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Conserved domains on  [gi|1318676445|gb|AUI49408|]
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hypothetical protein BUN20_23140 (plasmid) [Bacteroides fragilis]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 106-208 4.94e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 137.68  E-value: 4.94e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 1318676445 186 SEPIADNTSESGRAKNRRVEMFI 208
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 106-208 4.94e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 137.68  E-value: 4.94e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 1318676445 186 SEPIADNTSESGRAKNRRVEMFI 208
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 103-209 7.21e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 140.69  E-value: 7.21e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEG 182
Cdd:COG2885   186 LSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVG 265

                          90       100
                  ....*....|....*....|....*..
gi 1318676445 183 KGYSEPIADNTSESGRAKNRRVEMFII 209
Cdd:COG2885   266 YGESRPVASNDTEEGRAKNRRVEIVVL 292
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 103-208 6.73e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.97  E-value: 6.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITEIPNtKIKIIGHTDNVGEK--EY--NIILSQNRAAAVGNYLRTIGIETNNI 178
Cdd:TIGR03350  29 RGDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVPIRtaRFpsNWHLSEARAKAVADVLAQAGGPAGRV 107

                          90       100       110
                  ....*....|....*....|....*....|
gi 1318676445 179 TEEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:TIGR03350 108 RAEGRGDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 108-201 1.95e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 1.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 108 FKFDSYELNEEAQKMLSDLCNIItEIPNTK--IKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLL-KFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 1318676445 186 SEPIADNTSESGRAKN 201
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
106-206 1.07e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 83.39  E-value: 1.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:PRK10510  114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                          90       100
                  ....*....|....*....|.
gi 1318676445 186 SEPIADNTSESGRAKNRRVEM 206
Cdd:PRK10510  194 ANPIASNSTAEGKAQNRRVEI 214
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 106-208 4.94e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 137.68  E-value: 4.94e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:cd07185     4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                          90       100
                  ....*....|....*....|...
gi 1318676445 186 SEPIADNTSESGRAKNRRVEMFI 208
Cdd:cd07185    84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 103-209 7.21e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 140.69  E-value: 7.21e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEG 182
Cdd:COG2885   186 LSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVG 265

                          90       100
                  ....*....|....*....|....*..
gi 1318676445 183 KGYSEPIADNTSESGRAKNRRVEMFII 209
Cdd:COG2885   266 YGESRPVASNDTEEGRAKNRRVEIVVL 292
MotB COG1360
Flagellar motor protein MotB [Cell motility];
103-208 5.99e-27

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 101.07  E-value: 5.99e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITEIPNtKIKIIGHTDNV---GEKEY-NIILSQNRAAAVGNYLRTIGIETNNI 178
Cdd:COG1360    58 QDRVLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNVpisTARFPsNWELSAARAAAVVRYLIEGGVPPERL 136

                          90       100       110
                  ....*....|....*....|....*....|
gi 1318676445 179 TEEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:COG1360   137 SAVGYGDTRPLAPNDTPEGRARNRRVEIVI 166
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 103-208 6.73e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.97  E-value: 6.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITEIPNtKIKIIGHTDNVGEK--EY--NIILSQNRAAAVGNYLRTIGIETNNI 178
Cdd:TIGR03350  29 RGDELFASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNVPIRtaRFpsNWHLSEARAKAVADVLAQAGGPAGRV 107

                          90       100       110
                  ....*....|....*....|....*....|
gi 1318676445 179 TEEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:TIGR03350 108 RAEGRGDSEPIASNATAAGRARNRRVEIDV 137
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 106-206 1.20e-21

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 85.30  E-value: 1.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|.
gi 1318676445 186 SEPIADNTSESGRAKNRRVEM 206
Cdd:TIGR02802  82 EKPAALGHDEAAWAKNRRAVL 102
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 108-201 1.95e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 1.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 108 FKFDSYELNEEAQKMLSDLCNIItEIPNTK--IKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLL-KFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 1318676445 186 SEPIADNTSESGRAKN 201
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
106-206 1.07e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 83.39  E-value: 1.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGY 185
Cdd:PRK10510  114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                          90       100
                  ....*....|....*....|.
gi 1318676445 186 SEPIADNTSESGRAKNRRVEM 206
Cdd:PRK10510  194 ANPIASNSTAEGKAQNRRVEI 214
PRK09967 PRK09967
OmpA family protein;
106-208 1.83e-16

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 73.47  E-value: 1.83e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGN-YLRTIGIETNNITEEGKG 184
Cdd:PRK09967   54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQGLG 133

                          90       100
                  ....*....|....*....|....
gi 1318676445 185 YSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK09967  134 KKYPIASNKTAQGRAENRRVAVVI 157
PRK10808 PRK10808
outer membrane protein A; Reviewed
 101-205 3.93e-16

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 75.50  E-value: 3.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 101 TAQSEILFKFDSYELNEEAQKMLSDLCNIITEI-PNT-KIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLRTIGIETNNI 178
Cdd:PRK10808  221 TLKSDVLFNFNKATLKPEGQQALDQLYSQLSNLdPKDgSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKI 300

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1318676445 179 TEEGKGYSEPIADNTSESGRAK---------NRRVE 205
Cdd:PRK10808  301 SARGMGKSNPVTGNTCDNVKPRaalidclapDRRVE 336
PRK08126 PRK08126
hypothetical protein; Provisional
 137-208 2.04e-15

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 73.96  E-value: 2.04e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1318676445 137 KIKIIGHTDNV----GEKEYNIILSQNRAAAVGNYLRTIGIETNNITEEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK08126  355 KVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
PRK09039 PRK09039
peptidoglycan -binding protein;
103-206 1.19e-14

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 71.15  E-value: 1.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 103 QSEILFKFDSYELNEEAQKMLSDLCNIITE----IP---NTKIKIIGHTDNV---GEKEY--NIILSQNRAAAVGNYLRT 170
Cdd:PRK09039  223 QSEVLFPTGSAELNPEGQAEIAKLAAALIElakeIPpeiNWVLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIA 302

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1318676445 171 IGIETNNITEEGKGYSEPIADNTSESGRAKNRRVEM 206
Cdd:PRK09039  303 LGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 104-208 3.14e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 69.65  E-value: 3.14e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 104 SEILFKFDSYELNEEAQKMLSDLCNIITEIPNTkIKIIGHTDNV--GEKEY--NIILSQNRAAAVGNYLRTIGIETNNIT 179
Cdd:PRK09038  133 SSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNP-IHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLA 211

                          90       100
                  ....*....|....*....|....*....
gi 1318676445 180 EEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK09038  212 AVGYGEFQPVADNDTAEGRARNRRVVLVI 240
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
91-203 2.28e-13

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 65.28  E-value: 2.28e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445  91 DKNGKEQFKATAQSEIL-FKFDSYELNEEAQKMLSDLCNIITEIPNTKIKIIGHTDNVGEKEYNIILSQNRAAAVGNYLR 169
Cdd:PRK10802   55 EEQARLQMQQLQQNNIVyFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQ 134

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1318676445 170 TIGIETNNITEEGKGYSEPIADNTSESGRAKNRR 203
Cdd:PRK10802  135 GKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168
motB PRK07734
flagellar motor protein MotB; Reviewed
 55-209 2.94e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 60.91  E-value: 2.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445  55 AAKLVKEERDKAIQEKLEARRNKLKAIDGLTiSSYKDKNGKEQFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIP 134
Cdd:PRK07734   94 EEAEAKKKKEMEELKAVQKKIDQYIKEKQLS-SSLQTKLTEEGLLITILDNILFDSGKADVRLEDLPLAKEISNLLVSNP 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 135 NTKIKIIGHTDNV----GEKEYNIILSQNRAAavgNYLRTIgIETNNITEE---GKGYSE--PIADNTSESGRAKNRRVE 205
Cdd:PRK07734  173 PRNITISGHTDNVpianAQFASNWELSVMRAV---NFMQVL-LENKELDPEkfsAKGYGEykPIASNDTAEGRAKNRRVE 248


                  ....
gi 1318676445 206 MFII 209
Cdd:PRK07734  249 VLIL 252
motB PRK08944
flagellar motor protein MotB; Reviewed
 107-208 3.14e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 61.18  E-value: 3.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 107 LFKFDSYELNEEAQKMLSDLCNIITEIPNtKIKIIGHTDNVG--EKEY--NIILSQNRAAAVGNYLRTI-GIETNNITEE 181
Cdd:PRK08944  182 SFPSGSAFLQPKFKPVVRKIGELLKDVPG-IITVSGHTDNVPisSELYrsNWDLSSARAVAVAHELLKVkGFDPQRLKVV 260

                          90       100
                  ....*....|....*....|....*..
gi 1318676445 182 GKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK08944  261 GMADTQPLVPNDTAENRARNRRVEIII 287
motB PRK08457
flagellar motor protein MotB; Reviewed
 104-211 4.49e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 60.50  E-value: 4.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 104 SEILFKFDSYEL-NEEAQKMLSDLCNIITEIP-NTKIKIIGHTDN--VGEKEY--NIILSQNRAAAVGNYLRTIGIETNN 177
Cdd:PRK08457  122 SKLLFENGSAEIiNADMMDYLKRIAKIITKLPkQVKINVRGYTDNspLNKSRYkdHYELAAARAYNVMKVLIQYGINPNR 201

