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Conserved domains on  [gi|1380482450|gb|AWB91440|]
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hypothetical protein C3E78_03950 [Aeromicrobium chenweiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 101-502 1.20e-103

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


:

Pssm-ID: 466405  Cd Length: 370  Bit Score: 336.21  E-value: 1.20e-103
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  101 SITIYRTGYYGGDGARKITTVTPsatlpqhQPSCITDVSTQLYDCGtWGVSASWDVPSTAVSGVYIARLRRSDtGGESHI 180
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSAP-------LTYGAIHFHTDLVDCN-WTTSFTFTVPADWRSGVYAAKLTTAD-GKQSYI 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  181 TFVVRNDASTSAVVAQTSDPTWHAYNMYGGSNFYRGGNN------GRAYQLSYNRPFATRDGTEARdFYFASEYPLVRFM 254
Cdd:pfam20254   72 PFVVRPPARRADLLVVLPTTTYQAYNNWGGYSLYDHSDGsgvaysSRARPVSFDRPYYRHWAFGAP-GYFFADLPFIRWL 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  255 EKNGYDVSYIAGVDSDRNGELLTNHRTFVSMGHDEYWSGAQRANVEAARDAGVNLMFLSGNEAYWRTRYEPSADPehtPG 334
Cdd:pfam20254  151 EREGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPH---VR 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  335 RILTSYKeTWSNDKIDPSPEWTGT--WRDPrfasklsGAGRPENGLTGTLYMSNDTDlPVTVSADEAklRLWRGTSLRsl 412
Cdd:pfam20254  228 RTMVCYK-TWSPDPGEYPHALTGEllWRDR-------GNPRPENSLLGVGYAAQGFG-PYVVTDPDH--WLFAGTGLK-- 294

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  413 aagaSAQLAPHTVGYESNEDLDNGArPPGLIRLSTTTgpapqyLQDFGNDvaEGTTTHHLTMYRAASGAlVFSAGSIQWT 492
Cdd:pfam20254  295 ----NGDFGGGLLGYEADRVDVLGS-PPGIVVLASSP------HVDYGNP--GGRVRADMTYYETGGGA-VFSAGSIQWA 360

                          410
                   ....*....|
gi 1380482450  493 WGLDATHDGN 502
Cdd:pfam20254  361 GGLAWNGYDN 370
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1433-1573 3.63e-61

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 205.58  E-value: 3.63e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1433 TPSVASLNDSSPVELGTAFSSSVDGTVTAIRFYKGPGNGGTHVGSLWSASGERLAMVTFTGEGASGWQTATLSTPVPITG 1512
Cdd:pfam13313    3 VPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSVTA 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1380482450 1513 GTTYVVSYYAPEGHYSVTPGFFAVPWTVGPLSARTSNNGVFAYGEGGGFPTGSYNATNYFV 1573
Cdd:pfam13313   83 GTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1171-1313 3.07e-55

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 188.63  E-value: 3.07e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1171 DQVPQVPSVNDGSAVEVGTAFRPAKDGTITSIRFYKGPGNAGTHVGRLWSETGQQLASVTFTNETPTGWQTARLPQPVSV 1250
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450 1251 TAGTSYVVSYLAPQGHYASTGGFFANALTNGDLTAPAGKNGRYLYGSSGGLPIYDFNATSYFV 1313
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 913-1051 2.10e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.81  E-value: 2.10e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  913 STTPTILQAADPSAVSLGVRFSADVPGTITGVKFYKGPNNTGSHTGALWTASGTQLAEGTFTDESTSGWQTLTFDEPVEI 992
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450  993 AKNTEYVASYRAPAGMYSATPGDLAAERITAPLRT-SANGGSYTYG--SGFPA-TRTSTSYLV 1051
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTApSGGNGVYAYGagGGFPTqSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 642-787 4.25e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


:

Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.04  E-value: 4.25e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  642 DEVPNVPAADDATNLELGLRFSPTTDGYVSGVRFYKGAGNTGTHVGSLWSSAGQKLAAVTFSGESSTGWQEATFASAVPV 721
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  722 TKDETYTVSYTAPNGHYAVKPHAFSAmGVKAHPLSVDGGYGAVRAgvHGAPGRMPDSAFRNSNYYV 787
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTS-GVTNGPLTAPSGGNGVYA--YGAGGGFPTQSYNGSNYWV 143
Big_5 pfam13205
Bacterial Ig-like domain;
795-895 1.12e-13

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 68.56  E-value: 1.12e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  795 DSSPLTVTSHWPLSGSTSVPLGSTVSATFSKPLAPGS--ATMTLTDANGSLVDGSTAYDAGSRTVTFTPSSELSGFVKYT 872
Cdd:pfam13205    1 DTTPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATvnAAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYT 80

