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Conserved domains on  [gi|1276666239|gb|ATV27801|]
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30S ribosomal protein S7 [Prevotella intermedia]

Protein Classification

30S ribosomal protein S7( domain architecture ID 10792463)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Gene Symbol:  rpsG
Gene Ontology:  GO:0003735|GO:0015935|GO:0019843
PubMed:  11160889

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-158 2.59e-95

30S ribosomal protein S7; Validated


:

Pssm-ID: 235398  Cd Length: 156  Bit Score: 271.98  E-value: 2.59e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   1 MRKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSR 80
Cdd:PRK05302    2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT---GKDPLEVFEKALENVKPVVEVKSR 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1276666239  81 RIGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFRF 158
Cdd:PRK05302   79 RVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-158 2.59e-95

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 271.98  E-value: 2.59e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   1 MRKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSR 80
Cdd:PRK05302    2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT---GKDPLEVFEKALENVKPVVEVKSR 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1276666239  81 RIGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFRF 158
Cdd:PRK05302   79 RVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 2-158 3.29e-95

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 271.93  E-value: 3.29e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   2 RKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRR 81
Cdd:COG0049     3 RRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKT---GEDPLEVFEKALENVKPLVEVKSRR 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFRF 158
Cdd:COG0049    80 VGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 11-151 7.35e-76

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 222.32  E-value: 7.35e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  11 ILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNSdqeKSALEVWKQALDNITPQVEVKSRRIGGATFQVP 90
Cdd:cd14869     1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTG---KDPLEVFEKALENVKPLVEVRSRRVGGATYQVP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1276666239  91 TEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:cd14869    78 VEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 17-151 6.30e-72

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 212.24  E-value: 6.30e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  17 FNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKnsdQEKSALEVWKQALDNITPQVEVKSRRIGGATFQVPTEIRPD 96
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK---TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1276666239  97 RKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:pfam00177  78 RRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 2-157 1.98e-69

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 206.76  E-value: 1.98e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   2 RKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRR 81
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKT---GEDPLEVFEQALENVKPLVEVKSRR 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFR 157
Cdd:TIGR01029  78 VGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
 
Name Accession Description Interval E-value
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-158 2.59e-95

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 271.98  E-value: 2.59e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   1 MRKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSR 80
Cdd:PRK05302    2 PRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKT---GKDPLEVFEKALENVKPVVEVKSR 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1276666239  81 RIGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFRF 158
Cdd:PRK05302   79 RVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 2-158 3.29e-95

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 271.93  E-value: 3.29e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   2 RKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRR 81
Cdd:COG0049     3 RRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKT---GEDPLEVFEKALENVKPLVEVKSRR 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFRF 158
Cdd:COG0049    80 VGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 11-151 7.35e-76

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 222.32  E-value: 7.35e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  11 ILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNSdqeKSALEVWKQALDNITPQVEVKSRRIGGATFQVP 90
Cdd:cd14869     1 ILPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTG---KDPLEVFEKALENVKPLVEVRSRRVGGATYQVP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1276666239  91 TEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:cd14869    78 VEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 17-151 6.30e-72

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 212.24  E-value: 6.30e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  17 FNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKnsdQEKSALEVWKQALDNITPQVEVKSRRIGGATFQVPTEIRPD 96
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK---TGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1276666239  97 RKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:pfam00177  78 RRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 2-157 1.98e-69

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 206.76  E-value: 1.98e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   2 RKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRR 81
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKT---GEDPLEVFEQALENVKPLVEVKSRR 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFR 157
Cdd:TIGR01029  78 VGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 8-156 6.80e-62

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 187.10  E-value: 6.80e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   8 KRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRRIGGATF 87
Cdd:cd14871     1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKT---KQDPLEVLEQAIRNVTPLVEVKARRVGGSTY 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1276666239  88 QVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHF 156
Cdd:cd14871    78 QVPVEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
rps7 CHL00053
ribosomal protein S7
 2-157 7.24e-62

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 187.40  E-value: 7.24e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   2 RKAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRR 81
Cdd:CHL00053    3 RRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKT---EKNPLSVLRQAIRNVTPDVEVKARR 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFR 157
Cdd:CHL00053   80 VGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 17-157 6.24e-44

