|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-214 |
3.13e-56 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 178.72 E-value: 3.13e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIPD 78
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEvrrRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMNDFY---TCWNQKRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYglpRKEARERIDELLELFGLTdaADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 154 GIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARES 214
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKAR 221
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-218 |
6.09e-55 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 175.82 E-value: 6.09e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIP 77
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREarrQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISEAMEFMNDFYTCW---NQKRALELLGFFKLSKS--DKISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLFdeeLKKRIEELIELLGLEEFldRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 153 SGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKS 218
Cdd:COG4555 161 NGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-202 |
7.79e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 139.84 E-value: 7.79e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIPD 78
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEvkrRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEfmndfytcwnqkralellgffklsksdkissLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMF 158
Cdd:cd03230 81 EPSLYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1219749008 159 SREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:cd03230 130 SRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-222 |
1.74e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 142.94 E-value: 1.74e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDRRRIGYLPEER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TMLPNMRISEAMEFM--------NDfytcwNQKRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:COG4152 81 GLYPKMKVGEQLVYLarlkglskAE-----AKRRADEWLERLGLGdrANKKVEELSKGNQQKVQLIAALLHDPELLILDE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKSVVDV 222
Cdd:COG4152 156 PFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTLRL 227
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-203 |
6.28e-39 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 133.56 E-value: 6.28e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAIT 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 MLPNMRISEAMEFMNDFYTCWNQ---KRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGID 156
Cdd:cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEearRRIDEWLERLELSeyANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1219749008 157 MFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-202 |
5.08e-38 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 131.50 E-value: 5.08e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSfERITFIPDAITM 82
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKER-KRIGYVPQRRSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 LPNMRISeAMEF--MNDFYTCWNQKR-----------ALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:cd03235 80 DRDFPIS-VRDVvlMGLYGHKGLFRRlskadkakvdeALERVGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 150 EPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-200 |
1.00e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 123.89 E-value: 1.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFeritfipdaitm 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 lpnmriseamefmndfytcwnqKRALELLGFfklsksdkISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQ 162
Cdd:cd00267 69 ----------------------EELRRRIGY--------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRER 118
|
170 180 190
....*....|....*....|....*....|....*...
gi 1219749008 163 IANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd00267 119 LLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-203 |
4.96e-35 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 123.77 E-value: 4.96e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFG--RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT---EKSFERITFI 76
Cdd:cd03263 1 LQIRNLTKTYKkgTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRtdrKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEFMNDFYTCWNQKRALE---LLGFFKLSKS--DKISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEvelLLRVLGLTDKanKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 152 FSGIDMFSREQIANvFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03263 161 TSGLDPASRRAIWD-LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-183 |
1.76e-34 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 122.20 E-value: 1.76e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---FERITFIP 77
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARedyRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISEAMEFMNDFYTC-WNQKRALELLGFFKLSK-SDK-ISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:COG4133 82 HADGLKPELTVRENLRFWAALYGLrADREAIDEALEAVGLAGlADLpVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTA 161
|
170 180
....*....|....*....|....*....
gi 1219749008 155 IDMFSREQIANVFTSHLIEDRGVIITTHE 183
Cdd:COG4133 162 LDAAGVALLAELIAAHLARGGAVLLTTHQ 190
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-205 |
2.12e-33 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 119.61 E-value: 2.12e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGeITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIPD 78
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKlrrRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMndfytCW----NQK-------RALELLGFFKlSKSDKISSLSKGNTAKVNLLLGLAMDVDYIL 147
Cdd:cd03264 80 EFGVYPNFTVREFLDYI-----AWlkgiPSKevkarvdEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 148 MDEPFSGIDMFSREQIANVFTShLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:cd03264 154 VDEPTAGLDPEERIRFRNLLSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-211 |
7.75e-32 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 115.89 E-value: 7.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF----ERITFI 76
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLrelrRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 ---PDA-ITM----------LPNMRISEA-MEfmndfytcwnqKRALELLGFFKLSK-SDK-ISSLSKGNTAKVNLLLGL 139
Cdd:COG1122 81 fqnPDDqLFAptveedvafgPENLGLPREeIR-----------ERVEEALELVGLEHlADRpPHELSGGQKQRVAIAGVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA 211
Cdd:COG1122 150 AMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-215 |
7.82e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 116.00 E-value: 7.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERI-------T 74
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIarlgigrT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 F----IPDAITMLPNMRISEAMEFMNDFYTCWNQK-------RALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAM 141
Cdd:cd03219 81 FqiprLFPELTVLENVMVAAQARTGSGLLLARARReereareRAEELLERVGLADlaDRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 142 DVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-200 |
2.65e-31 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 113.05 E-value: 2.65e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERitfipdait 81
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 mlPNMRISEAMEFmndfytcwnQKRALellgFFKLSKSDKIS-SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSR 160
Cdd:cd03229 72 --PPLRRRIGMVF---------QDFAL----FPHLTVLENIAlGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1219749008 161 ----EQIANVFTSHLIEdrgVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03229 137 revrALLKSLQAQLGIT---VVLVTHDLDEAARLADRVVVLRDG 177
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-227 |
4.78e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 113.79 E-value: 4.78e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS-FER----ITFI 76
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPmHKRarlgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISE----AMEFMNDFYTCWnQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:cd03218 81 PQEASIFRKLTVEEnilaVLEIRGLSKKER-EEKLEELLEEFHITHlrKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 151 PFSGIDMFSREQIANVfTSHLiEDR--GVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEgksvvdVMREVY 227
Cdd:cd03218 160 PFAGVDPIAVQDIQKI-IKIL-KDRgiGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE------LVRKVY 230
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-200 |
2.30e-30 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 111.40 E-value: 2.30e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFGR--KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF----ERITFI 76
Cdd:cd03225 1 ELKNLSFSYPDgaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLkelrRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 ---PDA-ITM----------LPNMRISEAMEfmndfytcwnQKRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLA 140
Cdd:cd03225 81 fqnPDDqFFGptveeevafgLENLGLPEEEI----------EERVEEALELVGLEglRDRSPFTLSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 141 MDVDYILMDEPFSGIDMFSREQIANVFTsHLIED-RGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLK-KLKAEgKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-206 |
2.31e-30 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 111.54 E-value: 2.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT--EKSFERITFIPDA 79
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQknIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMrisEAMEFMNDFYTCW-----NQKRALELLGfFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03268 81 PGFYPNL---TARENLRLLARLLgirkkRIDEVLDVVG-LKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 155 IDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEF 206
Cdd:cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-203 |
4.67e-30 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 110.69 E-value: 4.67e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER--ITFIPDA 79
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERrnIGMVFQD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEamefmNDFYTCWNQK-----------RALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYILM 148
Cdd:cd03259 81 YALFPHLTVAE-----NIAFGLKLRGvpkaeirarvrELLELVGLEGLLNR-YPHELSGGQQQRVALARALAREPSLLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 149 DEPFSGIDMFSREQIANVFtSHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03259 155 DEPLSALDAKLREELREEL-KELQRELGitTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-205 |
6.03e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 108.22 E-value: 6.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKK----VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RI 73
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEarrRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIPDAITMLPNMRISEAMEFMNDFYTCW--NQKRALE----LLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYIL 147
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKgdELTARLEeladRLGMEELLDR-RVGGFSTGMRQKVAIARALVHDPPVLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 148 MDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-215 |
1.25e-28 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 107.76 E-value: 1.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIP--- 77
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELRrri 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 ----------DAIT-----MLP---NMRISEAMEfmndfytcwnQKRALELLGFFKLSKS-DK-ISSLSKGNTAKVNLLL 137
Cdd:COG1127 85 gmlfqggalfDSLTvfenvAFPlreHTDLSEAEI----------RELVLEKLELVGLPGAaDKmPSELSGGMRKRVALAR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 138 GLAMDVDYILMDEPFSGIDMFSREQIANvftshLI----EDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA 211
Cdd:COG1127 155 ALALDPEILLYDEPTAGLDPITSAVIDE-----LIrelrDELGltSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
....
