTEPFFVWFNKC-------YERLLRVATNNKALVLLAALAFSCAGFWLYTK 549
Cdd:TIGR00915 486 LILTPALCATMLKPI-------EKGEHHEKKGGFFGWFNRMfdssthgYENGVGKILRRRGRYLLVYVLLVGGMVFLFVR 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 550 LQRELTPAEDRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVP--EIDRTYHRTGDG--GR----AWIYTTLVPWEDRK 621
Cdd:TIGR00915 559 LPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKYLLAKEkaNVESVFTVNGFSfaGRgqnmGMAFIRLKDWEERT 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 622 RKTQDVSADLRRQFAREVTGGQAIV-----SAVRSFGggrGAAGVTMVL---LGSEFNELQRLGALFVKDMLESGHFVQP 693
Cdd:TIGR00915 639 GKENSVFAIAGRATGHFMQIKDAMViafvpPAILELG---NATGFDFFLqdrAGLGHEALLQARNQLLGLAAQNPALTRV 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 694 RVDPSPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEG 773
Cdd:TIGR00915 716 RPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINKWYVRNASG 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 774 NLVQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLnARGADLLTPGYTIAWDGETREYIESGNDTYM 853
Cdd:TIGR00915 796 EMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAM-EAIAQKLPPGFGFSWTGMSYEERLSGSQAPA 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 854 LFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWSTRFwfatpmTDNLFSRFGLIMLIGLVAKNGILIVEFA 933
Cdd:TIGR00915 875 LYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGL------SNDVYFQVGLLTTIGLSAKNAILIVEFA 948
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 934 NQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLD 1013
Cdd:TIGR00915 949 KELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVR 1028
|
..
gi 1387289088 1014 RI 1015
Cdd:TIGR00915 1029 RL 1030
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
1-1014 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 612.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 1 MILSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNI 80
Cdd:PRK09579 1 MAFTDPFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 81 QSTSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSDRYSRLELVELVEQL 160
Cdd:PRK09579 81 TSVSRQNFSIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISFYSEEMSNPQITDYLSRV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:PRK09579 161 IQPKLATLPGMAEAEILGNQvFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTSINASTELKSAEAF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:PRK09579 241 AAIPVKTSGDSRVLLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPPNLKVSIAY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVD 399
Cdd:PRK09579 321 DATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTL 479
Cdd:PRK09579 401 DAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 480 TPMLCSRVLHPVKVVNGvkkhgwLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAED 559
Cdd:PRK09579 481 SPMMCALLLRHEENPSG------LAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEED 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 560 RGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTG-DGGRAWIYTTLV-PWEDRKRKTQDVSADLRRQFaR 637
Cdd:PRK09579 555 QGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQINGfNGVQSGIGGFLLkPWNERERTQMELLPLVQAKL-E 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 638 EVTGGQAIVSAVRSF-GGGRGAAGVTMVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKAADM 716
Cdd:PRK09579 634 EIPGLQIFGFNLPSLpGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQM 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 717 RVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESYRHF 796
Cdd:PRK09579 714 GVSMQDLGGTLATLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQF 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 797 DRMRSVVVSSqlSPGFTIGDAVDYLNARGADLLTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFESWIHP 876
Cdd:PRK09579 794 QQLNSAIISG--FPIVSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDP 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 877 VTIFSGVVLAIAGGLMVL---WSTRfwfatpmtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQIE-GKDAFTAAFQSAT 952
Cdd:PRK09579 872 LVILVTVPLSICGALIPLflgVSSM---------NIYTQVGLVTLIGLISKHGILIVEFANQLRHEqGLSRREAIEEAAA 942
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387289088 953 IRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:PRK09579 943 IRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAK 1004
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
1-1015 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 1099.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 1 MILSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNI 80
Cdd:COG0841 1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 81 QSTSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSDRYSRLELVELVEQL 160
Cdd:COG0841 81 TSTSSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSDDLDELELSDYAERN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:COG0841 161 IKDRLERVPGVGQVQIFGGReREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGGDREYTVRTNGRLKTPEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:COG0841 241 ENIVIRTNDGSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLPEGVELTIVY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINIltllalvlavglvvD 399
Cdd:COG0841 321 DQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNIltlfalvlaigivvD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTL 479
Cdd:COG0841 401 DAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIALLISLFVALTL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 480 TPMLCSRVLHPVKvvngVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAED 559
Cdd:COG0841 481 TPALCARLLKPHP----KGKKGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPTEFFPEED 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 560 RGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDGG------RAWIYTTLVPWEDRKRKTQDVSADLRR 633
Cdd:COG0841 557 QGQIIVSVQLPPGTSLERTEAVVRQVEEILLEVPEVESVFSVVGFSGggsgsnSGTIFVTLKPWDERDRSADEIIARLRE 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 634 QFArEVTGGQAIVSAVRSFGGGRGaAGVTMVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKA 713
Cdd:COG0841 637 KLA-KIPGARVFVFQPPAGGLGSG-APIEVQLQGDDLEELAAAAEKLLAALRQIPGLVDVRSDLQLGKPELQLDIDREKA 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 714 ADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESY 793
Cdd:COG0841 715 AALGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMVPLSSVATIEEGTGPSSI 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 794 RHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADL-LTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFES 872
Cdd:COG0841 795 NRYNGQRSVTVSANLAPGVSLGEALAAIEELAAELkLPPGVSIEFTGQAEEEQESFSSLGLAFLLALLLVYLVLAAQFES 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 873 WIHPVTIFSGVVLAIAGGLMVLWSTRfwfatpMTDNLFSRFGLIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSAT 952
Cdd:COG0841 875 FIQPLIILLTVPLALIGALLGLLLTG------TPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILEAAR 948
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1387289088 953 IRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDRI 1015
Cdd:COG0841 949 LRLRPILMTSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDRL 1011
|
|
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
4-1014 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 862.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 4 SDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQST 83
Cdd:NF033617 1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 84 SQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIIT-KADPDATPVITLSFNSDRYSRLELVELVEQLAI 162
Cdd:NF033617 81 SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYrKANSADTPIMYIGLTSEEMPRGQLTDYAERVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 163 QRIQTVPGVGSVTVRG-PRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDFEN 241
Cdd:NF033617 161 PKLSQINGVGSVDVSGgQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDSVVSTVRANDQLKTAEDYED 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 242 LVL-VTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAFD 320