                           90       100
                   ....*....|....*....|....*
gi 1380482450  873 A--RAGGVDTQGNAVSSGARSSFTT 895
Cdd:pfam13205   81 VtiTAGIKDLAGNALAGPYTWSFTT 105
Big_5 pfam13205
Bacterial Ig-like domain;
1325-1418 1.65e-04

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 42.36  E-value: 1.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1325 TVRDVSPDSGDTDVQLASTVSATLSAPVAPG----YSLTVTNGTSEVAGTTSLSSDKETITFTPSARLPADTELTARL-R 1399
Cdd:pfam13205    6 TVVSTTPADGATNVAVNSSITVTFSEAIDPAtvnaAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYTVTItA 85

                           90       100
                   ....*....|....*....|
gi 1380482450 1400 DVVSTEG-ASVADRTWTFRT 1418
Cdd:pfam13205   86 GIKDLAGnALAGPYTWSFTT 105
SO_family_Moco super family cl00199
Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) ...
 576-622 6.64e-04

Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.


The actual alignment was detected with superfamily member cd02110:

Pssm-ID: 469652 [Multi-domain]  Cd Length: 317  Bit Score: 43.83  E-value: 6.64e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  576 VAGVEVSTDGGTTWHPAT------GTTS---WSYrYVQSGTGATPVMARAVDDSAN 622
Cdd:cd02110    238 IRRVEVSLDGGRTWQEARlegplaGPRAwrqWEL-DWDLPPGEYELVARATDSTGN 292
Big_5 pfam13205
Bacterial Ig-like domain;
1064-1126 1.40e-03

Bacterial Ig-like domain;


:

Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 39.67  E-value: 1.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1380482450 1064 ITAQDPPAGAVDVPRDTDIGVWFDDAIKPGATLDVT------SGGSPVTGTsrLSADATRLTFDPAGLL 1126
Cdd:pfam13205    7 VVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVvivlsdGAGVPVTGT--VSVDGKTVTITPSAAL 73
 
Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 101-502 1.20e-103

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


Pssm-ID: 466405  Cd Length: 370  Bit Score: 336.21  E-value: 1.20e-103
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  101 SITIYRTGYYGGDGARKITTVTPsatlpqhQPSCITDVSTQLYDCGtWGVSASWDVPSTAVSGVYIARLRRSDtGGESHI 180
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSAP-------LTYGAIHFHTDLVDCN-WTTSFTFTVPADWRSGVYAAKLTTAD-GKQSYI 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  181 TFVVRNDASTSAVVAQTSDPTWHAYNMYGGSNFYRGGNN------GRAYQLSYNRPFATRDGTEARdFYFASEYPLVRFM 254
Cdd:pfam20254   72 PFVVRPPARRADLLVVLPTTTYQAYNNWGGYSLYDHSDGsgvaysSRARPVSFDRPYYRHWAFGAP-GYFFADLPFIRWL 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  255 EKNGYDVSYIAGVDSDRNGELLTNHRTFVSMGHDEYWSGAQRANVEAARDAGVNLMFLSGNEAYWRTRYEPSADPehtPG 334
Cdd:pfam20254  151 EREGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPH---VR 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  335 RILTSYKeTWSNDKIDPSPEWTGT--WRDPrfasklsGAGRPENGLTGTLYMSNDTDlPVTVSADEAklRLWRGTSLRsl 412
Cdd:pfam20254  228 RTMVCYK-TWSPDPGEYPHALTGEllWRDR-------GNPRPENSLLGVGYAAQGFG-PYVVTDPDH--WLFAGTGLK-- 294

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  413 aagaSAQLAPHTVGYESNEDLDNGArPPGLIRLSTTTgpapqyLQDFGNDvaEGTTTHHLTMYRAASGAlVFSAGSIQWT 492
Cdd:pfam20254  295 ----NGDFGGGLLGYEADRVDVLGS-PPGIVVLASSP------HVDYGNP--GGRVRADMTYYETGGGA-VFSAGSIQWA 360

                          410
                   ....*....|
gi 1380482450  493 WGLDATHDGN 502
Cdd:pfam20254  361 GGLAWNGYDN 370
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1433-1573 3.63e-61

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 205.58  E-value: 3.63e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1433 TPSVASLNDSSPVELGTAFSSSVDGTVTAIRFYKGPGNGGTHVGSLWSASGERLAMVTFTGEGASGWQTATLSTPVPITG 1512
Cdd:pfam13313    3 VPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSVTA 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1380482450 1513 GTTYVVSYYAPEGHYSVTPGFFAVPWTVGPLSARTSNNGVFAYGEGGGFPTGSYNATNYFV 1573
Cdd:pfam13313   83 GTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1171-1313 3.07e-55

