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Conserved domains on  [gi|1372089674|gb|AVR54721|]
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cytochrome b, partial (mitochondrion) [Gymnotus obscurus]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00131   21 LPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGR 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00131  341 MPVEHPFIIIGQVASVLYFSLFLVLMPL 368
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00131   21 LPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGR 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00131  341 MPVEHPFIIIGQVASVLYFSLFLVLMPL 368
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-348 1.58e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.96  E-value: 1.58e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   2 PAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGRG 81
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  82 LYYGSylYKE----TWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTR 157
Cdd:COG1290   111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 158 FFAFH-FLLPFTIIAMTLLHALFLHETGSNNPIG----LNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNllGD 232
Cdd:COG1290   189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 233 PENFTPANPLMTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVA 310
Cdd:COG1290   267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1372089674 311 DVAILTWIGGMPVehPFIIIGQIASILYFAIFLILFPL 348
Cdd:COG1290   347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-186 9.46e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.01  E-value: 9.46e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:cd00284    13 LPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSY--LYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRF 158
Cdd:cd00284    93 GLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRF 172

                         170       180
                  ....*....|....*....|....*...
gi 1372089674 159 FAFHFLLPFTIIAMTLLHALFLHETGSN 186
Cdd:cd00284   173 FALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-184 1.50e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.84  E-value: 1.50e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:pfam00033   4 LPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYG--SYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRF 158
Cdd:pfam00033  84 GLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRF 163

                         170       180
                  ....*....|....*....|....*.
gi 1372089674 159 FAFHFLLPFTIIAMTLLHALFLHETG 184
Cdd:pfam00033 164 FSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-310 2.19e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 216 LTALTALALFSPNLLGDPenftpANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHT-SKQQG 294
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 1372089674 295 LTFRPL--TQLLFWTLVA 310
Cdd:TIGR01156 123 PFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 717.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00131   21 LPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGR 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00131  101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00131  181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00131  261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00131  341 MPVEHPFIIIGQVASVLYFSLFLVLMPL 368
CYTB MTH00119
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.15  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00119   22 LPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00119  102 GLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00119  182 LHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00119  262 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00119  342 QPVEHPFIIIGQLASILYFTILLILFPL 369
CYTB MTH00074
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 647.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00074   22 LPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00074  102 GLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00074  182 FHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00074  262 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGG 341

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00074  342 QPVEDPFIEIGQAASILYFLLFIIIIPL 369
CYTB MTH00100
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 640.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00100   21 LPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGR 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00100  101 GLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00100  181 FHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00100  261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00100  341 QPVEHPFIIIGQLASILYFLIILILMPI 368
CYTB MTH00191
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 626.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00191   18 LPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGR 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00191   98 GLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00191  178 FHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPAN 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00191  258 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGG 337

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00191  338 QPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 599.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00156   11 LPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGR 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00156   91 GIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFT 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00156  171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00156  251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGA 330

                         330       340
                  ....*....|....*....|....*.
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILF 346
Cdd:MTH00156  331 RPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-348 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 579.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00034   21 LPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGR 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00034  101 GLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFA 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00034  181 FHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPAN 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00034  261 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGS 340

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00034  341 QPVEYPFILLGQVASVLYFSLFLFFFPL 368
CYTB MTH00145
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 573.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00145   22 LPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00145  102 GLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00145  182 LHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00145  262 PMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGA 341

                         330       340
                  ....*....|....*....|....*
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLIL 345
Cdd:MTH00145  342 CPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 541.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00016   22 LPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00016  102 GIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFA 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00016  182 LHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00016  262 PLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGG 341

                         330       340
                  ....*....|....*....|....*
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLIL 345
Cdd:MTH00016  342 RPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00022
cytochrome b; Validated
 1-348 1.66e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.91  E-value: 1.66e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00022   20 LPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGR 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00022  100 GLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFS 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00022  180 LHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQAN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00022  260 SLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGS 339

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00022  340 QVVEEPFILIGQLLSFFYFFYFLVLIPL 367
CYTB MTH00224
cytochrome b; Provisional
 1-344 3.24e-175

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 491.36  E-value: 3.24e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00224   22 LPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00224  102 GLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00224  182 FHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00224  262 PLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGG 341

                         330       340
                  ....*....|....*....|....
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLI 344
Cdd:MTH00224  342 RPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00053
cytochrome b; Provisional
 1-348 7.35e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 482.67  E-value: 7.35e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00053   22 LPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGR 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00053  102 GIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYS 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00053  182 LHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQAN 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00053  262 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGG 341

                         330       340
                  ....*....|....*....|....*...
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00053  342 QPVEEPYILIGQIASIFYFAYFLILMPL 369
CYTB MTH00033
cytochrome b; Provisional
 1-348 1.66e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 388.14  E-value: 1.66e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00033   18 LPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGR 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00033   98 GLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFS 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFS--PNLLGDPENFTP 238
Cdd:MTH00033  178 LHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQ 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 239 ANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTWI 318
Cdd:MTH00033  258 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWI 337