Cdd:NF033617 241 LVIkYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQETLPKNIKVNVLYD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 321 NSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVDD 400
Cdd:NF033617 321 RTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 401 AIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTLT 480
Cdd:NF033617 401 AIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAGAVIISGIVALTLT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 481 PMLCSRVL--HPvkvvngvkKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAE 558
Cdd:NF033617 481 PMMCSRLLkaNE--------KPGRFARAVDRFFDGLTARYGRGLKWVLKHRPLTLVVALATLALLPLLYVFIPKELAPSE 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 559 DRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDGG-----RAWIYTTLVPWEDRKRKTQDVSADLRR 633
Cdd:NF033617 553 DRGVIFGMIQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGVGGnpgdnTGFGIINLKPWDERDVSAQEIIDRLRP 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 634 QFArEVTGGQAIVSAVRS-FGGGRGAAGVTMVLL-GSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRA 711
Cdd:NF033617 633 KLA-KVPGMDLFLFPLQDlPGGAGSSLPQYQVTLtPSDYDSLFTWAEKLKEKLRKSPQFADVDSDLQDKGPELNVDIDRD 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 712 KAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAE 791
Cdd:NF033617 712 KAARLGISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIYVRSNDGKLVPLSTLAKIEERAAPL 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 792 SYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADLLTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFE 871
Cdd:NF033617 792 SLNHFNQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEEGSSLLFLFLLALAAIYLVLAIQYE 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 872 SWIHPVTIFSGVVLAIAGGLMVLWstrfWFATPMtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQIE-GKDAFTAAFQS 950
Cdd:NF033617 872 SFVDPLTILSTVPLAGCGALLALA----LGGQSM--NIYAQIGLITLIGLVKKNGILMVEFANELQRHqGLSRREAIYQA 945
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387289088 951 ATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:NF033617 946 AALRLRPILMTTLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLAR 1009
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
3-1013 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 821.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 3 LSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQS 82
Cdd:pfam00873 1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 83 TSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSD--RYSRLELVELVEQL 160
Cdd:pfam00873 81 QSSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPdgSYTQTDLRDYADTN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:pfam00873 161 IKPQLSRVPGVGDVQLFGGSeYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQGQLQSAEDF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:pfam00873 241 EKIIVKNQDGSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQGVEIVVVY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVD 399
Cdd:pfam00873 321 DTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEH-GENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALT 478
Cdd:pfam00873 401 DAIVVVENIERVLEEnGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAILLSVLVALT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 479 LTPMLCSRVLHPVKvvngVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAE 558
Cdd:pfam00873 481 LTPALCATLLKPRR----EPKHGGFFRWFNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTEFLPEE 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 559 DRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGDG--------GRAWIYTTLVPWEDRKRKTQDVSAD 630
Cdd:pfam00873 557 DEGVFVTSAQLPPGVSLDQTQRVMKQVEKILKEKPEVESVFAVTGFAfsgdnngpNSGDAFISLKPWKERPGPEKSVQAL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 631 LRRQFA--REVTGGQAIVSAVRSFGGGRGAAGVTM----VLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQL 704
Cdd:pfam00873 637 IERLRKalKQIPGANVFLFQPIQLRGLGTISGFRSdlqvKIFGDDLDALDEARNQILAALAQLPGLSDVRSDGQEDQPQL 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 705 QLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSW 784
Cdd:pfam00873 717 QVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMIPLSAFAKI 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 785 TEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADL-LTPGYTIAWDGETREYIESGNDTYMLFGLALLFTF 863
Cdd:pfam00873 797 EWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQVkLPPGYGYTWTGQFEQEQLAGNSLPILIALALLVVF 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 864 LILAAQFESWIHPVTIFSGVVLAIAGGLMVLWstrfWFATPMtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQ-IEGKD 942
Cdd:pfam00873 877 LVLAALYESWSDPLSIMLTVPLALVGALLALW----LRGLPN--SVYAQVGLILLIGLAVKNAILMVEFANELReQEGKS 950
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1387289088 943 AFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLD 1013
Cdd:pfam00873 951 LEEAILEACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLFH 1021
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
8-1015 |
0e+00 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 667.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:TIGR00915 6 IDRPIFAWVIAIIIMLAGTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSSSSDSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 -SSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIIT--KADPDATPVITLSFNSDRYSRLELVELVEQLAIQR 164
Cdd:TIGR00915 86 gSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRveKASSNFLMVIGLVSDDGSMTKEDLSDYAASNMVDP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 165 IQTVPGVGSVTVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRI------ESSAREFPLRMEGRMQEVVD 238
Cdd:TIGR00915 166 LSRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQLgglpavPGQQLNATIIAQTRLQTPEQ 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 239 FENLVLVTRGD-YQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQV 317
Cdd:TIGR00915 246 FENILLKVNTDgSQVRLKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQGMKYVY 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 318 AFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLV 397
Cdd:TIGR00915 326 PYDTTPFVEASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 398 VDDAIVVLENIYRRM-EHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVA 476
Cdd:TIGR00915 406 VDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVA 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 477 LTLTPMLCSRVLHPVkvvngvkKHGWLYDKTEPFFVWFNKC-------YERLLRVATNNKALVLLAALAFSCAGFWLYTK 549
Cdd:TIGR00915 486 LILTPALCATMLKPI-------EKGEHHEKKGGFFGWFNRMfdssthgYENGVGKILRRRGRYLLVYVLLVGGMVFLFVR 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 550 LQRELTPAEDRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVP--EIDRTYHRTGDG--GR----AWIYTTLVPWEDRK 621
Cdd:TIGR00915 559 LPTSFLPDEDQGVFMTIVQLPAGATAERTQAVLAQVTKYLLAKEkaNVESVFTVNGFSfaGRgqnmGMAFIRLKDWEERT 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 622 RKTQDVSADLRRQFAREVTGGQAIV-----SAVRSFGggrGAAGVTMVL---LGSEFNELQRLGALFVKDMLESGHFVQP 693
Cdd:TIGR00915 639 GKENSVFAIAGRATGHFMQIKDAMViafvpPAILELG---NATGFDFFLqdrAGLGHEALLQARNQLLGLAAQNPALTRV 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 694 RVDPSPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEG 773
Cdd:TIGR00915 716 RPNGLEDEPQLKIDIDREKAQALGVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINKWYVRNASG 795
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 774 NLVQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLnARGADLLTPGYTIAWDGETREYIESGNDTYM 853
Cdd:TIGR00915 796 EMVPFSAFATVRWEYGSPQLERYNGLPSMEILGSAAPGVSTGQAMAAM-EAIAQKLPPGFGFSWTGMSYEERLSGSQAPA 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 854 LFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWSTRFwfatpmTDNLFSRFGLIMLIGLVAKNGILIVEFA 933
Cdd:TIGR00915 875 LYALSLLVVFLCLAALYESWSIPVSVMLVVPLGIIGALLATTLRGL------SNDVYFQVGLLTTIGLSAKNAILIVEFA 948
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 934 NQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLD 1013
Cdd:TIGR00915 949 KELMAQGKSIVEAALEAARLRLRPILMTSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVR 1028
|
..