gi 1219749008 212 RESE 215
Cdd:COG1127 230 LASD 233
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-203 |
1.40e-28 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 107.21 E-value: 1.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRK----KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS------- 69
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlrkir 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 FERITFIP-DAITML-PNMRI----SEAMEFMNDFYTCWNQKRALELLgFFKLSKSDKISS-----LSKGNTAKVNLLLG 138
Cdd:cd03257 81 RKEIQMVFqDPMSSLnPRMTIgeqiAEPLRIHGKLSKKEARKEAVLLL-LVGVGLPEEVLNrypheLSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLK-KLQEELGltLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-227 |
2.46e-28 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 107.04 E-value: 2.46e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS-FER----ITF 75
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPmHKRarlgIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IP-DA-----ITMLPNMRIseAMEFMNDFYTCWNQkRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYIL 147
Cdd:COG1137 83 LPqEAsifrkLTVEDNILA--VLELRKLSKKEREE-RLEELLEEFGIThlRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 148 MDEPFSGIDMFSREQIANVFtSHLiEDR--GVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEgksvvDVmRE 225
Cdd:COG1137 160 LDEPFAGVDPIAVADIQKII-RHL-KERgiGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNP-----LV-RK 231
|
..
gi 1219749008 226 VY 227
Cdd:COG1137 232 VY 233
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-200 |
1.54e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 105.08 E-value: 1.54e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE----RITFI 76
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVelrrKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEFMNDFYTcWN----QKRALELLGFFKL---SKSDKISS-LSKGNTAKVNLLLGLAMDVDYILM 148
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLK-WPkekiRERADELLALVGLdpaEFADRYPHeLSGGQQQRVGVARALAADPPLLLM 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 149 DEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03295 160 DEPFGALDPITRDQLQEEFK-RLQQELGktIVFVTHDIDEAFRLADRIAIMKNG 212
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-210 |
1.77e-27 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 104.37 E-value: 1.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIPD 78
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREvrrRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMNDFYTCWNQK---RALELLGFFKL-SKSDKI-SSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAErreRIDELLDFVGLlEAADRLvKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 154 GIDMFSREQIANVFtSHLIEDRGVII--TTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:cd03265 161 GLDPQTRAHVWEYI-EKLKEEFGMTIllTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-215 |
2.70e-27 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 104.12 E-value: 2.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAIT 81
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 ML-------PNMRISEAMEF-MNDFYTC---WNQKRALELLGFFKLSKSDKI--SSLSKGNTAKVNLLLGLAMDVDYILM 148
Cdd:cd03261 81 MLfqsgalfDSLTVFENVAFpLREHTRLseeEIREIVLEKLEAVGLRGAEDLypAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 149 DEPFSGIDMFSREQIANvftshLI------EDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:cd03261 161 DEPTAGLDPIASGVIDD-----LIrslkkeLGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-206 |
3.54e-27 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 103.32 E-value: 3.54e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSfERITFIP 77
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-PDRGYVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSKSDK--ISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:cd03293 80 QQDALLPWLTVLDNVALgleLQGVPKAEARERAEELLELVGLSGFENayPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 153 SGIDMFSREQIANVFTSHLIEDR-GVIITTHeinDIE---HLIDKVVLIDE--GVVIKEF 206
Cdd:cd03293 160 SALDALTREQLQEELLDIWRETGkTVLLVTH---DIDeavFLADRVVVLSArpGRIVAEV 216
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-210 |
4.58e-27 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 108.07 E-value: 4.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF-----GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---- 71
Cdd:COG1123 260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRslre 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 ---RITFIP-DAITML-PNMRISEAMEFMNDFYTCWN----QKRALELLGFFKLSKSDK---ISSLSKGNTAKVNLLLGL 139
Cdd:COG1123 340 lrrRVQMVFqDPYSSLnPRMTVGDIIAEPLRLHGLLSraerRERVAELLERVGLPPDLAdryPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLR-DLQRELGltYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-222 |
5.47e-27 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 104.89 E-value: 5.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE---RITFIPD 78
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHarqRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAME-FMNDFYTCWNQKRAL--ELLGFFKL-SKSD-KISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK13537 88 FDNLDPDFTVRENLLvFGRYFGLSAAAARALvpPLLEFAKLeNKADaKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 154 GIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE-GKSVVDV 222
Cdd:PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEiGCDVIEI 237
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-210 |
1.11e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 106.91 E-value: 1.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN---KGQILLNGEAITEKSFE---- 71
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEAlrgr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 RITFIP-DAITMLPNMRISEAMEFmndfyTCWNQ--------KRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLA 140
Cdd:COG1123 84 RIGMVFqDPMTQLNPVTVGDQIAE-----ALENLglsraearARVLELLEAVGLERrlDRYPHQLSGGQRQRVAIAMALA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 141 MDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:COG1123 159 LDPDLLIADEPTTALDVTTQAEILDLLR-ELQRERGttVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-202 |
1.38e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 99.14 E-value: 1.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS------------ 69
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKkninelrqkvgm 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 -------FERITfIPDAITMLP----NMRISEAmefmndfytcwnQKRALELLGFFKLS-KSDK-ISSLSKGNTAKVNLL 136
Cdd:cd03262 81 vfqqfnlFPHLT-VLENITLAPikvkGMSKAEA------------EERALELLEKVGLAdKADAyPAQLSGGQQQRVAIA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 137 LGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-227 |
1.65e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 100.11 E-value: 1.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERI------- 73
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIarlgiar 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TF--------------------------IPDAITMLPNMRISEAmefmndfytcWNQKRALELLGFFKLS-KSDKI-SSL 125
Cdd:COG0411 84 TFqnprlfpeltvlenvlvaaharlgrgLLAALLRLPRARREER----------EARERAEELLERVGLAdRADEPaGNL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 126 SKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIAnvftsHLI----EDRG--VIIttheindIEH-------LID 192
Cdd:COG0411 154 SYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELA-----ELIrrlrDERGitILL-------IEHdmdlvmgLAD 221
|
250 260 270
....*....|....*....|....*....|....*
gi 1219749008 193 KVVLIDEGVVIKEFNAEEARESEgksvvDVmREVY 227
Cdd:COG0411 222 RIVVLDFGRVIAEGTPAEVRADP-----RV-IEAY 250
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-202 |
1.68e-25 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 99.10 E-value: 1.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF------- 70
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEkelaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 71 -ERITFIPDAITMLPNMRISE----AMEFMNDFYTCWNQkRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDV 143
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALEnvelPLLLAGVPKKERRE-RAEELLERVGLGdrLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 144 DYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEiNDIEHLIDKVVLIDEGVV 202
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRE-LNKEAGttIVVVTHD-PELAEYADRIIELRDGKI 218
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-207 |
