NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1278174684|gb|ATV98710|]
View 

50S ribosomal protein L2 (chloroplast) [Eschweilera caudiculata]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
rpl2 CHL00052
ribosomal protein L2
1-274 0e+00

ribosomal protein L2


:

Pssm-ID: 176993  Cd Length: 273  Bit Score: 519.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   1 MAIHLYKTSNPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIE 80
Cdd:CHL00052    1 MAIRLYKTYTPGTRNRSVDEQVKSNPRKNLIYGQHRCGKGRNNRGIITARHRGGGHKRLYRKIDFRRNKKDIYGRIVTIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  81 YDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLsTDMPLGTAIHNIEITLGRGGQLVRAAGAV 160
Cdd:CHL00052   81 YDPNRNAYICLIHYGDGEKRYILHPRGLKIGDTIVSGTEAPIKIGNALPL-TNIPLGTAIHNIEITPGKGGQLARAAGAV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 161 AKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPI 240
Cdd:CHL00052  160 AKLIAKEGKSATLKLPSGEVRLISKNCSATIGQVGNVDVNNKSLGKAGSKRWLGKRPKVRGVVMNPVDHPHGGGEGRAPI 239
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1278174684 241 GRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 274
Cdd:CHL00052  240 GRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
 
Name Accession Description Interval E-value
rpl2 CHL00052
ribosomal protein L2
1-274 0e+00

ribosomal protein L2


Pssm-ID: 176993  Cd Length: 273  Bit Score: 519.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   1 MAIHLYKTSNPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIE 80
Cdd:CHL00052    1 MAIRLYKTYTPGTRNRSVDEQVKSNPRKNLIYGQHRCGKGRNNRGIITARHRGGGHKRLYRKIDFRRNKKDIYGRIVTIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  81 YDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLsTDMPLGTAIHNIEITLGRGGQLVRAAGAV 160
Cdd:CHL00052   81 YDPNRNAYICLIHYGDGEKRYILHPRGLKIGDTIVSGTEAPIKIGNALPL-TNIPLGTAIHNIEITPGKGGQLARAAGAV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 161 AKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPI 240
Cdd:CHL00052  160 AKLIAKEGKSATLKLPSGEVRLISKNCSATIGQVGNVDVNNKSLGKAGSKRWLGKRPKVRGVVMNPVDHPHGGGEGRAPI 239
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1278174684 241 GRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 274
Cdd:CHL00052  240 GRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
RplB COG0090
Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 ...
1-275 2.45e-144

Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439860 [Multi-domain]  Cd Length: 276  Bit Score: 405.96  E-value: 2.45e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   1 MAIHLYKTSNPSTRNGTV--DSQV-KSNPRNNLIYGQHRCGkGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 77
Cdd:COG0090     1 MAIKKYKPTTPGRRFMVVvdFSELtKGKPEKSLLEPLKKSG-GRNNQGRITVRHRGGGHKRKYRIIDFKRNKDGIPAKVA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAA 157
Cdd:COG0090    80 RIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVVSGEDADIKPGNALPLK-NIPVGTIVHNIELKPGKGGQLARSA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 158 GAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 237
Cdd:COG0090   159 GTSAQLMAKEGKYATLRLPSGEVRKVLAECRATIGQVGNSDHENISLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGR 238
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1278174684 238 APIGRkKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 275
Cdd:COG0090   239 TSGGR-HPVSPWGKPTKGYKTRKKNKRSDKFIVRRRKK 275
rplB_bact TIGR01171
ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ...
3-275 1.77e-136

ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273481 [Multi-domain]  Cd Length: 273  Bit Score: 385.89  E-value: 1.77e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   3 IHLYKTSNPSTRNGTV---DSQVKSNPRNNLIYGQHRCGkGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTI 79
Cdd:TIGR01171   1 IKKYKPTTPGRRGAVVsdfAEITKGKPEKSLLEKLHKTG-GRNNRGRITSRHRGGGHKRLYRIIDFKRDKDGIPAKVATI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  80 EYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTdMPLGTAIHNIEITLGRGGQLVRAAGA 159
Cdd:TIGR01171  80 EYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVISGPEAPIKPGNALPLRN-IPVGTTVHNIELKPGKGGQLARSAGT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 160 VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAP 239
Cdd:TIGR01171 159 SAQILAKEGKYVTLRLPSGEMRMVLKECRATIGEVGNEDHNNIVLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGRTP 238
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1278174684 240 IGRkKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 275
Cdd:TIGR01171 239 IGR-HPVTPWGKPTKGYKTRKKKKYSDKFIVRRRKK 273
Ribosomal_L2_C pfam03947
Ribosomal Proteins L2, C-terminal domain;
123-247 2.20e-65