gi 1387289088 1014 RI 1015
Cdd:TIGR00915 1029 RL 1030
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
1-1014 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 612.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 1 MILSDTSIKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNI 80
Cdd:PRK09579 1 MAFTDPFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 81 QSTSQEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSDRYSRLELVELVEQL 160
Cdd:PRK09579 81 TSVSRQNFSIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISFYSEEMSNPQITDYLSRV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGPR-FAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDF 239
Cdd:PRK09579 161 IQPKLATLPGMAEAEILGNQvFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTSINASTELKSAEAF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAF 319
Cdd:PRK09579 241 AAIPVKTSGDSRVLLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPPNLKVSIAY 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 320 DNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVD 399
Cdd:PRK09579 321 DATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 400 DAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTL 479
Cdd:PRK09579 401 DAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 480 TPMLCSRVLHPVKVVNGvkkhgwLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAED 559
Cdd:PRK09579 481 SPMMCALLLRHEENPSG------LAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEED 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 560 RGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTG-DGGRAWIYTTLV-PWEDRKRKTQDVSADLRRQFaR 637
Cdd:PRK09579 555 QGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQINGfNGVQSGIGGFLLkPWNERERTQMELLPLVQAKL-E 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 638 EVTGGQAIVSAVRSF-GGGRGAAGVTMVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKAADM 716
Cdd:PRK09579 634 EIPGLQIFGFNLPSLpGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQM 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 717 RVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESYRHF 796
Cdd:PRK09579 714 GVSMQDLGGTLATLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQF 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 797 DRMRSVVVSSqlSPGFTIGDAVDYLNARGADLLTPGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFESWIHP 876
Cdd:PRK09579 794 QQLNSAIISG--FPIVSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDP 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 877 VTIFSGVVLAIAGGLMVL---WSTRfwfatpmtdNLFSRFGLIMLIGLVAKNGILIVEFANQLQIE-GKDAFTAAFQSAT 952
Cdd:PRK09579 872 LVILVTVPLSICGALIPLflgVSSM---------NIYTQVGLVTLIGLISKHGILIVEFANQLRHEqGLSRREAIEEAAA 942
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387289088 953 IRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:PRK09579 943 IRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAK 1004
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
8-1015 |
2.11e-170 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 527.50 E-value: 2.11e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:PRK09577 6 IDRPVFAWVISLFIMLGGIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 SSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDI--DEPIITKADPDATPVITLSFNSDRYSRLELVELVEQLAIQRI 165
Cdd:PRK09577 86 QASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVrrDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 166 QTVPGVGSVTVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRI------ESSAREFPLRMEGRMQEVVDF 239
Cdd:PRK09577 166 RRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIgrsavpDSAPIAATVFADAPLKTPEDF 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 240 ENLVLVTRGD-YQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVA 318
Cdd:PRK09577 246 GAIALRARADgSALYLRDVARIEFGGNDYNYPSYVNGKTATGMGIKLAPGSNAVATEKRVRATMDELSRYFPPGVKYQIP 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 319 FDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVV 398
Cdd:PRK09577 326 YETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILV 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 399 DDAIVVLENIYRRM-EHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVAL 477
Cdd:PRK09577 406 DDAIVVVENVERLMvEEGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLAL 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 478 TLTPMLCSRVLHPVKvvngvkkhGWLYDKtEPFFVWFNKCYERLL-----RVAT--NNKALVLLAALAFSCAGFWLYTKL 550
Cdd:PRK09577 486 SLTPALCATLLKPVD--------GDHHEK-RGFFGWFNRFVARSTqryatRVGAilKRPLRWLVVYGALTAAAALLFTRL 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 551 QRELTPAEDRGVFTARLISPVGST-AEYLRLYSyDMEQMVLKVPEIDRTY-------HRTGDGGrAWIYTTLVPWEDRKR 622
Cdd:PRK09577 557 PTAFLPDEDQGNFMVMVIRPQGTPlAETMQSVR-EVESYLRRHEPVAYTFalggfnlYGEGPNG-GMIFVTLKDWKERKA 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 623 KTQDVSADLRRQFAREVTGGQAIVSAVRSfgggrgaagVTMVLLGSE--FN-ELQRLGAL----FV--KDMLESGHFVQP 693
Cdd:PRK09577 635 ARDHVQAIVARINERFAGTPNTTVFAMNS---------PALPDLGSTsgFDfRLQDRGGLgyaaFVaaREQLLAEGAKDP 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 694 RVDP-----SPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYV 768
Cdd:PRK09577 706 ALTDlmfagTQDAPQLKLDIDRAKASALGVSMDEINTTLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRLDPDDVKKLRV 785
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 769 RSTEGNLVQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNaRGADLLTPGYTIAWDGETREYIESG 848
Cdd:PRK09577 786 RNAQGEMVPLAAFATLHWTLGPPQLTRYNGYPSFTINGSAAPGHSSGEAMAAIE-RIAATLPAGIGYAWSGQSFEERLSG 864
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 849 NDTYMLFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLwSTRfwfatPMTDNLFSRFGLIMLIGLVAKNGIL 928
Cdd:PRK09577 865 AQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGV-TLR-----GMPNDIYFKVGLIATIGLSAKNAIL 938
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 929 IVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVL 1008
Cdd:PRK09577 939 IVEVAKDLVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLF 1018
|
....*..