4.15e-24 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 96.31 E-value: 4.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF----GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSfERITFI 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPG-PDRGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:COG1116 86 FQEPALLPWLTVLDNVALgleLRGVPKAERRERARELLELVGLAGfeDAYPHQLSGGMRQRVAIARALANDPEVLLMDEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 152 FSGIDMFSREQIANVFTShLIEDRG--VIITTHeinDIE---HLIDKVVLIDE--GVVIKEFN 207
Cdd:COG1116 166 FGALDALTRERLQDELLR-LWQETGktVLFVTH---DVDeavFLADRVVVLSArpGRIVEEID 224
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-203 |
1.03e-23 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 96.31 E-value: 1.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE----RITF 75
Cdd:COG1125 1 MIEFENVTKRYpDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPVelrrRIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLPNMRISEamefmndfytcwN---------------QKRALELLGFFKLSKSD----KISSLSKGNTAKVNLL 136
Cdd:COG1125 81 VIQQIGLFPHMTVAE------------NiatvprllgwdkeriRARVDELLELVGLDPEEyrdrYPHELSGGQQQRVGVA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 137 LGLAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:COG1125 149 RALAADPPILLMDEPFGALDPITREQLQDELL-RLQRELGktIVFVTHDIDEALKLGDRIAVMREGRIV 216
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-210 |
4.94e-23 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 93.13 E-value: 4.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDaI 80
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLRRK-V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TML-------PNMRI----------------SEAMEfmndfytcwnqkRALELLGFFKLSksDKI----SSLSKGNTAKV 133
Cdd:COG1126 80 GMVfqqfnlfPHLTVlenvtlapikvkkmskAEAEE------------RAMELLERVGLA--DKAdaypAQLSGGQQQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 134 NLLLGLAMDVDYILMDEPFSGID----------MfsrEQIANvftshliEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:COG1126 146 AIARALAMEPKVMLFDEPTSALDpelvgevldvM---RDLAK-------EGMTMVVVTHEMGFAREVADRVVFMDGGRIV 215
|
....*..
gi 1219749008 204 KEFNAEE 210
Cdd:COG1126 216 EEGPPEE 222
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-213 |
6.22e-23 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 92.50 E-value: 6.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEK-SFER----ITFI 76
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLpPHERaragIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISE----AMEFMNDFYTCWNQKRALELlgFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:cd03224 81 PEGRRIFPELTVEEnlllGAYARRRAKRKARLERVYEL--FPRLKerRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 151 PFSGIDMFSREQIANVFTShlIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARE 213
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRE--LRDEGvtILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-220 |
1.73e-22 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 91.63 E-value: 1.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER--ITFIPDA 79
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQErnVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEF---MNDFYTCWN----QKRALELLGFFKLSK-SDKI-SSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:cd03296 83 YALFRHMTVFDNVAFglrVKPRSERPPeaeiRAKVHELLKLVQLDWlADRYpAQLSGGQRQRVALARALAVEPKVLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 151 PFSGIDMFSREQIANvFTSHLIEDRGV--IITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKSVV 220
Cdd:cd03296 163 PFGALDAKVRKELRR-WLRRLHDELHVttVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-218 |
2.53e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 90.28 E-value: 2.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMAL--TPINKGQILLNGEAITEKS-FER------ 72
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPpEERarlgif 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 ITF-IPDAItmlPNMRISEAMEFMNDfytcwnqkralellGFfklsksdkisslSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:cd03217 81 LAFqYPPEI---PGVKNADFLRYVNE--------------GF------------SGGEKKRNEILQLLLLEPDLAILDEP 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 152 FSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLI-DKVVLIDEGVVIKEFNAEEARESEGKS 218
Cdd:cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKpDRVHVLYDGRIVKSGDKELALEIEKKG 199
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-205 |
3.03e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 92.97 E-value: 3.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEK---SFERITFIPD 78
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARarlARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMNDFYTCwnQKRALE-----LLGFFKL-SKSD-KISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:PRK13536 122 FDNLDLEFTVRENLLVFGRYFGM--STREIEavipsLLEFARLeSKADaRVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 152 FSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-203 |
4.44e-22 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 89.53 E-value: 4.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKK------FGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALT--PINKGQILLNGEAITEKSFERI 73
Cdd:cd03213 4 LSFRNLTVTvksspsKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRtgLGVSGEVLINGRPLDKRSFRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 T-FIPDAITMLPNMRISEAMEFmndfytcwnqkralellgffklskSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:cd03213 84 IgYVPQDDILHPTLTVRETLMF------------------------AAKLRGLSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 153 SGIDMFSREQIANVFtSHLIED-RGVIITTHEI-NDIEHLIDKVVLIDEGVVI 203
Cdd:cd03213 140 SGLDSSSALQVMSLL-RRLADTgRTIICSIHQPsSEIFELFDKLLLLSQGRVI 191
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-228 |
1.18e-21 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 89.76 E-value: 1.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE-KSFE---RITFI 76
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATtPSRElakRLAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMlpNMR--------------------------ISEAMEFMNdfytcwnqkraLELLgffklskSDK-ISSLSKGN 129
Cdd:COG4604 81 RQENHI--NSRltvrelvafgrfpyskgrltaedreiIDEAIAYLD-----------LEDL-------ADRyLDELSGGQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 130 TAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFN 207
Cdd:COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLR-RLADELGktVVIVLHDINFASCYADHIVAMKDGRVVAQGT 219
|
250 260
....*....|....*....|.
gi 1219749008 208 AEEARESEgksvvdVMREVYQ 228
Cdd:COG4604 220 PEEIITPE------VLSDIYD 234
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-203 |
2.36e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 88.54 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGR---------------------KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILL 60
Cdd:cd03267 1 IEVSNLSKSYRVyskepgligslkslfkrkyreVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 61 NGEAITEKSFE---RITFIPDAITMLP-NMRISEAMEFMNDFYTC------WNQKRALELLGFFKLSKSdKISSLSKGNT 130
Cdd:cd03267 81 AGLVPWKRRKKflrRIGVVFGQKTQLWwDLPVIDSFYLLAAIYDLpparfkKRLDELSELLDLEELLDT-PVRQLSLGQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 131 AKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANvFTSHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03267 160 MRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN-FLKEYNRERGttVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
8-203 |
5.76e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 87.33 E-value: 5.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 8 TKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMAL---TPINKGQILLNGEAITEKSF-ERITFIPDAITML 83
Cdd:cd03234 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRvegGGTTSGQILFNGQPRKPDQFqKCVAYVRQDDILL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 84 PNMRISEAMEFMNDFYT--CWNQKRALELLGFFKLSK-------SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03234 94 PGLTVRETLTYTAILRLprKSSDAIRKKRVEDVLLRDlaltrigGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1219749008 155 IDMFSREQIANVFTSHLIEDRGVIITTHEI-NDIEHLIDKVVLIDEGVVI 203
Cdd:cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPrSDLFRLFDRILLLSSGEIV 223
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-182 |
6.66e-21 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 86.47 E-value: 6.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS-FERITFIPDA 79
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDvAEACHYLGHR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEFMNDFYtcwNQK--RALELLGFFKLSKSDKI--SSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGI 155
Cdd:PRK13539 82 NAMKPALTVAENLEFWAAFL---GGEelDIAAALEAVGLAPLAHLpfGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
170 180
....*....|....*....|....*....
