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Conserved domains on  [gi|1242557164|gb|ATA77970|]
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hypothetical protein CGC47_10540 [Capnocytophaga canimorsus]

Protein Classification

LamG domain-containing protein( domain architecture ID 366259)

LamG (Laminin G) domain-containing protein may serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Laminin_G_3 super family cl48183
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
 21-121 6.48e-07

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


The actual alignment was detected with superfamily member pfam13385:

Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 46.99  E-value: 6.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242557164  21 NWYSRINPTD-----VNLADKVREFATDGLEIKTKRWYQVTYVKTKDHrVKIYLDGKHVRTFIMPNVKLKGDTTMSVF-- 93
Cdd:pfam13385  45 GYSLGLDGDGrlrfaVNGGNGGWDTVTSGASVPLGQWTHVAVTYDGGT-LRLYVNGVLVGSSTLTGGPPPGTGGPLYIgr 123

                          90       100
                  ....*....|....*....|....*...
gi 1242557164  94 NPQMSYSVSHILREVRVWSKALTEAQIN 121
Cdd:pfam13385 124 SPGGDDYFNGLIDEVRIYDRALSAAEIA 151
 
Name Accession Description Interval E-value
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
 21-121 6.48e-07

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 46.99  E-value: 6.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242557164  21 NWYSRINPTD-----VNLADKVREFATDGLEIKTKRWYQVTYVKTKDHrVKIYLDGKHVRTFIMPNVKLKGDTTMSVF-- 93
Cdd:pfam13385  45 GYSLGLDGDGrlrfaVNGGNGGWDTVTSGASVPLGQWTHVAVTYDGGT-LRLYVNGVLVGSSTLTGGPPPGTGGPLYIgr 123

                          90       100
                  ....*....|....*....|....*...
gi 1242557164  94 NPQMSYSVSHILREVRVWSKALTEAQIN 121
Cdd:pfam13385 124 SPGGDDYFNGLIDEVRIYDRALSAAEIA 151
 
Name Accession Description Interval E-value
Laminin_G_3 pfam13385
Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin ...
 21-121 6.48e-07

Concanavalin A-like lectin/glucanases superfamily; This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.


Pssm-ID: 463865 [Multi-domain]  Cd Length: 151  Bit Score: 46.99  E-value: 6.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242557164  21 NWYSRINPTD-----VNLADKVREFATDGLEIKTKRWYQVTYVKTKDHrVKIYLDGKHVRTFIMPNVKLKGDTTMSVF-- 93
Cdd:pfam13385  45 GYSLGLDGDGrlrfaVNGGNGGWDTVTSGASVPLGQWTHVAVTYDGGT-LRLYVNGVLVGSSTLTGGPPPGTGGPLYIgr 123

                          90       100
                  ....*....|....*....|....*...
gi 1242557164  94 NPQMSYSVSHILREVRVWSKALTEAQIN 121
Cdd:pfam13385 124 SPGGDDYFNGLIDEVRIYDRALSAAEIA 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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