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1318676445 178 ITEEGKGYSEPIADNTSESGRAKNRRVEMFIICD 211
Cdd:PRK08457  202 LSFSSYGSNNPIAPNDSLENRLKNNRVEIFFKVD 235
PRK07033 PRK07033
DotU family type VI secretion system protein;
137-205 1.22e-10

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 60.06  E-value: 1.22e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1318676445 137 KIKIIGHTDNVGEKEY----NIILSQNRAAAVGNYLRTIGIETNNITEEGKGYSEPIADNTSESGRAKNRRVE 205
Cdd:PRK07033  346 NVLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVE 418
PRK06925 PRK06925
flagellar motor protein MotB;
65-208 3.72e-10

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 57.47  E-value: 3.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445  65 KAIQEKLEArrNKLKAIdgltISSYKDKNGkeqFKATAQSEILFKFDSYELNEEAQKMLSDLCNIITEIPNtKIKIIGHT 144
Cdd:PRK06925   88 KKVNEYIEE--NELKSV----ITAKRDERG---VVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHT 157

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1318676445 145 DNVGEKEY----NIILSQNRAAAVGNYLrtigIETNNITEE-----GKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK06925  158 DSRPISTYrypsNWELSAARASSVIRYF----TSKEKLDSSrfiavGYADTKPVVPNTTEENMQENRRVEIVI 226
PRK07034 PRK07034
hypothetical protein; Provisional
 138-207 4.82e-09

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 55.57  E-value: 4.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 138 IKIIGHTDNVGEKEY----NIILSQNRAAAVGNYLRtigiETNNITEE--------GKGYSEPIADNTSESGRAKNRRVE 205
Cdd:PRK07034  429 IEVIGHTDNKPFRSTsgnnNLKLSAARASVVADKLR----ESTQINEThqreisaiGRGESDPLADNATEEGRKRNRRVD 504


                  ..
gi 1318676445 206 MF 207
Cdd:PRK07034  505 IL 506
PRK09040 PRK09040
hypothetical protein; Provisional
 106-206 2.28e-07

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 49.63  E-value: 2.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 106 ILFKFDSYELNEEAQKMLSDLCNIITEIPNTKIKII---GHTDNV----GEKEY--NIILSQNRAAAVGNYLRTIGIETN 176
Cdd:PRK09040   90 VLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEILmvsGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPAS 169

                          90       100       110
                  ....*....|....*....|....*....|
gi 1318676445 177 NITEEGKGYSEPIADNTSESGRAKNRRVEM 206
Cdd:PRK09040  170 SVFAAAFGSEQPVASNADDEGRAKNRRVEI 199
motB PRK06667
flagellar motor protein MotB; Validated
 104-211 1.07e-06

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 47.87  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445 104 SEILFKFDSYELN-EEAQKMLSDLCNIITEIPNT--KIKIIGHTDNV-----GEKEYNIILSQNRAAAVGNYLRTIG-IE 174
Cdd:PRK06667  125 SDAFFYPGSAEVKlEENRETLQKIASFIGFLDLAgrNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGdQS 204

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1318676445 175 TNNITEEGKGYSEPIADNTSESGRAKNRRVEMFIICD 211
Cdd:PRK06667  205 ESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILTD 241
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 68-208 9.42e-06

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 45.05  E-value: 9.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445  68 QEKLEARRNKLKAIDGL--TISSYKDKNGKEQFKA----TAQSEILFK---FDSYELN--EEAQKMLSDLCNIITEIPNT 136
Cdd:PRK06742   68 HEKNDEKMISKKRMDELykKLKAYVDNNGISQVNVyredTGVSVVIVDnliFDTGDANvkPEAKEIISQLVGFFQSVPNP 147

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1318676445 137 kIKIIGHTDN--VGEKEY--NIILSQNRAAAVGNYLRTI-GIETNNITEEGKGYSEPIADNTSESGRAKNRRVEMFI 208
Cdd:PRK06742  148 -IVVEGHTDSrpIHNDKFpsNWELSSARAANMIHHLIEVyNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
motB PRK09041
motility protein MotB;
55-163 7.94e-05

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 42.62  E-value: 7.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1318676445  55 AAKLVKEERDKAIQEKLEARRNKL-KAIDgltiSSYKDKNGKEQFKATAQSEIL------------FKFDSYELNEEAQK 121
Cdd:PRK09041  103 IAELAQGEKERREQERLEKLKQELdQAIE----SNPKLRQFKPQLLIDLTQEGLriqivdsqnrpmFATGSAEVEPYMRD 178

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1318676445 122 MLSDLCNIITEIPNtKIKIIGHTDNV----GEKEY-NIILSQNRAAA 163
Cdd:PRK09041  179 ILREIAPVLNDVPN-RISLSGHTDATpyanGEKGYsNWELSADRANA 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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