gi 1219749008 156 DMFSREQIANVFTSHLieDRG--VIITTH 182
Cdd:PRK13539 159 DAAAVALFAELIRAHL--AQGgiVIAATH 185
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-163 |
7.86e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 87.61 E-value: 7.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-ITF 75
Cdd:COG4525 3 MLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADRgVVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAitMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:COG4525 83 QKDA--LLPWLNVLDNVAFglrLRGVPKAERRARAEELLALVGLADfaRRRIWQLSGGMRQRVGIARALAADPRFLLMDE 160
|
170
....*....|...
gi 1219749008 151 PFSGIDMFSREQI 163
Cdd:COG4525 161 PFGALDALTREQM 173
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-210 |
3.54e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 88.15 E-value: 3.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-----ITF 75
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDaqaagIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLPNMRISEAMeFMNDFYTC-----WNQ--KRALELLGFFKLSKS--DKISSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:COG1129 84 IHQELNLVPNLSVAENI-FLGREPRRgglidWRAmrRRARELLARLGLDIDpdTPVGDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 147 LMDEPFSgidMFSREQIANVFTshLIED-----RGVIITTHEINDIEHLIDKV-VLIDeGVVIKEFNAEE 210
Cdd:COG1129 163 ILDEPTA---SLTEREVERLFR--IIRRlkaqgVAIIYISHRLDEVFEIADRVtVLRD-GRLVGTGPVAE 226
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-205 |
3.64e-20 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 83.63 E-value: 3.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAItekSFeritfipdait 81
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV---SF----------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 mlpnmriseamefmndfytcWNQKRALEL-LGFfklsksdkISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSgidMFSR 160
Cdd:cd03216 67 --------------------ASPRDARRAgIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTA---ALTP 115
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1219749008 161 EQIANVFtsHLIED-----RGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:cd03216 116 AEVERLF--KVIRRlraqgVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-215 |
8.11e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 84.56 E-value: 8.11e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 5 KDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT-----EKSFERITFIPDA 79
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllplhARARRGIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISE----AMEFMNDFYTCWNQKRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK10895 87 ASIFRRLSVYDnlmaVLQIRDDLSAEQREDRANELMEEFHIEhlRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 154 GIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:PRK10895 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-210 |
1.00e-19 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 84.31 E-value: 1.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKvLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER--ITFIPDA 79
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKrdISYVPQN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03299 80 YALFPHMTVYKNIAYglkKRKVDKKEIERKVLEIAEMLGIDHllNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 155 IDMFSREQIAN-VFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:cd03299 160 LDVRTKEKLREeLKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-210 |
1.52e-19 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 83.99 E-value: 1.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS----------- 69
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKvderlirqeag 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 --FERITFIPDaITMLPN----------MRISEAmefmndfytcwnQKRALELLGffKLSKSDKI----SSLSKGNTAKV 133
Cdd:PRK09493 81 mvFQQFYLFPH-LTALENvmfgplrvrgASKEEA------------EKQARELLA--KVGLAERAhhypSELSGGQQQRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 134 NLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-200 |
1.99e-19 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 83.98 E-value: 1.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-ITFIPDA 79
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERgVVFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 itMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSKSDK--ISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:PRK11248 81 --LLPWRNVQDNVAFglqLAGVEKMQRLEIAHQMLKKVGLEGAEKryIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1219749008 155 IDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK11248 159 LDAFTREQMQTLLLK-LWQETGkqVLLITHDIEEAVFMATELVLLSPG 205
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-188 |
4.29e-19 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 81.76 E-value: 4.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIM-ALTPI--NKGQILLNGEAITEKSFER----I 73
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAgTLSPAfsASGEVLLNGRRLTALPAEQrrigI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFiPDAItMLPNMRISEAMEF-----MNDfytcwNQKR-----ALELLGFFKLSKSDkISSLSKGNTAKVNLLLGLAMDV 143
Cdd:COG4136 81 LF-QDDL-LFPHLSVGENLAFalpptIGR-----AQRRarveqALEEAGLAGFADRD-PATLSGGQRARVALLRALLAEP 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1219749008 144 DYILMDEPFSGIDMFSREQI-ANVFTshLIEDRG--VIITTHEINDIE 188
Cdd:COG4136 153 RALLLDEPFSKLDAALRAQFrEFVFE--QIRQRGipALLVTHDEEDAP 198
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-213 |
5.20e-19 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 82.23 E-value: 5.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TML---PNM--RISeAME--------FMNDFYTCWNQ------KRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGL 139
Cdd:cd03256 81 GMIfqqFNLieRLS-VLEnvlsgrlgRRSTWRSLFGLfpkeekQRALAALERVGLLDkaYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI-----KEFNAEEAR 212
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKR-INREEGitVIVSLHQVDLAREYADRIVGLKDGRIVfdgppAELTDEVLD 238
|
.