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1372089674 319 GGMPV-EHPFIIIGQIASILYFAIFLILFPL 348
Cdd:MTH00033  338 GSAPAgADPYVLIGRIATIFYFGYFLVLVPL 368
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-348 1.58e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 362.96  E-value: 1.58e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   2 PAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGRG 81
Cdd:COG1290    31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  82 LYYGSylYKE----TWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTR 157
Cdd:COG1290   111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 158 FFAFH-FLLPFTIIAMTLLHALFLHETGSNNPIG----LNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNllGD 232
Cdd:COG1290   189 FFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 233 PENFTPANPLMTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVA 310
Cdd:COG1290   267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1372089674 311 DVAILTWIGGMPVehPFIIIGQIASILYFAIFLILFPL 348
Cdd:COG1290   347 FFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPI 382
CYTB MTH00086
cytochrome b; Provisional
 1-346 5.16e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 347.70  E-value: 5.16e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00086   10 LPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00086   90 GLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTaLTALALFSPNLLGDPENFTPAN 240
Cdd:MTH00086  170 LHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEAD 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 241 PLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQqglTFRPLTQLLFWTLVADVAILTWIGG 320
Cdd:MTH00086  249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWLGQ 325

                         330       340
                  ....*....|....*....|....*.
gi 1372089674 321 MPVEHPFIIIGQIASILYFAIFLILF 346
Cdd:MTH00086  326 CLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-186 9.46e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.01  E-value: 9.46e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:cd00284    13 LPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSY--LYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRF 158
Cdd:cd00284    93 GLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRF 172

                         170       180
                  ....*....|....*....|....*...
gi 1372089674 159 FAFHFLLPFTIIAMTLLHALFLHETGSN 186
Cdd:cd00284   173 FALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-184 1.50e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.84  E-value: 1.50e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:pfam00033   4 LPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYG--SYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRF 158
Cdd:pfam00033  84 GLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRF 163

                         170       180
                  ....*....|....*....|....*.
gi 1372089674 159 FAFHFLLPFTIIAMTLLHALFLHETG 184
Cdd:pfam00033 164 FSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-346 2.51e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.14  E-value: 2.51e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   1 LPAPSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGR 80
Cdd:MTH00046   12 LPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  81 GLYYGSYLYKETWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFA 160
Cdd:MTH00046   92 ALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 161 FHFLLPFTIIAMTLLHALFLHETGSNNPIGL-NSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPA 239
Cdd:MTH00046  172 VHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEA 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 240 NPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVlALLSSILILMLVPllhtSKQQGLTFRPLTQLLFWTLVADVAILTWIG 319
Cdd:MTH00046  252 DPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLG 326

                         330       340
                  ....*....|....*....|....*..
gi 1372089674 320 GMPVEHPFIIIGQIASILyFAIFLILF 346
Cdd:MTH00046  327 GCHPEYPYLLISQLFSVL-MVLLLFIF 352
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
68-233 6.33e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 164.34  E-value: 6.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  68 SFFFICIYLHVGRGLYYGSYLYKE--TWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIW 145
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 146 GGFSVDNATLTRFFAFHF-LLPFTIIAMTLLHALFLHETGSNNPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALAL 224
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1372089674 225 FSPNLLGDP 233
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 187-334 8.79e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.89  E-value: 8.79e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 187 NPIGLNSDSDKIPFHPYFSYKDLLGFIIMLTALTALALFSPNLLGDPENFTPANPLMTPPHIKPEWYFLFAYAILRSIPN 266
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1372089674 267 KLGGVLALLSSILILMLVPLLHTSKQQGlTFRPLTQLLFWTLVADVAILTWIGGMPVEHPFIIIGQIA 334
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PRK03735 PRK03735
cytochrome b6; Provisional
 13-189 4.38e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 148.71  E-value: 4.38e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  13 FGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGRGLYYGSYLYKE- 91
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  92 -TWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAFH-FLLPFTI 169
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1372089674 170 IAMTLLHALFLHETGSNNPI 189
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
238-338 6.25e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 131.06  E-value: 6.25e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 238 PANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHTSKQQGLTFRPLTQLLFWTLVADVAILTW 317
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1372089674 318 IGGMPVEHPFIIIGQIASILY 338
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 4-189 3.20e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.91  E-value: 3.20e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674   4 PSNISAWWNFGSLLLLCIIMQIATGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHVGRGLY 83
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674  84 YGSYLYKE--TWNIGVILFLLTMTTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDALVQWIWGGFSVDNATLTRFFAF 161
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1372089674 162 H-FLLPFTIIAMTLLHALFLHETGSNNPI 189
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 209-309 1.15e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.73  E-value: 1.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 209 LLGFIIM--LTALTALALFSPNLLGDPenftpANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPL 286
Cdd:COG5679    40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100
                  ....*....|....*....|....*.
gi 1372089674 287 LHT-SKQQGLTFRPL--TQLLFWTLV 309
Cdd:COG5679   115 IENvNKFQNPFRRPVatAVFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 216-310 1.49e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.16  E-value: 1.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 216 LTALTALALFSPNLLGDPenftpANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLL-HTSKQQG 294
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                          90
                  ....*....|....*...
gi 1372089674 295 LTFRP--LTQLLFWTLVA 310
Cdd:CHL00058  123 PFRRPvaTTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-310 2.19e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.57  E-value: 2.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1372089674 216 LTALTALALFSPNLLGDPenftpANPLMTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLSSILILMLVPLLHT-SKQQG 294
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 1372089674 295 LTFRPL--TQLLFWTLVA 310
Cdd:TIGR01156 123 PFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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