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 143.54  E-value: 6.24e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  17 FNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNE-------KNSDQEKSALE-----VWKQALDNITPQVEVKSRRIGG 84
Cdd:cd14870    46 FYDPLVSKFINMMMKKGNKELAREIVEKTLENIKRiqlekyhKATDEEKESIElnplvIFHKAVENCKPLLGLTSVKRGG 125

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1276666239  85 ATFQVPTEIRPDRKESVSMKNMIAFAR-KRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFR 157
Cdd:cd14870   126 KTYQVPVPITPNRARFLAMKWLIEACReKKRKIRFPEKLARELLDASNNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 24-157 6.55e-37

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 124.03  E-value: 6.55e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  24 KFVNHLMYDGKKNTSYEIFYAALDIVNEKNSDQEKSALEVWKQALDNITPQVEVKSRRIGGATFQVPTEIRPDRKESVSM 103
Cdd:cd15484     6 KFVNFLMKKGKKTKARTILFKTFHLLKQKQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQETLAI 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239 104 KNMIAFARKR------GGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANRAFAHFR 157
Cdd:cd15484    86 RWILEAAKKKqrkqskKRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYR 145
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 22-151 7.91e-32

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 110.42  E-value: 7.91e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  22 VSKFVNHLMYDGKKNTSYEIFYAALDIVNEKnsdQEKSALEVWKQALDNITPQVEVKSRRIGGATFQVPTEIRPDRKESV 101
Cdd:cd00323     4 LKKFINILMKDGKKSKAEKIFSKALKILKKK---TKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1276666239 102 SMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:cd00323    81 AIKWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 3-151 3.12e-19

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 78.77  E-value: 3.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239   3 KAKPKKRVILPDPKFNDQKVSKFVNHLMYDGKKNTSYEIFYAALDIVNEK-NSDqeksALEVWKQALDNITPQVEVKSRR 81
Cdd:cd14868     6 PAPPLPAQFLNIPPREDPLLEQLTNLIMKHGKKAKAQRIVSRALLHIHTLtRAD----PLPLLRQAIDSAAPLVKIKSQK 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  82 IGGATFQVPTEIRPDRKESVSMKNMIAFARKRGGKSMADKLAAEIMDAFNNQGGAFKRKEDMHRMAEANR 151
Cdd:cd14868    82 KGAKNVQVPVPLNERQRRRKAIKWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAVANR 151
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 16-151 5.71e-11

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 57.99  E-value: 5.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  16 KFNDQKVS---KFVNHLM----YDGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRRIGGATFQ 88
Cdd:PRK04027   51 QFGKAEVPiveRLINKLMrterNTGKKQKAYNIVKEAFEIIEKRT---KQNPIQVLVDAIENAAPREETTRIKYGGISYP 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1276666239  89 VPTEIRPDRKESVSMKNMIAFARK---RGGKSMADKLAAEIMDAFNN--QGGAFKRKEDMHRMAEANR 151
Cdd:PRK04027  128 KAVDVSPQRRVDLALRFIAEGARQasfKNKKSIEEALAEEIIAAANNdpKSYAVRKKEEIERVAKSAR 195
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 22-151 6.94e-11

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 57.56  E-value: 6.94e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  22 VSKFVNHLMY----DGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEVKSRRIGGATFQVPTEIRPDR 97
Cdd:cd14867    50 VERLINSLMMhgrnTGKKLMAYRIVKHAFEIIHLLT---GKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLR 126

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1276666239  98 KESVSMKNMIAFARK---RGGKSMADKLAAEIMDAFNNQGGAF--KRKEDMHRMAEANR 151
Cdd:cd14867   127 RVNQALRLIATGAREaafRNIKSIAECLADELINAAKGSSNSYaiKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 22-151 1.49e-07

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 48.61  E-value: 1.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1276666239  22 VSKFVNHLMY----DGKKNTSYEIFYAALDIVNEKNsdqEKSALEVWKQALDNITPQVEvkSRRIG--GATFQVPTEIRP 95
Cdd:PTZ00091   58 VERLVNSLMFhgrnNGKKLLAVRIVKHAFEIIHLLT---DKNPLQVLVDAVQNGGPRED--STRVGsgGVVRRQAVDVSP 132

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1276666239  96 DRKESVSMKNMIAFARK---RGGKSMADKLAAEIMDAFNNQGGAF--KRKEDMHRMAEANR 151
Cdd:PTZ00091  133 LRRVNQAIYLICKGAREaafRNIKTIAECLADEIINASKESSNSYaiKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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