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 188.63  E-value: 3.07e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1171 DQVPQVPSVNDGSAVEVGTAFRPAKDGTITSIRFYKGPGNAGTHVGRLWSETGQQLASVTFTNETPTGWQTARLPQPVSV 1250
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450 1251 TAGTSYVVSYLAPQGHYASTGGFFANALTNGDLTAPAGKNGRYLYGSSGGLPIYDFNATSYFV 1313
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 913-1051 2.10e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.81  E-value: 2.10e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  913 STTPTILQAADPSAVSLGVRFSADVPGTITGVKFYKGPNNTGSHTGALWTASGTQLAEGTFTDESTSGWQTLTFDEPVEI 992
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450  993 AKNTEYVASYRAPAGMYSATPGDLAAERITAPLRT-SANGGSYTYG--SGFPA-TRTSTSYLV 1051
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTApSGGNGVYAYGagGGFPTqSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 642-787 4.25e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.04  E-value: 4.25e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  642 DEVPNVPAADDATNLELGLRFSPTTDGYVSGVRFYKGAGNTGTHVGSLWSSAGQKLAAVTFSGESSTGWQEATFASAVPV 721
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  722 TKDETYTVSYTAPNGHYAVKPHAFSAmGVKAHPLSVDGGYGAVRAgvHGAPGRMPDSAFRNSNYYV 787
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTS-GVTNGPLTAPSGGNGVYA--YGAGGGFPTQSYNGSNYWV 143
Big_5 pfam13205
Bacterial Ig-like domain;
795-895 1.12e-13

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 68.56  E-value: 1.12e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  795 DSSPLTVTSHWPLSGSTSVPLGSTVSATFSKPLAPGS--ATMTLTDANGSLVDGSTAYDAGSRTVTFTPSSELSGFVKYT 872
Cdd:pfam13205    1 DTTPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATvnAAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYT 80

                           90       100
                   ....*....|....*....|....*
gi 1380482450  873 A--RAGGVDTQGNAVSSGARSSFTT 895
Cdd:pfam13205   81 VtiTAGIKDLAGNALAGPYTWSFTT 105
Big_5 pfam13205
Bacterial Ig-like domain;
1325-1418 1.65e-04

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 42.36  E-value: 1.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1325 TVRDVSPDSGDTDVQLASTVSATLSAPVAPG----YSLTVTNGTSEVAGTTSLSSDKETITFTPSARLPADTELTARL-R 1399
Cdd:pfam13205    6 TVVSTTPADGATNVAVNSSITVTFSEAIDPAtvnaAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYTVTItA 85

                           90       100
                   ....*....|....*....|
gi 1380482450 1400 DVVSTEG-ASVADRTWTFRT 1418
Cdd:pfam13205   86 GIKDLAGnALAGPYTWSFTT 105
SO_family_Moco_dimer cd02110
Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved ...
 576-622 6.64e-04

Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).


Pssm-ID: 239028 [Multi-domain]  Cd Length: 317  Bit Score: 43.83  E-value: 6.64e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  576 VAGVEVSTDGGTTWHPAT------GTTS---WSYrYVQSGTGATPVMARAVDDSAN 622
Cdd:cd02110    238 IRRVEVSLDGGRTWQEARlegplaGPRAwrqWEL-DWDLPPGEYELVARATDSTGN 292
Big_5 pfam13205
Bacterial Ig-like domain;
1064-1126 1.40e-03

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 39.67  E-value: 1.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1380482450 1064 ITAQDPPAGAVDVPRDTDIGVWFDDAIKPGATLDVT------SGGSPVTGTsrLSADATRLTFDPAGLL 1126
Cdd:pfam13205    7 VVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVvivlsdGAGVPVTGT--VSVDGKTVTITPSAAL 73
PRK15310 PRK15310
fimbrial outer membrane usher protein TcfC; Provisional
 1331-1438 2.62e-03

fimbrial outer membrane usher protein TcfC; Provisional


Pssm-ID: 185210 [Multi-domain]  Cd Length: 895  Bit Score: 42.68  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1331 PDSGDTDVQLASTVSATLSAPVAP-----GYSLTVTNGTSEVAGTTSlSSDKETItFTPSARLPADTELTARLRDVVSTE 1405
Cdd:PRK15310   466 PQSVHASMTCQTSMNASLSVPVGNwyallGYSTSRTEGRPVYRGYDD-NSDKENV-FWRQAYIPASHRESAQASATYSLN 543

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1380482450 1406 --GASVADRTWTFRTEASGTTAHSLFAGSTPSVAS 1438
Cdd:PRK15310   544 maGMNINTHGGVWRTRNDGVNDDGLFMSVSVSYAS 578
 
Name Accession Description Interval E-value
DUF6605 pfam20254
Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown ...
 101-502 1.20e-103

Domain of unknown function (DUF6605); This entry represents a bacterial domain of unknown function often found associated with bacterial Ig-like domains.