gi 1219749008 213 E 213
Cdd:cd03256 239 E 239
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-153 |
6.37e-19 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 80.00 E-value: 6.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE----RITFIPDAITMLPNMRISEAM 92
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKslrkEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 93 EFMNDFY-----TCWNQ-KRALELLGFFKLSK---SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:pfam00005 81 RLGLLLKglskrEKDARaEEALEKLGLGDLADrpvGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-203 |
2.12e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 80.30 E-value: 2.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTIL---NAIMALTPINK--GQILLNGEAITEKSFERITfI 76
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLrllNRLNDLIPGAPdeGEVLLDGKDIYDLDVDVLE-L 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITML---PN---MRISEAMEFMNDFYTCWNQKR-------ALELLGFFKLSKSD-KISSLSKGNTAKVNLLLGLAMD 142
Cdd:cd03260 80 RRRVGMVfqkPNpfpGSIYDNVAYGLRLHGIKLKEElderveeALRKAALWDEVKDRlHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTShLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-210 |
4.03e-18 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 79.93 E-value: 4.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS-FEritf 75
Cdd:cd03258 1 MIELKNVSKVFGdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgKE---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 ipdaitmLPNMRISEAMEFMNdFYTCWN---------------------QKRALELLGFFKLS-KSDK-ISSLSKGNTAK 132
Cdd:cd03258 77 -------LRKARRRIGMIFQH-FNLLSSrtvfenvalpleiagvpkaeiEERVLELLELVGLEdKADAyPAQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 133 VNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRD-INRELGltIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-202 |
6.29e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 78.84 E-value: 6.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE-KSFER-ITFIPDA 79
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDlPPKDRdIAMVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03301 81 YALYPHMTVYDNIAFglkLRKVPKDEIDERVREVAELLQIEHllDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1219749008 155 IDMFSREQI-ANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:cd03301 161 LDAKLRVQMrAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1-204 |
6.70e-18 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 78.88 E-value: 6.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVkDITKKFGRKKVlrGVSFTAEkGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI--TEKSF------ER 72
Cdd:cd03297 1 MLCV-DIEKRLPDFTL--KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLfdSRKKInlppqqRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 ITFIPDAITMLPNMRISEAMEFMNDFYTCWNQK-RALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRiSVDELLDLLGLDHllNRYPAQLSGGEKQRVALARALAAQPELLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 150 EPFSGIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:cd03297 157 EPFSALDRALRLQLLPELKQiKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-215 |
1.18e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 80.83 E-value: 1.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITkkfgRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSferitfIPDAI-- 80
Cdd:COG1129 258 EVEGLS----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRS------PRDAIra 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 -----------------------TMLPNMR-------ISEAMEfmndfytcwnQKRALELLGFFKL---SKSDKISSLSK 127
Cdd:COG1129 328 giayvpedrkgeglvldlsirenITLASLDrlsrgglLDRRRE----------RALAEEYIKRLRIktpSPEQPVGNLSG 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 128 GNTAKVnlLLG--LAMDVDYILMDEPFSGIDMFSREQIanvftSHLIED-----RGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:COG1129 398 GNQQKV--VLAkwLATDPKVLILDEPTRGIDVGAKAEI-----YRLIRElaaegKAVIVISSELPELLGLSDRILVMREG 470
|
250
....*....|....*
gi 1219749008 201 VVIKEFNAEEARESE 215
Cdd:COG1129 471 RIVGELDREEATEEA 485
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-215 |
1.32e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.98 E-value: 1.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKfGRKKVlRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS--------FERIT 74
Cdd:PRK09700 267 EVRNVTSR-DRKKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSpldavkkgMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 -------FIPDaITMLPNMRISEAMEF------MNDFYTCWNQKRA---LELLGFFKLSKSDKISSLSKGNTAKVNLLLG 138
Cdd:PRK09700 345 esrrdngFFPN-FSIAQNMAISRSLKDggykgaMGLFHEVDEQRTAenqRELLALKCHSVNQNITELSGGNQQKVLISKW 423
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEF-NAEEARESE 215
Cdd:PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILtNRDDMSEEE 501
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-200 |
4.74e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 75.93 E-value: 4.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITkkfgRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-----ITFIP 77
Cdd:cd03215 6 EVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDairagIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 D---AITMLPNMRISEAMefmndfytcwnqkraleLLGFFklsksdkissLSKGNTAKVnlLLG--LAMDVDYILMDEPF 152
Cdd:cd03215 82 EdrkREGLVLDLSVAENI-----------------ALSSL----------LSGGNQQKV--VLArwLARDPRVLILDEPT 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1219749008 153 SGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-203 |
5.66e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.95 E-value: 5.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLnGEAIteksfeRITFIP-DA 79
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV------KIGYFDqHQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRIseaMEFMNDFYTCWNQKRALELLGFFKLSKSD---KISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGID 156
Cdd:COG0488 388 EELDPDKTV---LDELRDGAPGGTEQEVRGYLGRFLFSGDDafkPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLD 464
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 157 MFSREQIAN---------VFTSHlieDRgviittheindieHLIDKVV----LIDEGVVI 203
Cdd:COG0488 465 IETLEALEEalddfpgtvLLVSH---DR-------------YFLDRVAtrilEFEDGGVR 508
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-202 |
9.46e-17 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 77.96 E-value: 9.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF----ERITFI 76
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAraasRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEF-----MNDFYTcWNQ------KRALELLGFFKLSKSDkISSLSKGNTAKVNLLLGLAMDVDY 145
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMgrtphRSRFDT-WTEtdraavERAMERTGVAQFADRP-VTSLSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 146 ILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRV 217
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-200 |
1.05e-16 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 75.37 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFGRK-KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFI----P 77
Cdd:cd03226 1 RIENISFSYKKGtEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYvmqdV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAI----TMLPNMRISeamefMNDFYTCWNQKRA-LELLGFFKLsKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:cd03226 81 DYQlftdSVREELLLG-----LKELDAGNEQAETvLKDLDLYAL-KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1219749008 153 SGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-203 |
1.21e-16 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 76.28 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQ---IL---LNGEAITE-KSfeRI 73
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdvrLFgerRGGEDVWElRK--RI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIpdaitmlpnmriseAMEFMNDFY---TCWN--------------------QKRALELLGFFKLS-KSDK-ISSLSKG 128
Cdd:COG1119 81 GLV--------------SPALQLRFPrdeTVLDvvlsgffdsiglyreptdeqRERARELLELLGLAhLADRpFGTLSQG 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 129 NTAKVnlLLGLAM--DVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:COG1119 147 EQRRV--LIARALvkDPELLILDEPTAGLDLGARELLLALL-DKLAAEGAptLVLVTHHVEEIPPGITHVLLLKDGRVV 222
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-182 |
1.32e-16 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 75.09 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER---ITFIPD 78
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPhenILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMNDFY-----TCWNQKRALELLGFFKLSksdkISSLSKGNTAKVNLL-LGLAMDVDYILmDEPF 152
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHggaqrTIEDALAAVGLTGFEDLP----AAQLSAGQQRRLALArLWLSRRPLWIL-DEPT 155
|
170 180 190
....*....|....*....|....*....|
gi 1219749008 153 SGIDMFSREQIANVFTSHLIEDRGVIITTH 182
Cdd:TIGR01189 156 TALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-195 |
1.53e-16 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 76.63 E-value: 1.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF----GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN---KGQILLNGEAITEKSFE-- 71
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPgitSGEILFDGEDLLKLSEKel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 ------RITFIP-DAITML-PNMRI----SEAMEFMNDfytcWN----QKRALELLGFFKLSKSDKISS-----LSKGNT 130
Cdd:COG0444 81 rkirgrEIQMIFqDPMTSLnPVMTVgdqiAEPLRIHGG----LSkaeaRERAIELLERVGLPDPERRLDrypheLSGGMR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 131 AKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVV 195
Cdd:COG0444 157 QRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKD-LQRELGlaILFITHDLGVVAEIADRVA 222
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-210 |
1.78e-16 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 75.56 E-value: 1.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMAL-TP----INKGQILLNG-------EAITEK 68
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLeQPeagtIRVGDITIDTarslsqqKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 69 SFERITFIPDAITMLPNM----RISEAMEFMNDFYTCWNQKRALELLGFFKLS-KSDKI-SSLSKGNTAKVNLLLGLAMD 142
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRtvleNIIEGPVIVKGEPKEEATARARELLAKVGLAgKETSYpRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-226 |
2.40e-16 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 76.66 E-value: 2.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS------------ 69
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHardrkvgfvfqh 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 ---------FERITFipdAITMLPNMRISEAMEFmndfytcwnQKRALELLGFFKLSK-SDKI-SSLSKGNTAKVNLLLG 138
Cdd:PRK10851 83 yalfrhmtvFDNIAF---GLTVLPRRERPNAAAI---------KAKVTQLLEMVQLAHlADRYpAQLSGGQKQRVALARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIAN---------VFTShliedrgvIITTHEINDIEHLIDKVVLIDEGVVIKEFNAE 209
Cdd:PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRwlrqlheelKFTS--------VFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
250
....*....|....*...