gi 1387289088 1009 YILLDRI 1015
Cdd:PRK09577 1019 FVVVGRL 1025
|
|
| PRK10614 |
PRK10614 |
multidrug efflux system subunit MdtC; Provisional |
8-1015 |
4.98e-165 |
|
multidrug efflux system subunit MdtC; Provisional
Pssm-ID: 182589 [Multi-domain] Cd Length: 1025 Bit Score: 513.12 E-value: 4.98e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:PRK10614 8 IYRPVATILLSLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 SSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDI-DEPIITKADPDATPVITLSFNSDRYSRLELVELVE-QLAiQRI 165
Cdd:PRK10614 88 STRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMpSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFAStQLA-QTI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 166 QTVPGVGSVTVRGPRF-AMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDFENLVL 244
Cdd:PRK10614 167 SQIDGVGDVDVGGSSLpAVRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAVEDGTHRWQIQTNDELKTAAEYQPLII 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 245 VTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAFDNSTF 324
Cdd:PRK10614 247 HYNNGAAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDRIRAKLPELRETIPAAIDLQIAQDRSPT 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 325 VERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVDDAIVV 404
Cdd:PRK10614 327 IRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVV 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 405 LENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTLTPMLC 484
Cdd:PRK10614 407 LENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMC 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 485 SRVLHPVKVVNGVKKHGWlydktEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAEDRGVFT 564
Cdd:PRK10614 487 AWLLKSSKPREQKRLRGF-----GRMLVALQQGYGRSLKWVLNHTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLM 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 565 ARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTGdGGRA---WIYTTLVPWEDRKRKTQDVSADLRRQFAREvTG 641
Cdd:PRK10614 562 GFIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTG-GSRVnsgMMFITLKPLSERSETAQQVIDRLRVKLAKE-PG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 642 GQAIVSAVRSF-GGGRGA-AGVTMVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKAADMRVK 719
Cdd:PRK10614 640 ANLFLMAVQDIrVGGRQSnASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGID 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 720 VSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESYRHFDRM 799
Cdd:PRK10614 720 VQAANSLLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLS 799
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 800 RSVVVSSQLSPGFTIGDAVDYLNARGADLLTPGyTI--AWDGETREYIESGNDTYMLFGLALLFTFLILAAQFESWIHPV 877
Cdd:PRK10614 800 AASTISFNLPTGKSLSDASAAIERAMTQLGVPS-TVrgSFAGTAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPL 878
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 878 TIFSGVVLAIAGGLMVLWstrfWFATPMTdnLFSRFGLIMLIGLVAKNGILIVEFANQLQIEGK-DAFTAAFQSATIRFR 956
Cdd:PRK10614 879 TILSTLPSAGVGALLALE----LFNAPFS--LIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNlTAQEAIFQACLLRFR 952
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*....
gi 1387289088 957 PILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDRI 1015
Cdd:PRK10614 953 PIMMTTLAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRL 1011
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
7-1014 |
1.31e-163 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 509.57 E-value: 1.31e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 7 SIKRPVVSLVASIFVVLLGVLSFMSLPVREYP-MTDTAVIsVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQ 85
Cdd:COG3696 9 SLRNRLLVLLLTLLLAAAGIYSLRRLPIDAFPdITNVQVQ-VITEAPGLSPEEVEQQVTYPIETALNGLPGVKEVRSISR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 86 EESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIdEPIITkadPDATPV-----ITLSFNSDRYSRLELVELVEQL 160
Cdd:COG3696 88 FGLSVVTVIFEDGTDIYWARQLVLERLQQVREQLPAGV-TPELG---PISTGLgeiyqYTLESDPGKYSLMELRTLQDWV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 161 AIQRIQTVPGVGSVTVRGprFAMRMW---IDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVV 237
Cdd:COG3696 164 IRPQLRSVPGVAEVNSFG--GFVKQYqvlVDPAKLRAYGLTLDDVIEALERNNANVGGGYIERGGQEYLVRGIGLIRSLE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 238 DFENLVLVTRGDYQVKFSDIGRVELGPE--------DYRSETyfkghltVSVAVVRQPNANLLDVVNGVKAVIPAVRTDL 309
Cdd:COG3696 242 DIENIVVKTRNGTPVLLRDVAEVRIGPAprrgaatlNGEGEV-------VGGIVLMLKGENALEVIEAVKAKLAELKPSL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 310 PPGVNVQVAFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLA 389
Cdd:COG3696 315 PEGVKIVPFYDRSDLIDRAIHTVTKNLLEGALLVILVLFLFLGNLRAALIVALAIPLSLLFAFIVMRLFGISANLMSLGG 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 390 LVLAVGLVVDDAIVVLENIYRRMEH------GENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGI 463
Cdd:COG3696 395 LAIDFGIIVDGAVVMVENILRRLEEnraagtPRERLEVVLEAAREVRRPIFFATLIIILVFLPIFTLEGVEGKLFRPMAL 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 464 TLAVAVLVSAFVALTLTPMLCSRVLhpvkvvNGVKKHGwlydktEPFFV-WFNKCYERLLRVATNNKALVLLAALAFSCA 542
Cdd:COG3696 475 TVIFALLGALLLSLTLVPVLASLLL------RGKVPEK------ENPLVrWLKRLYRPLLRWALRHPKLVLAVALVLLVL 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 543 GFWLYTKLQRELTPAEDRGVFTARLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTG---DGGRAW------IYTT 613
Cdd:COG3696 543 ALALFPRLGSEFLPELDEGDLLVMATLPPGISLEESVELGQQVERILKSFPEVESVVSRTGraeDATDPMgvnmseTFVI 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 614 LVPWED-RKRKTQD-VSADLRRQFARevtggqaIVSAVRSFG------------GGRGAAGVTmvLLGSEFNELQRLGAL 679
Cdd:COG3696 623 LKPRSEwRSGRTKEeLIAEMREALEQ-------IPGVNFNFSqpiqmrvdellsGVRADVAVK--IFGDDLDVLRRLAEQ 693
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 680 fVKDMLESghfVQ----PRVDPSPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDA 755
Cdd:COG3696 694 -IEAVLKT---VPgaadVQVERVTGLPQLDIRIDRDAAARYGLNVADVQDVVETAIGGKAVGQVYEGERRFDIVVRLPEE 769
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 756 KRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESYRHFDRMRSVVVssqlspgftigdavdYLNARGADL------- 828
Cdd:COG3696 770 LRDDPEAIRNLPIPTPSGAQVPLSQVADIEVVEGPNQISRENGRRRIVV---------------QANVRGRDLgsfvaea 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 829 ---------LTPGYTIAWDGETrEYIESGNDTYMLFG-LALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWSTR 898
Cdd:COG3696 835 qakvaeqvkLPPGYYIEWGGQF-ENLQRATARLAIVVpLALLLIFLLLYLAFGSVRDALLILLNVPFALIGGVLALWLRG 913
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 899 FWFATPmtdnlfSRFGLIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGA 978
Cdd:COG3696 914 MPLSVS------AGVGFIALFGVAVLNGVVLVSYINQLRAEGLDLREAIIEGALERLRPVLMTALVAALGLLPMALSTGP 987
|
1050 1060 1070
....*....|....*....|....*....|....*.
