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Conserved domains on  [gi|1370811467|gb|AVR17924|]
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DUF3331 domain-containing protein [Burkholderia vietnamiensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3331 super family cl13280
Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. ...
 58-130 2.32e-12

Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.


The actual alignment was detected with superfamily member pfam11811:

Pssm-ID: 432092  Cd Length: 91  Bit Score: 58.94  E-value: 2.32e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370811467  58 VKIVDRPSQGTLLVSWSDARRCVYLEQIWKLRVANKRGQCVLSGREIQIGSTVFMPFCRPR--PLNAGAMIIEEA 130
Cdd:pfam11811  13 IEVIEHLSESRVALLWHDATLCNYDDQVWIPALARQKGRCALSGAPIRRDDAIYKPQTRAQmpPANAAAMILASA 87
 
Name Accession Description Interval E-value
DUF3331 pfam11811
Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. ...
 58-130 2.32e-12

Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.


Pssm-ID: 432092  Cd Length: 91  Bit Score: 58.94  E-value: 2.32e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370811467  58 VKIVDRPSQGTLLVSWSDARRCVYLEQIWKLRVANKRGQCVLSGREIQIGSTVFMPFCRPR--PLNAGAMIIEEA 130
Cdd:pfam11811  13 IEVIEHLSESRVALLWHDATLCNYDDQVWIPALARQKGRCALSGAPIRRDDAIYKPQTRAQmpPANAAAMILASA 87
 
Name Accession Description Interval E-value
DUF3331 pfam11811
Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. ...
 58-130 2.32e-12

Domain of unknown function (DUF3331); This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.


Pssm-ID: 432092  Cd Length: 91  Bit Score: 58.94  E-value: 2.32e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370811467  58 VKIVDRPSQGTLLVSWSDARRCVYLEQIWKLRVANKRGQCVLSGREIQIGSTVFMPFCRPR--PLNAGAMIIEEA 130
Cdd:pfam11811  13 IEVIEHLSESRVALLWHDATLCNYDDQVWIPALARQKGRCALSGAPIRRDDAIYKPQTRAQmpPANAAAMILASA 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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