Ribosomal Proteins L2, C-terminal domain;


Pssm-ID: 427606  Cd Length: 123  Bit Score: 199.91  E-value: 2.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 123 KMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQK 202
Cdd:pfam03947   1 KPGNALPLK-NIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGKYVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNK 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1278174684 203 SLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPiGRKKPTT 247
Cdd:pfam03947  80 PLGKAGRKRWLGRRPTVRGVAMNPVDHPHGGGEGRTV-GRKHPVS 123
 
Name Accession Description Interval E-value
rpl2 CHL00052
ribosomal protein L2
1-274 0e+00

ribosomal protein L2


Pssm-ID: 176993  Cd Length: 273  Bit Score: 519.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   1 MAIHLYKTSNPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIE 80
Cdd:CHL00052    1 MAIRLYKTYTPGTRNRSVDEQVKSNPRKNLIYGQHRCGKGRNNRGIITARHRGGGHKRLYRKIDFRRNKKDIYGRIVTIE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  81 YDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLsTDMPLGTAIHNIEITLGRGGQLVRAAGAV 160
Cdd:CHL00052   81 YDPNRNAYICLIHYGDGEKRYILHPRGLKIGDTIVSGTEAPIKIGNALPL-TNIPLGTAIHNIEITPGKGGQLARAAGAV 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 161 AKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPI 240
Cdd:CHL00052  160 AKLIAKEGKSATLKLPSGEVRLISKNCSATIGQVGNVDVNNKSLGKAGSKRWLGKRPKVRGVVMNPVDHPHGGGEGRAPI 239
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1278174684 241 GRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRS 274
Cdd:CHL00052  240 GRKKPVTPWGKPALGRKTRKRKKYSDNLILRRRK 273
RplB COG0090
Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 ...
1-275 2.45e-144

Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L2 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439860 [Multi-domain]  Cd Length: 276  Bit Score: 405.96  E-value: 2.45e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   1 MAIHLYKTSNPSTRNGTV--DSQV-KSNPRNNLIYGQHRCGkGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 77
Cdd:COG0090     1 MAIKKYKPTTPGRRFMVVvdFSELtKGKPEKSLLEPLKKSG-GRNNQGRITVRHRGGGHKRKYRIIDFKRNKDGIPAKVA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAA 157
Cdd:COG0090    80 RIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVVSGEDADIKPGNALPLK-NIPVGTIVHNIELKPGKGGQLARSA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 158 GAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 237
Cdd:COG0090   159 GTSAQLMAKEGKYATLRLPSGEVRKVLAECRATIGQVGNSDHENISLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGR 238
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1278174684 238 APIGRkKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 275
Cdd:COG0090   239 TSGGR-HPVSPWGKPTKGYKTRKKNKRSDKFIVRRRKK 275
rplB_bact TIGR01171
ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ...
3-275 1.77e-136

ribosomal protein L2, bacterial/organellar; This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273481 [Multi-domain]  Cd Length: 273  Bit Score: 385.89  E-value: 1.77e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684   3 IHLYKTSNPSTRNGTV---DSQVKSNPRNNLIYGQHRCGkGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTI 79
Cdd:TIGR01171   1 IKKYKPTTPGRRGAVVsdfAEITKGKPEKSLLEKLHKTG-GRNNRGRITSRHRGGGHKRLYRIIDFKRDKDGIPAKVATI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  80 EYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTdMPLGTAIHNIEITLGRGGQLVRAAGA 159
Cdd:TIGR01171  80 EYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVISGPEAPIKPGNALPLRN-IPVGTTVHNIELKPGKGGQLARSAGT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 160 VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAP 239
Cdd:TIGR01171 159 SAQILAKEGKYVTLRLPSGEMRMVLKECRATIGEVGNEDHNNIVLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGRTP 238
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1278174684 240 IGRkKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 275
Cdd:TIGR01171 239 IGR-HPVTPWGKPTKGYKTRKKKKYSDKFIVRRRKK 273
PTZ00031 PTZ00031
ribosomal protein L2; Provisional
40-273 7.97e-74

