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Conserved domains on  [gi|1314841066|gb|AUF97884|]
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transcriptional regulator [Pseudomonas sp. 02C 26]

Protein Classification

alginate export family protein( domain architecture ID 10596259)

alginate export family protein similar to Pseudomonas AlgE, which shows non-porin-like, channel-forming properties and may function as an alginate permeability pore

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Alginate_exp pfam13372
Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as ...
 30-487 2.02e-109

Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.


:

Pssm-ID: 433155  Cd Length: 394  Bit Score: 330.10  E-value: 2.02e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066  30 EKNFGLDVKITGQSEDDRDLGTRSGGDVQGLGLDLRPWVYGERGNwsafAMGQAVAATDTIETDTLRQSDdgstvdtaad 109
Cdd:pfam13372   1 YLSFGLDLRERFESESARDLGTRSNGDDNYLLRRLRVHADLEIGD----RMRAFVELEDARRFGKLLQSS---------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 110 GRKADKSYLAMREFWVGYS-GFTAYPGEqLRLGRQRLRNDDGMWrdsnIEALNW-----TFDTTLLRAnlgmaqRFSEYR 183
Cdd:pfam13372  67 VRPVDKNRLDLRQAFVEYGkGLGPGPFE-LRVGRQELAFDDQRL----ISVRDWpntrqTFDGIWLNW------ETGEWR 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 184 TDLTELAP--------EDKDRTHFYGDVATQWTPGHWVGLRAHHTHDSGSLKNTgesldgLDKRRTGDLTWLGLEANSDA 255
Cdd:pfam13372 136 LDLFELQPvqyrrsfdDTSDRNHLFSGLRGEWRPLGPIGLSAYYSRYNRDGARF------LDATGDGHRHTLGLRAAGDA 209

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 256 YNwrnqHTVNYWGSLTWLTGDRdklnselvgneqvatGKQSGDVNAWATDLGIRL---RLDPQWQVGAAYARGSggggsk 332
Cdd:pfam13372 210 YN----TPLDYDLELMYQTGRV---------------GTQVIDAWAVGSDAGYTLkglPWKPRLGVGYDYASGD------ 264

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 333 gsNNYEQTGLESNRSSFTGTRsrvHRFGEAFRGELGNLQAATLFASWQLRDDYDASLIYHKFWRVNGQQNIGSSGINAVV 412
Cdd:pfam13372 265 --RNPTDGGLETFNPLFPGGR---HYFGEADYTGYSNLQHLKLFLTWQPADDLDLDAAYHLFWRADTADAIYNSGNNAVR 339

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314841066 413 DDEGvnrplvNGEKDLGQEMDVVVTkyfkqgllpaslsqSIDEPSALVRLRAGVFKPGDAYGKEADSYMHRAFVD 487
Cdd:pfam13372 340 DAAG------QSGKDTGQELDLRAD--------------YKLEPHLLLAIGAGHFKPGDFLRNAGGSTSHRRGVD 394
 
Name Accession Description Interval E-value
Alginate_exp pfam13372
Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as ...
 30-487 2.02e-109

Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.


Pssm-ID: 433155  Cd Length: 394  Bit Score: 330.10  E-value: 2.02e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066  30 EKNFGLDVKITGQSEDDRDLGTRSGGDVQGLGLDLRPWVYGERGNwsafAMGQAVAATDTIETDTLRQSDdgstvdtaad 109
Cdd:pfam13372   1 YLSFGLDLRERFESESARDLGTRSNGDDNYLLRRLRVHADLEIGD----RMRAFVELEDARRFGKLLQSS---------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 110 GRKADKSYLAMREFWVGYS-GFTAYPGEqLRLGRQRLRNDDGMWrdsnIEALNW-----TFDTTLLRAnlgmaqRFSEYR 183
Cdd:pfam13372  67 VRPVDKNRLDLRQAFVEYGkGLGPGPFE-LRVGRQELAFDDQRL----ISVRDWpntrqTFDGIWLNW------ETGEWR 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 184 TDLTELAP--------EDKDRTHFYGDVATQWTPGHWVGLRAHHTHDSGSLKNTgesldgLDKRRTGDLTWLGLEANSDA 255
Cdd:pfam13372 136 LDLFELQPvqyrrsfdDTSDRNHLFSGLRGEWRPLGPIGLSAYYSRYNRDGARF------LDATGDGHRHTLGLRAAGDA 209