gi 1219749008 210 EA-RESEGKSVVDVMREV 226
Cdd:PRK10851 223 QVwREPATRFVLEFMGEV 240
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
5-210 |
2.62e-16 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 75.37 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 5 KDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFI-PDAITM- 82
Cdd:cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELrRKKISMv 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 ------LPNMRISEAMEFMNDFYTCWNQKR------ALELLGFfKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:cd03294 108 fqsfalLPHRTVLENVAFGLEVQGVPRAEReeraaeALELVGL-EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 151 PFSGIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:cd03294 187 AFSALDPLIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEE 247
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-203 |
2.86e-16 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 74.70 E-value: 2.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDA 79
Cdd:COG2884 1 MIRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITM-------LPNMRISE----AMEFM---NDFYtcwnQKRALELLGFFKLS-KSDKI-SSLSKGNTAKVNLLLGLAMDV 143
Cdd:COG2884 81 IGVvfqdfrlLPDRTVYEnvalPLRVTgksRKEI----RRRVREVLDLVGLSdKAKALpHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 144 DYILMDEPFSGIDMFSREQIANVFTShlIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEE--INRRGttVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-163 |
5.42e-16 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 74.20 E-value: 5.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE-KSFER-ITFIPDA 79
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNlPPHKRpVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLS--KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03300 81 YALFPHLTVFENIAFglrLKKLPKAEIKERVAEALDLVQLEgyANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
....*....
gi 1219749008 155 IDMFSREQI 163
Cdd:cd03300 161 LDLKLRKDM 169
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-200 |
6.47e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 76.21 E-value: 6.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 4 VKDITKKF---GRKKVLRgVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAItEKSFERIT----FI 76
Cdd:TIGR01257 931 VKNLVKIFepsGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRqslgMC 1008
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEFMNDFYTCWNQKRALELLGFFKLS-----KSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:TIGR01257 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTglhhkRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1219749008 152 FSGIDMFSREQIANVFTSHLiEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:TIGR01257 1089 TSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQG 1136
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-210 |
7.61e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 74.24 E-value: 7.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT---EKSFERITFIPD 78
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrDKDGQLKVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLpnmRISEAMEFMNdfYTCWNQKRALE--------LLGffkLSKS----------DKI-----------SSLSKGN 129
Cdd:PRK10619 86 QLRLL---RTRLTMVFQH--FNLWSHMTVLEnvmeapiqVLG---LSKQeareravkylAKVgideraqgkypVHLSGGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 130 TAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAE 209
Cdd:PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
|
.
gi 1219749008 210 E 210
Cdd:PRK10619 238 Q 238
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-211 |
1.21e-15 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 73.19 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF----------------------GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQI 58
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 59 LLNGeaiteksfeRIT--------FIPD-----------AITMLPNMRISEAMEFMNDFytcwnqkrAlELLGFFKLsks 119
Cdd:COG1134 84 EVNG---------RVSallelgagFHPEltgreniylngRLLGLSRKEIDEKFDEIVEF--------A-ELGDFIDQ--- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 120 dKISSLSKGNTAKvnLLLGLAMDV--DYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLI 197
Cdd:COG1134 143 -PVKTYSSGMRAR--LAFAVATAVdpDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWL 219
|
250
....*....|....
gi 1219749008 198 DEGVVIKEFNAEEA 211
Cdd:COG1134 220 EKGRLVMDGDPEEV 233
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-200 |
2.10e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 71.73 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDIT-----KKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGeaiteksfeRITFI 76
Cdd:cd03250 1 ISVEDASftwdsGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------SIAYV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAiTMLPNMRISE----AMEFMNDFYtcwnqKRALELLGFFK----LSKSD------KISSLSKGNTAKVNLLLGLAMD 142
Cdd:cd03250 72 SQE-PWIQNGTIREnilfGKPFDEERY-----EKVIKACALEPdleiLPDGDlteigeKGINLSGGQKQRISLARAVYSD 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIA-NVFTSHLIEDRGVIITTHEINDIEHLiDKVVLIDEG 200
Cdd:cd03250 146 ADIYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQLQLLPHA-DQIVVLDNG 203
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-182 |
2.69e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 71.76 E-value: 2.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---FERITFIPD 78
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRdsiARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEFMNDFY---TCWNQKRALELLGFFKLSksdkISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGI 155
Cdd:cd03231 81 APGIKTTLSVLENLRFWHADHsdeQVEEALARVGLNGFEDRP----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
170 180
....*....|....*....|....*..
gi 1219749008 156 DMFSREQIANVFTSHLIEDRGVIITTH 182
Cdd:cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
8-203 |
7.16e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 73.16 E-value: 7.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 8 TKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN---KGQILLNGEAITEKSFERIT-FIPDAITML 83
Cdd:TIGR00955 32 CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKEMRAISaYVQQDDLFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 84 PNMRISEAMEFMNDF----YTCWNQKRA-----LELLGFFKLSKS-----DKISSLSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:TIGR00955 112 PTLTVREHLMFQAHLrmprRVTKKEKRErvdevLQALGLRKCANTrigvpGRVKGLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 150 EPFSGIDMFSREQIANVFTSHLIEDRGVIITTHE-INDIEHLIDKVVLIDEGVVI 203
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVA 246
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
20-214 |
1.85e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 71.48 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 20 VSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSferitfIPDAIT---ML-P----------- 84
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS------PRDAIRagiMLcPedrkaegiipv 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 85 -----NMRIS------EAMEFMNDFYTCWNQKRALELLGFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK11288 346 hsvadNINISarrhhlRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 154 GIDMFSREQIANVFtsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARES 214
Cdd:PRK11288 426 GIDVGAKHEIYNVI--YELAAQGvaVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATER 486
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-217 |
1.86e-14 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 71.79 E-value: 1.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGR--KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE---KSF-ERITF 75
Cdd:COG2274 474 IELENVSFRYPGdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQidpASLrRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IP-----------DAITM-LPNMRISEAMEfmndfytcwnqkrALELLGFfklskSDKISSLSKGntakVNLLLG----- 138
Cdd:COG2274 554 VLqdvflfsgtirENITLgDPDATDEEIIE-------------AARLAGL-----HDFIEALPMG----YDTVVGeggsn 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 139 --------------LAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRGVIITTHEINDIEHLiDKVVLIDEGVVIK 204
Cdd:COG2274 612 lsggqrqrlaiaraLLRNPRILILDEATSALDAETEAIILENL-RRLLKGRTVIIIAHRLSTIRLA-DRIIVLDKGRIVE 689
|
250
....*....|...
gi 1219749008 205 EFNAEEARESEGK 217
Cdd:COG2274 690 DGTHEELLARKGL 702
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-216 |
2.32e-14 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 69.56 E-value: 2.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKK-VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNG---EAITEKSF-ERITFI 76
Cdd:cd03254 3 IEFENVNFSYDEKKpVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGidiRDISRKSLrSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMrISEAMEFMNDFYTCWNQKRALELLGF----FKLSK------SDKISSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:cd03254 83 LQDTFLFSGT-IMENIRLGRPNATDEEVIEAAKEAGAhdfiMKLPNgydtvlGENGGNLSQGERQLLAIARAMLRDPKIL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 147 LMDEPFSGIDMFSREQIANVFTShLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARESEG 216
Cdd:cd03254 162 ILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKKG 229
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
2.32e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 70.11 E-value: 2.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTI---LNAIMALTpinKGQILLNGEAIT--EKSFER-- 72
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLflhFNGILKPT---SGEVLIKGEPIKydKKSLLEvr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 ----ITFI-PDAITMLPNMRISEAMEFMN-DFYTCWNQKRALELLGFFKLSKSDKISS--LSKGNTAKVNLLLGLAMDVD 144
Cdd:PRK13639 78 ktvgIVFQnPDDQLFAPTVEEDVAFGPLNlGLSKEEVEKRVKEALKAVGMEGFENKPPhhLSGGQKKRVAIAGILAMKPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 145 YILMDEPFSGIDMFSREQIANVFtsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13639 158 IIVLDEPTSGLDPMGASQIMKLL--YDLNKEGitIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-200 |
2.34e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 67.47 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNgeaiteksferitfipdait 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 mlPNMRISeamefmndfYtcwnqkralellgffklsksdkISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSRE 161
Cdd:cd03221 61 --STVKIG---------Y----------------------FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE 107
|
170 180 190
....*....|....*....|....*....|....*....