gi 1387289088 979 GAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:COG3696 988 GSEVQRPLATVVIGGLITSTLLTLLVLPALYLLFGR 1023
|
|
| PRK10555 |
PRK10555 |
multidrug efflux RND transporter permease AcrD; |
8-1014 |
2.94e-152 |
|
multidrug efflux RND transporter permease AcrD;
Pssm-ID: 182544 [Multi-domain] Cd Length: 1037 Bit Score: 479.71 E-value: 2.94e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPmtDTAVISVR--TSYRGASAEVVETKITEPIEKELASIDGIRNIQS-TS 84
Cdd:PRK10555 6 IDRPIFAWVLAILLCLTGTLAIFSLPVEQYP--DLAPPNVRitANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSqSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 85 QEESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNS-----DRYSRLELVELVEQ 159
Cdd:PRK10555 84 GTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVStdgsmDKQDIADYVASNIQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 160 LAIQRIQtvpGVGSVTVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGR------IESSAREFPLRMEGRM 233
Cdd:PRK10555 164 DPLSRVN---GVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQlggtpsVDKQALNATINAQSLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 234 QEVVDFENLVL-VTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPG 312
Cdd:PRK10555 241 QTPEQFRDITLrVNQDGSEVTLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQYFPHG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 313 VNVQVAFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVL 392
Cdd:PRK10555 321 LEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 393 AVGLVVDDAIVVLENIYRRM-EHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLV 471
Cdd:PRK10555 401 AIGLLVDDAIVVVENVERIMsEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 472 SAFVALTLTPMLCSRVLHPVKVVNGVKKHGwlydktepFFVWFNKCYER-LLRVATN-----NKALVLLAALAFSCAGF- 544
Cdd:PRK10555 481 SVLVAMILTPALCATLLKPLKKGEHHGQKG--------FFGWFNRMFNRnAERYEKGvakilHRSLRWILIYVLLLGGMv 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 545 WLYTKLQRELTPAEDRGVFTARLISPVGSTaeylrlysydmEQMVLKVPEIDRTYHRT---------------GDGGR-- 607
Cdd:PRK10555 553 FLFLRLPTSFLPLEDRGMFTTSVQLPSGST-----------QQQTLKVVEKVEKYYFThekdnvmsvfatvgsGPGGNgq 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 608 --AWIYTTLVPWEDRKRKTQDVSADLRR--QFAREVTGGQAIVSAVRSFGGGRGAAGVTMvllgsefnELQRLGALfvkd 683
Cdd:PRK10555 622 nvARMFIRLKDWDERDSKTGTSFAIIERatKAFNKIKEARVIASSPPAISGLGSSAGFDM--------ELQDHAGA---- 689
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 684 mlesGH--FVQPR--------VDPSPTK---------PQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQ 744
Cdd:PRK10555 690 ----GHdaLMAARnqllalaaKNPELTRvrhnglddsPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGR 765
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 745 QYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNAR 824
Cdd:PRK10555 766 VKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESL 845
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 825 GADLLTpGYTIAWDGETREYIESGNDTYMLFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWstrfwfATP 904
Cdd:PRK10555 846 VKQLPN-GFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATW------MRG 918
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 905 MTDNLFSRFGLIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRN 984
Cdd:PRK10555 919 LENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQH 998
|
1050 1060 1070
....*....|....*....|....*....|
gi 1387289088 985 PMGIVVVGGLTLSTVITLFVIPVLYILLDR 1014
Cdd:PRK10555 999 AVGTGVMGGMISATILAIFFVPLFFVLVRR 1028
|
|
| PRK10503 |
PRK10503 |
MdtB/MuxB family multidrug efflux RND transporter permease subunit; |
8-1015 |
1.49e-151 |
|
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
Pssm-ID: 182501 [Multi-domain] Cd Length: 1040 Bit Score: 478.07 E-value: 1.49e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:PRK10503 17 ILRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 SSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDI-DEPIITKADPDATPVITLSFNSDRYSRLELVELVEQLAIQRIQ 166
Cdd:PRK10503 97 ASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLpNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKIS 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 167 TVPGVGSVTVRG-PRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGRMQEVVDFENLVLV 245
Cdd:PRK10503 177 QVSGVGLVTLSGgQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRAVTLSANDQMQSAEEYRQLIIA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 246 TRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVNVQVAFDNSTFV 325
Cdd:PRK10503 257 YQNGAPIRLGDVATVEQGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 326 ERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVDDAIVVL 405
Cdd:PRK10503 337 RASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVI 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 406 ENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSAFVALTLTPMLCS 485
Cdd:PRK10503 417 ENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCA 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 486 RVLHPvkvvNGVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCAGFWLYTKLQRELTPAEDRGVFTA 565
Cdd:PRK10503 497 RMLSQ----ESLRKQNRFSRASERMFDRVIAAYGRGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQG 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 566 RLISPVGSTAEYLRLYSYDMEQMVLKVPEIDRTYHRTG-DG-------GRAWIytTLVPWEDRKRKTQDVSADLRRQFAR 637
Cdd:PRK10503 573 TLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGvDGtnpslnsARLQI--NLKPLDERDDRVQKVIARLQTAVAK 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 638 eVTGGQAIVSAVRSfgggrgaagvtmVLLGSEFNELQRLGALFVKDMLESGHFVQPRVDPSPTKPQLQ------------ 705
Cdd:PRK10503 651 -VPGVDLYLQPTQD------------LTIDTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSdvssdwqdkglv 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 706 --LRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARLYVRSTEGNLVQLSNLVS 783
Cdd:PRK10503 718 ayVNVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIAT 797
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 784 WTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADLLTPG-YTIAWDGETREYIESGNDTYMLFGLALLFT 862
Cdd:PRK10503 798 IEQRFGPLSINHLDQFPSTTISFNVPDGYSLGDAVQAIMDTEKTLNLPAdITTQFQGSTLAFQSALGSTVWLIVAAVVAM 877
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 863 FLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWstrfwfATPMTDNLFSRFGLIMLIGLVAKNGILIVEFANQLQIE-GK 941
Cdd:PRK10503 878 YIVLGVLYESFIHPITILSTLPTAGVGALLALM------IAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREqGM 951
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1387289088 942 DAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLFVIPVLYILLDRI 1015
Cdd:PRK10503 952 SPRDAIYQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLLFDRL 1025
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
8-1014 |
3.50e-148 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 469.38 E-value: 3.50e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 8 IKRPVVSLVASIFVVLLGVLSFMSLPVREYPMTDTAVISVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQEE 87
Cdd:PRK15127 6 IDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDST 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 88 SS-RITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDEPIITKADPDATPVITLSFNSDRYS--RLELVELVEQLAIQR 164
Cdd:PRK15127 86 GTvQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTmtQEDISDYVAANMKDP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 165 IQTVPGVGSVTVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSArefPLR---------MEGRMQE 235
Cdd:PRK15127 166 ISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQLGGTP---PVKgqqlnasiiAQTRLTS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 236 VVDFENLVLVTRGD-YQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPGVN 314
Cdd:PRK15127 243 TEEFGKILLKVNQDgSRVRLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLK 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 315 VQVAFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAV 394
Cdd:PRK15127 323 IVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 395 GLVVDDAIVVLENIYRRM-EHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFGITLAVAVLVSA 473
Cdd:PRK15127 403 GLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSV 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 474 FVALTLTPMLCSRVLHPVKvvngVKKHGwlyDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAF-------SCAGFWL 546
Cdd:PRK15127 483 LVALILTPALCATMLKPIA----KGDHG---EGKKGFFGWFNRMFEKSTHHYTDSVGNILRSTGRYlvlyliiVVGMAYL 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 547 YTKLQRELTPAEDRGVFTARLISPVGSTAE-------YLRLYSYDMEQMVLKVPEIDRTYHRTGDGGRAWI-YTTLVPWE 618
Cdd:PRK15127 556 FVRLPSSFLPDEDQGVFLTMVQLPAGATQErtqkvlnEVTDYYLTKEKNNVESVFAVNGFGFAGRGQNTGIaFVSLKDWA 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 619 DRKRKTQDVSADLRRQFAREVTGGQAIV-----SAVRSFGGGRG-------AAGVTMVLLGSEFNELQRLGALFvKDMLe 686
Cdd:PRK15127 636 DRPGEENKVEAITMRATRAFSQIKDAMVfafnlPAIVELGTATGfdfelidQAGLGHEKLTQARNQLLGEAAKH-PDML- 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 687 sghfVQPRVDPSPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKRATPSDLARL 766
Cdd:PRK15127 714 ----VGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDW 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 767 YVRSTEGNLVQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSPGFTIGDAVDYLNARGADLLTpGYTIAWDGETREYIE 846
Cdd:PRK15127 790 YVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEELASKLPT-GVGYDWTGMSYQERL 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 847 SGNDTYMLFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMvlwstrfwFAT--PMTDNLFSRFGLIMLIGLVAK 924
Cdd:PRK15127 869 SGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL--------AATfrGLTNDVYFQVGLLTTIGLSAK 940
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 925 NGILIVEFANQL-QIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIVVVGGLTLSTVITLF 1003
Cdd:PRK15127 941 NAILIVEFAKDLmDKEGKGLIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
|
1050
....*....|.
gi 1387289088 1004 VIPVLYILLDR 1014
Cdd:PRK15127 1021 FVPVFFVVVRR 1031
|
|
| 2A0601 |
TIGR00914 |
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ... |
7-1009 |
4.25e-102 |
|
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 129992 [Multi-domain] Cd Length: 1051 Bit Score: 345.21 E-value: 4.25e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 7 SIKRPVVSLVASIFVVLLGVLSFMSLPVREYP-MTDTAVIsVRTSYRGASAEVVETKITEPIEKELASIDGIRNIQSTSQ 85
Cdd:TIGR00914 9 SVAQRWLVLLATLVMAILGIWSYNRLPIDAVPdITNVQVQ-INTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLSR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 86 EESSRITIEFNLDRNIDEAANDVRDRMSRARRRLPDDIDepiiTKADPDATPV-----ITLSFNSD-------RYSRLEL 153
Cdd:TIGR00914 88 YGLSQVTVIFKDGTDLYFARQLVNERLQQARDNLPEGVS----PEMGPISTGLgeiflYTVEAEEGarkkdggAYTLTDL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 154 VELVEQLAIQRIQTVPGVGSV-TVRGPRFAMRMWIDSDRLAAYELTVADVEAALRAQNVEVPSGRIESSAREFPLRMEGR 232
Cdd:TIGR00914 164 RTIQDWIIRPQLRTVPGVAEVnSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYIERRGEQYLVRAPGQ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 233 MQEVVDFENLVLVTRGDYQVKFSDIGRVELGPEDYRSETYFKGHLTVSVAVVRQPNANLLDVVNGVKAVIPAVRTDLPPG 312
Cdd:TIGR00914 244 VQSMDDIRNIVIATGEGVPIRIRDVARVQIGKELRTGAATENGKEVVLGTVFMLIGENSRTVAQAVGDKLETINKTLPEG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 313 VNVQVAFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINIltLLALVL 392
Cdd:TIGR00914 324 VEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANL--MSLGAL 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 393 AVGLVVDDAIVVLENIYRRMEHGENA----------IHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQSGQTGRLFYEFG 462
Cdd:TIGR00914 402 DFGLIVDGAVVIVENAHRRLAEAQHHhgrqltlkerLHEVFAASREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMA 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 463 ITLAVAVLVSAFVALTLTPMLCsrvlhpvkvvnGVKKHGWLYDKTEPFFVWFNKCYERLLRVATNNKALVLLAALAFSCA 542
Cdd:TIGR00914 482 FTVVLALAGAMILSLTFVPAAV-----------ALFIRGKVAEKENRLMRVLKRRYEPLLERVLAWPAVVLGAAAVSIVL 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 543 GFWLYTKLQRELTPAEDRGVF---TARL--ISPVGSTAEYLRLysydmEQMVLKVPEIDRTYHRTgdgGRAWIYTTLVP- 616
Cdd:TIGR00914 551 VVWIASRVGGEFIPSLNEGDLayqALRIpgTSLAQSVAMQQTL-----EKLIKSFPEVARVFAKT---GTAEIATDPMPp 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 617 --------------WEDRKRKTQDVSADLRRQFAREVTGGQAIVSAVRS-----FGGGRGAAGVTmvLLGSEFNELQRLG 677
Cdd:TIGR00914 623 nasdtyiilkpesqWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMrfnelISGVRSDVAVK--VFGDDLDDLDATA 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 678 ALFVKDMLESGHFVQPRVDPSPTKPQLQLRIDRAKAADMRVKVSDIATTLESLLGSRRVTEFQRGNQQYYVVVQIEDAKR 757
Cdd:TIGR00914 701 EKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGETFEGDRRFDIVIRLPESLR 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 758 ATPSDLARLYVRSTEGNL-----VQLSNLVSWTEDTVAESYRHFDRMRSVVVSSQLSpGFTIGDAVDYLNARGAD--LLT 830
Cdd:TIGR00914 781 ESPQALRQLPIPLPLSEDarkqfIPLSDVADLRVSPGPNQISRENGKRRVVVSANVR-GRDLGSFVDDAKKAIAEqvKLP 859
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 831 PGYTIAWDGETrEYIESGNDTYMLF-GLALLFTFLILAAQFESWIHPVTIFSGVVLAIAGGLMVLWstrfWFATPMTdnL 909
Cdd:TIGR00914 860 PGYWITWGGQF-EQLQSATKRLQIVvPVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALW----LRGIPLS--I 932
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 910 FSRFGLIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGAETRNPMGIV 989
Cdd:TIGR00914 933 SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTGAEVQRPLATV 1012
|
1050 1060
....*....|....*....|
gi 1387289088 990 VVGGLTLSTVITLFVIPVLY 1009
Cdd:TIGR00914 1013 VIGGIITATLLTLFVLPALY 1032
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
298-1015 |
1.32e-20 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 98.01 E-value: 1.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 298 VKAVIPAVRTDL----PPGVNVQV---AFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIG 370
Cdd:COG1033 179 RKEVVAEIRAIIakyeDPGVEVYLtgfPVLRGDIAEAIQSDLAIFFPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIW 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 371 TFTVMSILGFSINILTLLALVLAVGLVVDDAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFQ 450
Cdd:COG1033 259 TLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 451 SGQTGRlfyEFGITLAVAVLVSAFVALTLTPMLCSRVLHPVKVVNGVKKHGWLydktepffvwfNKCYERLLRVATNNKA 530
Cdd:COG1033 339 DIPPIR---DFGIVAAIGVLLAFLTSLTLLPALLSLLPRPKPKTRRLKKPPEL-----------GRLLAKLARFVLRRPK 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 531 LVLLAALAFSCAGFWLYTKLQreltpaedrgvftarlispvgstaeylrlYSYDMEQMVlkvpeidrtyhrtgdggrawi 610
Cdd:COG1033 405 VILVVALVLAVVSLYGISRLK-----------------------------VEYDFEDYL--------------------- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 611 yttlvpwedrkRKTQDVSADLRrqFAREVTGGQAIVSAVRSFGGGRGAagvtmvllgSEFNELQRLGALfvKDMLESghf 690
Cdd:COG1033 435 -----------PEDSPIRQDLD--FIEENFGGSDPLEVVVDTGEPDGL---------KDPEVLKEIDRL--QDYLES--- 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 691 vQPRVDpsptkpqlqlridrakaadmrvKVSDIATTLESLLGSrrvteFQRGNQQYYVVVQIEDakratpsdlarlyvrs 770
Cdd:COG1033 488 -LPEVG----------------------KVLSLADLVKELNQA-----LNEGDPKYYALPESRE---------------- 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 771 tegNLVQLSNLVSWTEDTVAESYRHFDRMRS-VVVSSQLSPGFTIGDAVDYLNARGADLL-TPGYTIAWDGETR------ 842
Cdd:COG1033 524 ---LLAQLLLLLSSPPGDDLSRFVDEDYSAArVTVRLKDLDSEEIKALVEEVRAFLAENFpPDGVEVTLTGSAVlfaain 600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 843 EYIESGNdtYMLFGLALLFTFLILAAQFESWIHPV--TIFSGVVLAIAGGLMVLWSTRFWFATPMtdnLFSrfgliMLIG 920
Cdd:COG1033 601 ESVIESQ--IRSLLLALLLIFLLLLLAFRSLRLGLisLIPNLLPILLTFGLMGLLGIPLNIATAV---VAS-----IALG 670
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 921 LVAKNGILIVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATILGAVPIAFATGAGaeTRNpMGIVVVGGLTLSTVI 1000
Cdd:COG1033 671 IGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPP--LAD-FGLLLALGLLVALLA 747
|
730
....*....|....*
gi 1387289088 1001 TLFVIPVLYILLDRI 1015
Cdd:COG1033 748 ALLLLPALLLLLDPR 762
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
265-483 |
2.08e-13 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 74.51 E-value: 2.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 265 EDYRSETYFKGHLTVSVAVVRQpnANLLDVVNGVKAVIpaVRTDLPPGVNVQVAFDNSTF---VERSVKEVYKTILEASA 341
Cdd:COG1033 541 SRFVDEDYSAARVTVRLKDLDS--EEIKALVEEVRAFL--AENFPPDGVEVTLTGSAVLFaaiNESVIESQIRSLLLALL 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 342 LVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVVDDAIVVLENIYRRMEHGENAIHA 421
Cdd:COG1033 617 LIFLLLLLAFRSLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGDLEEA 696
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1387289088 422 AIFGTRQVAFAVIATTLTLAAVFLPVAFQSgqtGRLFYEFGITLAVAVLVSAFVALTLTPML 483
Cdd:COG1033 697 IRRALRTTGKAILFTSLTLAAGFGVLLFSS---FPPLADFGLLLALGLLVALLAALLLLPAL 755
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
816-1046 |
2.77e-12 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 71.04 E-value: 2.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 816 DAVDYLNARGADLLTPGYTI------AWDGETREYIESgnDTYMLFGLALLFTFLILAAQFESWIHPVTIFSGVVLAIAG 889
Cdd:COG1033 181 EVVAEIRAIIAKYEDPGVEVyltgfpVLRGDIAEAIQS--DLAIFFPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIW 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 890 --GLMVLWSTRFwfaTPMTDNLFsrfglIMLIGLVAKNGILIVEFANQLQIEGKDAFTAAFQSATIRFRPILMTSIATIL 967
Cdd:COG1033 259 tlGLMGLLGIPL---SPLTILVP-----PLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVLLTSLTTAI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 968 GavpiaFAT------GAGAEtrnpMGIVVVGGLTLSTVITLFVIPVLYILLDRicvkvtGKSSAYGLKRAEEIDRETRTI 1041
Cdd:COG1033 331 G-----FLSllfsdiPPIRD----FGIVAAIGVLLAFLTSLTLLPALLSLLPR------PKPKTRRLKKPPELGRLLAKL 395
|
....*
gi 1387289088 1042 GSGVH 1046
Cdd:COG1033 396 ARFVL 400
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
291-483 |
9.05e-11 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 66.01 E-value: 9.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 291 LLDVVNGVKAVIPavRTDLPPGVNVQVAFD---NSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVS 367
Cdd:TIGR00921 153 VVPIYNDVERSLE--RTNPPSGKFLDVTGSpaiNYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFG 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 368 IIGTFTVMSILGFSINILTLLALVLAVGLVVDDAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPV 447
Cdd:TIGR00921 231 VAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAAL 310
|
170 180 190
....*....|....*....|....*....|....*.