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 256 YNwrnqHTVNYWGSLTWLTGDRdklnselvgneqvatGKQSGDVNAWATDLGIRL---RLDPQWQVGAAYARGSggggsk 332
Cdd:pfam13372 210 YN----TPLDYDLELMYQTGRV---------------GTQVIDAWAVGSDAGYTLkglPWKPRLGVGYDYASGD------ 264

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 333 gsNNYEQTGLESNRSSFTGTRsrvHRFGEAFRGELGNLQAATLFASWQLRDDYDASLIYHKFWRVNGQQNIGSSGINAVV 412
Cdd:pfam13372 265 --RNPTDGGLETFNPLFPGGR---HYFGEADYTGYSNLQHLKLFLTWQPADDLDLDAAYHLFWRADTADAIYNSGNNAVR 339

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314841066 413 DDEGvnrplvNGEKDLGQEMDVVVTkyfkqgllpaslsqSIDEPSALVRLRAGVFKPGDAYGKEADSYMHRAFVD 487
Cdd:pfam13372 340 DAAG------QSGKDTGQELDLRAD--------------YKLEPHLLLAIGAGHFKPGDFLRNAGGSTSHRRGVD 394
 
Name Accession Description Interval E-value
Alginate_exp pfam13372
Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as ...
 30-487 2.02e-109

Alginate export; This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.


Pssm-ID: 433155  Cd Length: 394  Bit Score: 330.10  E-value: 2.02e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066  30 EKNFGLDVKITGQSEDDRDLGTRSGGDVQGLGLDLRPWVYGERGNwsafAMGQAVAATDTIETDTLRQSDdgstvdtaad 109
Cdd:pfam13372   1 YLSFGLDLRERFESESARDLGTRSNGDDNYLLRRLRVHADLEIGD----RMRAFVELEDARRFGKLLQSS---------- 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 110 GRKADKSYLAMREFWVGYS-GFTAYPGEqLRLGRQRLRNDDGMWrdsnIEALNW-----TFDTTLLRAnlgmaqRFSEYR 183
Cdd:pfam13372  67 VRPVDKNRLDLRQAFVEYGkGLGPGPFE-LRVGRQELAFDDQRL----ISVRDWpntrqTFDGIWLNW------ETGEWR 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 184 TDLTELAP--------EDKDRTHFYGDVATQWTPGHWVGLRAHHTHDSGSLKNTgesldgLDKRRTGDLTWLGLEANSDA 255
Cdd:pfam13372 136 LDLFELQPvqyrrsfdDTSDRNHLFSGLRGEWRPLGPIGLSAYYSRYNRDGARF------LDATGDGHRHTLGLRAAGDA 209

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 256 YNwrnqHTVNYWGSLTWLTGDRdklnselvgneqvatGKQSGDVNAWATDLGIRL---RLDPQWQVGAAYARGSggggsk 332
Cdd:pfam13372 210 YN----TPLDYDLELMYQTGRV---------------GTQVIDAWAVGSDAGYTLkglPWKPRLGVGYDYASGD------ 264

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1314841066 333 gsNNYEQTGLESNRSSFTGTRsrvHRFGEAFRGELGNLQAATLFASWQLRDDYDASLIYHKFWRVNGQQNIGSSGINAVV 412
Cdd:pfam13372 265 --RNPTDGGLETFNPLFPGGR---HYFGEADYTGYSNLQHLKLFLTWQPADDLDLDAAYHLFWRADTADAIYNSGNNAVR 339

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1314841066 413 DDEGvnrplvNGEKDLGQEMDVVVTkyfkqgllpaslsqSIDEPSALVRLRAGVFKPGDAYGKEADSYMHRAFVD 487
Cdd:pfam13372 340 DAAG------QSGKDTGQELDLRAD--------------YKLEPHLLLAIGAGHFKPGDFLRNAGGSTSHRRGVD 394
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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