gi 1219749008 162 QIANVFTSHlieDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:cd03221 108 ALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDG 143
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-228 |
3.07e-14 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 69.66 E-value: 3.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI---TEKSFER-ITFI 76
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIsmlSSRQLARrLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEAMEFMNDFY-TCWNQ---------KRALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:PRK11231 82 PQHHLTPEGITVRELVAYGRSPWlSLWGRlsaednarvNQAMEQTRINHLADR-RLTDLSGGQRQRAFLAMVLAQDTPVV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 147 LMDEPFSGIDMfsreqianvftSHLIE---------DRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA-RES 214
Cdd:PRK11231 161 LLDEPTTYLDI-----------NHQVElmrlmrelnTQGktVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVmTPG 229
|
250
....*....|....
gi 1219749008 215 EGKSVVDVMREVYQ 228
Cdd:PRK11231 230 LLRTVFDVEAEIHP 243
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-182 |
3.53e-14 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 68.68 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE--KSFERITF--- 75
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRqrDEYHQDLLylg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 ----IPDAITMLPNMRISEAMEFMNDFYTCWNQKRALELLGFFKLSksdkISSLSKGNTAKVNLL-LGLAMDVDYILmDE 150
Cdd:PRK13538 81 hqpgIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP----VRQLSAGQQRRVALArLWLTRAPLWIL-DE 155
|
170 180 190
....*....|....*....|....*....|....
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLieDRG--VIITTH 182
Cdd:PRK13538 156 PFTAIDKQGVARLEALLAQHA--EQGgmVILTTH 187
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-202 |
3.65e-14 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 69.04 E-value: 3.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEK------------SFERITF-------I 76
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYehkylhskvslvGQEPVLFarslqdnI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNMRISEA----------MEFMNDFYTCWNQKRALellgffklsksdkissLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:cd03248 109 AYGLQSCSFECVKEAaqkahahsfiSELASGYDTEVGEKGSQ----------------LSGGQKQRVAIARALIRNPQVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 147 LMDEPFSGIDMFSREQIAN-VFTSHliEDRGVIITTHEINDIEHlIDKVVLIDEGVV 202
Cdd:cd03248 173 ILDEATSALDAESEQQVQQaLYDWP--ERRTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-156 |
4.44e-14 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 70.13 E-value: 4.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER--ITFIPDA 79
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQrdICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITMLPNMRISEAMEF---MNDFYTCWNQKR---ALEL--LGFFKLSKSDKISSlskGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:PRK11432 87 YALFPHMSLGENVGYglkMLGVPKEERKQRvkeALELvdLAGFEDRYVDQISG---GQQQRVALARALILKPKVLLFDEP 163
|
....*
gi 1219749008 152 FSGID 156
Cdd:PRK11432 164 LSNLD 168
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-67 |
5.72e-14 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 69.03 E-value: 5.72e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE 67
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
14-210 |
7.90e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 69.04 E-value: 7.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-ITFIPDAITML---PNMRIS 89
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKyIRPVRKRIGMVfqfPESQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 E-----AMEF------MNDFYTCWNQKRALELLGFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMF 158
Cdd:PRK13646 100 EdtverEIIFgpknfkMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 159 SREQIANVFTSHLIED-RGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13646 180 SKRQVMRLLKSLQTDEnKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
12-203 |
8.30e-14 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 67.94 E-value: 8.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 12 GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGeaiteksfeRIT--------FIPDA---- 79
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG---------RVSsllglgggFNPELtgre 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ----ITMLPNMRISEAMEFMNDFYtcwnqkrAL-ELLGFFKLsksdKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03220 104 niylNGRLLGLSRKEIDEKIDEII-------EFsELGDFIDL----PVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1219749008 155 IDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
1.46e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 67.91 E-value: 1.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTI---LNAImaLTPiNKGQILLNGEAITEKSFERI-TF 75
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLfrhFNGI--LKP-TSGSVLIRGEPITKENIREVrKF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 I------PDAITMLPNMRISEAMEFMN---DFYTCWNQ-KRALELLGFFKLskSDKIS-SLSKGNTAKVNLLLGLAMDVD 144
Cdd:PRK13652 80 VglvfqnPDDQIFSPTVEQDIAFGPINlglDEETVAHRvSSALHMLGLEEL--RDRVPhHLSGGEKKRVAIAGVIAMEPQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 145 YILMDEPFSGIDMFSREQIANvFTSHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13652 158 VLVLDEPTAGLDPQGVKELID-FLNDLPETYGmtVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-215 |
1.84e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 68.90 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSferitfiP-DA 79
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRS-------PrDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 IT----------ML-PNMRISE----AMEFMNDFYTCWNQ--KRALEL---LGfFKLSKSDKISSLSKGNTAKVNLLLGL 139
Cdd:COG3845 78 IAlgigmvhqhfMLvPNLTVAEnivlGLEPTKGGRLDRKAarARIRELserYG-LDVDPDAKVEDLSVGEQQRVEILKAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 140 AMDVDYILMDEPFSGIdmfSREQIANVFTS--HLIED-RGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:COG3845 157 YRGARILILDEPTAVL---TPQEADELFEIlrRLAAEgKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEE 232
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-206 |
2.55e-13 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 66.36 E-value: 2.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT----EKSFERITF 75
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISkiglHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IP-DAITMLPNMRiseamefMN----DFYTCWNQKRALELLGFFKLsksdkISSLSKGNTAKV-----NL------LLGL 139
Cdd:cd03244 83 IPqDPVLFSGTIR-------SNldpfGEYSDEELWQALERVGLKEF-----VESLPGGLDTVVeeggeNLsvgqrqLLCL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 140 AMDV----DYILMDEPFSGIDMFSREQIANVFTSHLiEDRGVIITTHEINDIEHLiDKVVLIDEGVVIkEF 206
Cdd:cd03244 151 ARALlrksKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDS-DRILVLDKGRVV-EF 218
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
21-203 |
2.79e-13 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 66.36 E-value: 2.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 21 SFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---------------FERITFIPD-AITMLP 84
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPpadrpvsmlfqennlFAHLTVEQNvGLGLSP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 85 NMRISEAmefmndfytcwNQKRALELLGFFKLSKSDK--ISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQ 162
Cdd:cd03298 98 GLKLTAE-----------DRQAIEVALARVGLAGLEKrlPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1219749008 163 IAN-VFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03298 167 MLDlVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-217 |
2.88e-13 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 66.97 E-value: 2.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTiLNAIMALTP---INKGQILLNGEAITEKSFERIT--- 74