Pssm-ID: 466405  Cd Length: 370  Bit Score: 336.21  E-value: 1.20e-103
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  101 SITIYRTGYYGGDGARKITTVTPsatlpqhQPSCITDVSTQLYDCGtWGVSASWDVPSTAVSGVYIARLRRSDtGGESHI 180
Cdd:pfam20254    1 TREVYRLGWYGGKGARLVWTSAP-------LTYGAIHFHTDLVDCN-WTTSFTFTVPADWRSGVYAAKLTTAD-GKQSYI 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  181 TFVVRNDASTSAVVAQTSDPTWHAYNMYGGSNFYRGGNN------GRAYQLSYNRPFATRDGTEARdFYFASEYPLVRFM 254
Cdd:pfam20254   72 PFVVRPPARRADLLVVLPTTTYQAYNNWGGYSLYDHSDGsgvaysSRARPVSFDRPYYRHWAFGAP-GYFFADLPFIRWL 150

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  255 EKNGYDVSYIAGVDSDRNGELLTNHRTFVSMGHDEYWSGAQRANVEAARDAGVNLMFLSGNEAYWRTRYEPSADPehtPG 334
Cdd:pfam20254  151 EREGYDVDYITDHDLHRGALLLGRYRAVLSGGHDEYWSLEMRDALEAARDAGGNLAFLGGNGFYWRVRLEPDRPH---VR 227

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  335 RILTSYKeTWSNDKIDPSPEWTGT--WRDPrfasklsGAGRPENGLTGTLYMSNDTDlPVTVSADEAklRLWRGTSLRsl 412
Cdd:pfam20254  228 RTMVCYK-TWSPDPGEYPHALTGEllWRDR-------GNPRPENSLLGVGYAAQGFG-PYVVTDPDH--WLFAGTGLK-- 294

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  413 aagaSAQLAPHTVGYESNEDLDNGArPPGLIRLSTTTgpapqyLQDFGNDvaEGTTTHHLTMYRAASGAlVFSAGSIQWT 492
Cdd:pfam20254  295 ----NGDFGGGLLGYEADRVDVLGS-PPGIVVLASSP------HVDYGNP--GGRVRADMTYYETGGGA-VFSAGSIQWA 360

                          410
                   ....*....|
gi 1380482450  493 WGLDATHDGN 502
Cdd:pfam20254  361 GGLAWNGYDN 370
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1433-1573 3.63e-61

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 205.58  E-value: 3.63e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1433 TPSVASLNDSSPVELGTAFSSSVDGTVTAIRFYKGPGNGGTHVGSLWSASGERLAMVTFTGEGASGWQTATLSTPVPITG 1512
Cdd:pfam13313    3 VPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSVTA 82

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1380482450 1513 GTTYVVSYYAPEGHYSVTPGFFAVPWTVGPLSARTSNNGVFAYGEGGGFPTGSYNATNYFV 1573
Cdd:pfam13313   83 GTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 1171-1313 3.07e-55

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 188.63  E-value: 3.07e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1171 DQVPQVPSVNDGSAVEVGTAFRPAKDGTITSIRFYKGPGNAGTHVGRLWSETGQQLASVTFTNETPTGWQTARLPQPVSV 1250
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450 1251 TAGTSYVVSYLAPQGHYASTGGFFANALTNGDLTAPAGKNGRYLYGSSGGLPIYDFNATSYFV 1313
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTAPSGGNGVYAYGAGGGFPTQSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 913-1051 2.10e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.81  E-value: 2.10e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  913 STTPTILQAADPSAVSLGVRFSADVPGTITGVKFYKGPNNTGSHTGALWTASGTQLAEGTFTDESTSGWQTLTFDEPVEI 992
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1380482450  993 AKNTEYVASYRAPAGMYSATPGDLAAERITAPLRT-SANGGSYTYG--SGFPA-TRTSTSYLV 1051
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTSGVTNGPLTApSGGNGVYAYGagGGFPTqSYNGSNYWV 143
DUF4082 pfam13313
Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain ...
 642-787 4.25e-44

Domain of unknown function (DUF4082); This domain is distantly related to the PHR domain pfam08005. This domain is often found between successive bacterial Ig domains, pfam13205.