gi 1387289088 448 aFQSGQtgRLFYEFGITLAVAVLVSAFVALTLTPML 483
Cdd:TIGR00921 311 -ALSEF--PMVSEFGLGLVAGLITAYLLTLLVLPAL 343
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
252-483 |
2.37e-10 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 64.99 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 252 VKFSDIGRVELGPEDYRSETYFKGHLTVSVAVvrqpNANLLDVVNGVKAVIPAV-RTDLPPGVNVQVAFDNSTFV---ER 327
Cdd:TIGR00833 95 ISVVDFWGPPEAAEGLRSDDGKATIIIVNLAG----EKGQKEAQEAINAVRRIVeQTNAPDGLTVHVTGPLATIAdilES 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 328 SVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVV-----DDAI 402
Cdd:TIGR00833 171 GDKDMNRITATTGIIVLIILLLVYRSPITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVigagtDYAV 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 403 VVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAAVFLPVAFqsgqtGRL--FYEFGITLAVAVLVSAFVALTLT 480
Cdd:TIGR00833 251 FLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSL-----ARLpsFKTLGVSCAVGVLVALLNAVTLT 325
|
...
gi 1387289088 481 PML 483
Cdd:TIGR00833 326 PAL 328
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
306-483 |
7.51e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 56.38 E-value: 7.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 306 RTDLPPGVNVQVAFDNSTFVE--RSVKEVYKTI-LEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTVMSILGFSI 382
Cdd:TIGR00921 540 HEHPPPGVKVGVTGLPVAFAEmhELVNEGMRRMtIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPS 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 383 NILTLLALVLAVGLVVDDAIVVLENIY-RRMEHG-ENAIHAAIfgtRQVAFAVIATTLTLAAVFLpvAFQSGQTGrLFYE 460
Cdd:TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFeERKEHGpKEAITHTM---ERTGPGILFSGLTTAGGFL--SLLLSHFP-IMRN 693
|
170 180
....*....|....*....|...
gi 1387289088 461 FGITLAVAVLVSAFVALTLTPML 483
Cdd:TIGR00921 694 FGLVQGIGVLSSLTAALVVFPAL 716
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
296-485 |
8.87e-07 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 52.29 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 296 NGVKAVIPAV-RTDLPPGVNVQVAFDNSTFV---ERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGT 371
Cdd:pfam03176 104 ESVAAVRDAVeQAPPPEGLKAYLTGPAATVAdlrDAGDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAA 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 372 FTVMSILG---------FSINILTLLALVLAVglvvDDAIVVLENIYRRMEHGENAIHAAIFGTRQVAFAVIATTLTLAA 442
Cdd:pfam03176 184 QGLVAILAhilgiglstFALNLLVVLLIAVGT----DYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAI 259
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387289088 443 VFLPVAFQSGqtgRLFYEFGITLAVAVLVSAFVALTLTPMLCS 485
Cdd:pfam03176 260 AMLALSFARL---PVFAQVGPTIAIGVLVDVLAALTLLPALLA 299
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
844-1043 |
1.49e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 52.53 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 844 YIESGNDTYMLFGLALLFTFLILAAQFESWIHPVTifsGVVLAIAGGLMVLwSTRFWFATPMTdnLFSRFGLIMLIGLVA 923
Cdd:TIGR00921 188 EREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLL---PLVIILFGVAWVL-GIMGWLGIPLY--ATTLLAVPMLIGVGI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 924 KNGIlivEFANQLQIE---GKDAFTAAFQSATIRFRPILMTSIATILGAVPIaFATGAGAETRnpMGIVVVGGLTLSTVI 1000
Cdd:TIGR00921 262 DYGI---QTLNRYEEErdiGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAAL-ALSEFPMVSE--FGLGLVAGLITAYLL 335
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1387289088 1001 TLFVIPVLYILLDRICVKVTGKSSAYGLKRAeEIDRETRTIGS 1043
Cdd:TIGR00921 336 TLLVLPALLQSIDIGREKVKKEIIAIGGKSS-EIEEELSKVLS 377
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
298-481 |
1.11e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 49.38 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 298 VKAVIPAVRTDLPPGVNVQV---AFDNSTFVERSVKEVYKTILEASALVILIIFLFLRNWRATLVPLVAIPVSIIGTFTV 374
Cdd:COG2409 134 VDALRDAVAAAPAPGLTVYVtgpAALAADLNEAFEEDLGRAELITLPVALVVLLLVFRSLVAALLPLLTAGLAVGVALGL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 375 MSILG-------FSINILtllalvlavglvvddAIVVL---------------ENIYRRMEHGEnAIHAAIFGT-RQVAF 431
Cdd:COG2409 214 LALLAaftdvssFAPNLL---------------TMLGLgvgidyalflvsryrEELRAGEDREE-AVARAVATAgRAVLF 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1387289088 432 A---VIATTLTLAAVFLPVaFQSgqtgrlfyeFGITLAVAVLVSAFVALTLTP 481
Cdd:COG2409 278 SgltVAIALLGLLLAGLPF-LRS---------MGPAAAIGVAVAVLAALTLLP 320
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
326-480 |
9.48e-04 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 42.66 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 326 ERSV-----KEVYKTILEASALVILIIFLFLRNWRAT--LVPLVAIPVSIIGTFTVMSILGFSINILTLLALVLAVGLVV 398
Cdd:TIGR01129 235 ERTIgpslgADSIEAGIKAGLIGLVLVLVFMILYYRLfgLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387289088 399 DDAIVVLENIYRRMEHG---ENAIHAAIFGTRQVAFAVIATTLtLAAVFLpVAFQSGQT-GrlfyeFGITLAVAVLVSAF 474
Cdd:TIGR01129 315 DANVLIYERIKEELRLGksvRQAIEAGFERAFSTIFDANITTL-IAALIL-YVFGTGPVkG-----FAVTLAIGIIASLF 387
|
....*.
gi 1387289088 475 VALTLT 480
Cdd:TIGR01129 388 TALVFT 393
|
|
| |