ribosomal protein L2; Provisional


Pssm-ID: 173329 [Multi-domain]  Cd Length: 317  Bit Score: 228.19  E-value: 7.97e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  40 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTE 119
Cdd:PTZ00031   73 GRNNVGRITTRHRGGGHVQRLRFIDFKRSRKDIYSTVLRIEYDPSRSAHIALLQYEDGVLSYILAPLLLRPGDKIIASKY 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 120 VPIKMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGV 199
Cdd:PTZ00031  153 ANINPGNSLPLR-NIPVGSIVHNVEMRPGAGGQIIRAGGTYATVVSKDEQFATLKLKSTEIRKFPLDCWATIGQVSNLEH 231
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1278174684 200 NQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRApiGRKKP-TTPWGYPALGRRSRKRNKYSdNLILRRR 273
Cdd:PTZ00031  232 HMRILGKAGVNRWLGKRPVVRGVAMNPSKHPHGGGTSKK--GTKRPkCSLWGICRDGYKTRSKKKPL-GLIIRRK 303
Ribosomal_L2_C pfam03947
Ribosomal Proteins L2, C-terminal domain;
123-247 2.20e-65

Ribosomal Proteins L2, C-terminal domain;


Pssm-ID: 427606  Cd Length: 123  Bit Score: 199.91  E-value: 2.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 123 KMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQK 202
Cdd:pfam03947   1 KPGNALPLK-NIPEGTIVHNIELKPGDGGQLARSAGTYAQIVAKEGKYVTVRLPSGEVRLVSSDCRATIGVVSNGGHKNK 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1278174684 203 SLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPiGRKKPTT 247
Cdd:pfam03947  80 PLGKAGRKRWLGRRPTVRGVAMNPVDHPHGGGEGRTV-GRKHPVS 123
rpl2p PRK09612
50S ribosomal protein L2P; Validated
41-243 8.48e-48

50S ribosomal protein L2P; Validated


Pssm-ID: 236589 [Multi-domain]  Cd Length: 238  Bit Score: 158.86  E-value: 8.48e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  41 RNARGIITagHRGGGHKRL----YRKIDFrrnEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVS 116
Cdd:PRK09612    9 RRGRGTPT--FRSPSHRYKgpvkYPPLDK---DGTLRGKVVDILHDPGRNAPVAKVKFENGEEFLILAPEGLYVGQEIEI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 117 GTEVPIKMGNALPLStDMPLGTAIHNIEITLGRGGQLVRAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN 196
Cdd:PRK09612   84 GPSAEIKPGNTLPLG-EIPEGTPVCNIESRPGDGGKFARSSGTYALVVGHEGDKVIVQLPSGKIKELNPRCRATIGVVAG 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1278174684 197 VGVNQKSLGRAGSKRWL-----GKRPVVRGVVMNPVDHPHGGGE----GR-------APIGRK 243
Cdd:PRK09612  163 GGRKEKPFLKAGKKYHKmkakaKKWPRVRGVAMNAVDHPHGGGNhqhpGRpstvsrnAPPGRK 225
Ribosomal_L2 pfam00181
Ribosomal Proteins L2, RNA binding domain;
40-116 1.05e-32

Ribosomal Proteins L2, RNA binding domain;


Pssm-ID: 395129 [Multi-domain]  Cd Length: 77  Bit Score: 114.63  E-value: 1.05e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1278174684  40 GRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVS 116
Cdd:pfam00181   1 GRNNPGRITSRHRGGGHKKKYRLIDFKRNKDDVKGKVVEIEYDPNRNAPIALVKYEDGEKRYILAPEGLKVGDTVES 77
PTZ00180 PTZ00180
60S ribosomal protein L8; Provisional
41-234 1.43e-29

60S ribosomal protein L8; Provisional


Pssm-ID: 173464 [Multi-domain]  Cd Length: 260  Bit Score: 112.13  E-value: 1.43e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684  41 RNARGIITAGHrggGHKRL----YRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGE-----KRYILHPRGAIIG 111
Cdd:PTZ00180    9 RKGNGSVFKAH---GHKRLgpakLRILDYAERHGYIRGVVKDIEHDPGRGAPLARVEFRDPYkykrvKELMVAPEGMYTG 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174684 112 DTIVSGTEVPIKMGNALPLSTdMPLGTAIHNIEITLGRGGQLVRAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSA 189
Cdd:PTZ00180   86 QYVYCGAKAPLAIGNVLPLGQ-IPEGTIVCNVEEKPGDRGTLARASGCYATIIGHsdDGGKTRIRLPSGQKKTVSSLSRA 164
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1278174684 190 TVGQVGNVGVNQKSLGRAGSK--RWLGKR---PVVRGVVMNPVDHPHGGG 234
Cdd:PTZ00180  165 MIGIVAGGGRIDKPVLKAGNAfhKYRGKRncwPKVRGVAMNPVEHPHGGG 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH