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Conserved domains on  [gi|1278174681|gb|ATV98707|]
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Ycf15 (chloroplast) [Eschweilera caudiculata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf15 super family cl11302
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-82 1.91e-48

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


The actual alignment was detected with superfamily member pfam10705:

Pssm-ID: 463179  Cd Length: 86  Bit Score: 147.92  E-value: 1.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174681  2 ETFLSSIFWILAPWNNMLLLKHGRIEILDQNTMYGWYELPKQELLNSEQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 .
gi 1278174681 82 Y 82
Cdd:pfam10705 81 Y 81
 
Name Accession Description Interval E-value
Ycf15 pfam10705
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-82 1.91e-48

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


Pssm-ID: 463179  Cd Length: 86  Bit Score: 147.92  E-value: 1.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174681  2 ETFLSSIFWILAPWNNMLLLKHGRIEILDQNTMYGWYELPKQELLNSEQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 .
gi 1278174681 82 Y 82
Cdd:pfam10705 81 Y 81
 
Name Accession Description Interval E-value
Ycf15 pfam10705
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-82 1.91e-48

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


Pssm-ID: 463179  Cd Length: 86  Bit Score: 147.92  E-value: 1.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1278174681  2 ETFLSSIFWILAPWNNMLLLKHGRIEILDQNTMYGWYELPKQELLNSEQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 .
gi 1278174681 82 Y 82
Cdd:pfam10705 81 Y 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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