Pssm-ID: 433109  Cd Length: 143  Bit Score: 157.04  E-value: 4.25e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  642 DEVPNVPAADDATNLELGLRFSPTTDGYVSGVRFYKGAGNTGTHVGSLWSSAGQKLAAVTFSGESSTGWQEATFASAVPV 721
Cdd:pfam13313    1 AAVPAVAAVDDGSPVELGVRFTSSVDGTVTGVRFYKGAGNTGTHTGSLWSATGTLLASVTFTNETASGWQTVTFATPVSV 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  722 TKDETYTVSYTAPNGHYAVKPHAFSAmGVKAHPLSVDGGYGAVRAgvHGAPGRMPDSAFRNSNYYV 787
Cdd:pfam13313   81 TAGTTYVVSYHAPSGRYAATAGYFTS-GVTNGPLTAPSGGNGVYA--YGAGGGFPTQSYNGSNYWV 143
Big_5 pfam13205
Bacterial Ig-like domain;
795-895 1.12e-13

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 68.56  E-value: 1.12e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450  795 DSSPLTVTSHWPLSGSTSVPLGSTVSATFSKPLAPGS--ATMTLTDANGSLVDGSTAYDAGSRTVTFTPSSELSGFVKYT 872
Cdd:pfam13205    1 DTTPPTVVSTTPADGATNVAVNSSITVTFSEAIDPATvnAAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYT 80

                           90       100
                   ....*....|....*....|....*
gi 1380482450  873 A--RAGGVDTQGNAVSSGARSSFTT 895
Cdd:pfam13205   81 VtiTAGIKDLAGNALAGPYTWSFTT 105
Big_5 pfam13205
Bacterial Ig-like domain;
1325-1418 1.65e-04

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 42.36  E-value: 1.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1325 TVRDVSPDSGDTDVQLASTVSATLSAPVAPG----YSLTVTNGTSEVAGTTSLSSDKETITFTPSARLPADTELTARL-R 1399
Cdd:pfam13205    6 TVVSTTPADGATNVAVNSSITVTFSEAIDPAtvnaAVVIVLSDGAGVPVTGTVSVDGKTVTITPSAALAANTTYTVTItA 85

                           90       100
                   ....*....|....*....|
gi 1380482450 1400 DVVSTEG-ASVADRTWTFRT 1418
Cdd:pfam13205   86 GIKDLAGnALAGPYTWSFTT 105
SO_family_Moco_dimer cd02110
Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved ...
 576-622 6.64e-04

Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).


Pssm-ID: 239028 [Multi-domain]  Cd Length: 317  Bit Score: 43.83  E-value: 6.64e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1380482450  576 VAGVEVSTDGGTTWHPAT------GTTS---WSYrYVQSGTGATPVMARAVDDSAN 622
Cdd:cd02110    238 IRRVEVSLDGGRTWQEARlegplaGPRAwrqWEL-DWDLPPGEYELVARATDSTGN 292
Big_5 pfam13205
Bacterial Ig-like domain;
1064-1126 1.40e-03

Bacterial Ig-like domain;


Pssm-ID: 463809 [Multi-domain]  Cd Length: 105  Bit Score: 39.67  E-value: 1.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1380482450 1064 ITAQDPPAGAVDVPRDTDIGVWFDDAIKPGATLDVT------SGGSPVTGTsrLSADATRLTFDPAGLL 1126
Cdd:pfam13205    7 VVSTTPADGATNVAVNSSITVTFSEAIDPATVNAAVvivlsdGAGVPVTGT--VSVDGKTVTITPSAAL 73
PRK15310 PRK15310
fimbrial outer membrane usher protein TcfC; Provisional
 1331-1438 2.62e-03

fimbrial outer membrane usher protein TcfC; Provisional


Pssm-ID: 185210 [Multi-domain]  Cd Length: 895  Bit Score: 42.68  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1380482450 1331 PDSGDTDVQLASTVSATLSAPVAP-----GYSLTVTNGTSEVAGTTSlSSDKETItFTPSARLPADTELTARLRDVVSTE 1405
Cdd:PRK15310   466 PQSVHASMTCQTSMNASLSVPVGNwyallGYSTSRTEGRPVYRGYDD-NSDKENV-FWRQAYIPASHRESAQASATYSLN 543

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1380482450 1406 --GASVADRTWTFRTEASGTTAHSLFAGSTPSVAS 1438
Cdd:PRK15310   544 maGMNINTHGGVWRTRNDGVNDDGLFMSVSVSYAS 578
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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