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKST-LSKVIAGHPaykILEGDILFKGESILDLEPEERAhlg 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 -FI----PDAITMLPNMriseamefmnDFY-TCWNQKR------ALELLGFFKL--SKSDKI----SSLSK-------GN 129
Cdd:CHL00131 86 iFLafqyPIEIPGVSNA----------DFLrLAYNSKRkfqglpELDPLEFLEIinEKLKLVgmdpSFLSRnvnegfsGG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 130 TAKVNLLLGLA-MDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLI-DKVVLIDEGVVIKEFN 207
Cdd:CHL00131 156 EKKRNEILQMAlLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKpDYVHVMQNGKIIKTGD 235
|
250
....*....|
gi 1219749008 208 AEEARESEGK 217
Cdd:CHL00131 236 AELAKELEKK 245
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-210 |
2.93e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 68.15 E-value: 2.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-----ITF 75
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKahqlgIYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLPNMRISEAMEF----MNDfytcwNQKRALELLGFF--KLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILFglpkRQA-----SMQKMKQLLAALgcQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 150 EPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKV-VLIDEGVV----IKEFNAEE 210
Cdd:PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIsVMRDGTIAlsgkTADLSTDD 231
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-202 |
2.94e-13 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 66.28 E-value: 2.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRK-KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:cd03292 1 IEFINVTKTYPNGtAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TM-------LPNMRISE----AMEFMNDFYTCWNQK--RALELLGFfkLSKSDKISS-LSKGNTAKVNLLLGLAMDVDYI 146
Cdd:cd03292 81 GVvfqdfrlLPDRNVYEnvafALEVTGVPPREIRKRvpAALELVGL--SHKHRALPAeLSGGEQQRVAIARAIVNSPTIL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 147 LMDEPFSGIDMFSREQIANVFTShlIEDRG--VIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:cd03292 159 IADEPTGNLDPDTTWEIMNLLKK--INKAGttVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-203 |
3.94e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 66.95 E-value: 3.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TML--PNMRIseamefmndFYTCWNQKRALEL--LGFFKLS-----------------KSDKISSLSKGNTAKVNLLLGL 139
Cdd:PRK13638 81 TVFqdPEQQI---------FYTDIDSDIAFSLrnLGVPEAEitrrvdealtlvdaqhfRHQPIQCLSHGQKKRVAIAGAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-225 |
4.92e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 67.52 E-value: 4.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAI--MALTPINKGQILLNgEAITEK-------SF-- 70
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIIYH-VALCEKcgyverpSKvg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 71 ------------ERITFIPDAITMLPNMRISEAMEFMNDFYTCWNQ---------------------KRALELLGFFKLS 117
Cdd:TIGR03269 80 epcpvcggtlepEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDtvldnvlealeeigyegkeavGRAVDLIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 118 K--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDmfsrEQIANVFTSHLIE-----DRGVIITTHEINDIEHL 190
Cdd:TIGR03269 160 HriTHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD----PQTAKLVHNALEEavkasGISMVLTSHWPEVIEDL 235
|
250 260 270
....*....|....*....|....*....|....*
gi 1219749008 191 IDKVVLIDEGVVIKEFNAEEARESEGKSVVDVMRE 225
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKE 270
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-205 |
6.01e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 66.30 E-value: 6.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS----------- 69
Cdd:PRK13647 5 IEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENekwvrskvglv 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 -------------FERITFIPDaitmlpNMRIS--EAMEFMNDfytcwnqkrALELLGFFKLskSDKIS-SLSKGNTAKV 133
Cdd:PRK13647 85 fqdpddqvfsstvWDDVAFGPV------NMGLDkdEVERRVEE---------ALKAVRMWDF--RDKPPyHLSYGQKKRV 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 134 NLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-205 |
6.50e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 66.09 E-value: 6.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTIL---NAIMALTPINK--GQILLNGEAI-------TEKS 69
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLrvfNRLIELYPEARvsGEVYLDGQDIfkmdvieLRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 FERITFIPDAItmlPNMRISEAMEFMNDFYTCWNQKRALELLGFFKLSKS-------DKI----SSLSKGNTAKVNLLLG 138
Cdd:PRK14247 84 VQMVFQIPNPI---PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAqlwdevkDRLdapaGKLSGGQQQRLCIARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFL-ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-203 |
8.18e-13 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 64.92 E-value: 8.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF----ERITF 75
Cdd:cd03245 3 IEFRNVSFSYpnQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPadlrRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IP-----------DAITM-LPNM---RISEAMEF--MNDFYTcwNQKRALELLgffklsKSDKISSLSKGNTAKVNLLLG 138
Cdd:cd03245 83 VPqdvtlfygtlrDNITLgAPLAddeRILRAAELagVTDFVN--KHPNGLDLQ------IGERGRGLSGGQRQAVALARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRGVIITTHEINDIEhLIDKVVLIDEGVVI 203
Cdd:cd03245 155 LLNDPPILLLDEPTSAMDMNSEERLKERL-RQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRIV 217
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
17-203 |
8.21e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 66.06 E-value: 8.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAiTEKSFER--ITFIP--------------DAI 80
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP-TRQALQKnlVAYVPqseevdwsfpvlveDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TM-----LPNMRISEA--MEFMNDfytcwnqkrALELLGFFKLsKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK15056 102 MMgryghMGWLRRAKKrdRQIVTA---------ALARVDMVEF-RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1219749008 154 GIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIdEGVVI 203
Cdd:PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-200 |
1.45e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 66.11 E-value: 1.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN--KGQILLNGEAITEKSF---ER--I 73
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGtyEGEIIFEGEELQASNIrdtERagI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIPDAITMLPNMRISEAM----EFMNDFYTCWNQ--KRALELLGFFKL--SKSDKISSLSKGNTAKVNLLLGLAMDVDY 145
Cdd:PRK13549 85 AIIHQELALVKELSVLENIflgnEITPGGIMDYDAmyLRAQKLLAQLKLdiNPATPVGNLGLGQQQLVEIAKALNKQARL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 146 ILMDEPFSGIdmfSREQIANVFtsHLIED---RGV--IITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK13549 165 LILDEPTASL---TESETAVLL--DIIRDlkaHGIacIYISHKLNEVKAISDTICVIRDG 219
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-219 |
2.16e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 64.79 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TML--PNMRISEAMEFMNDFY---------------TCWNQKRALELLGFFKLSKSDkissLSKGNTAKVNLLLGLAMDV 143
Cdd:PRK11831 87 SMLfqSGALFTDMNVFDNVAYplrehtqlpapllhsTVMMKLEAVGLRGAAKLMPSE----LSGGMARRAALARAIALEP 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 144 DYILMDEPFSGIDMFSREQIANVFtSHLIEDRGV--IITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKSV 219
Cdd:PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLI-SELNSALGVtcVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRV 239
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
2.30e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 64.87 E-value: 2.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAItEKSFERITFIPDA 79
Cdd:PRK13636 5 ILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMKLRES 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITML---PNMRISEAMEFMNDFYTCWNQK-----------RALELLGFFKLsKSDKISSLSKGNTAKVNLLLGLAMDVDY 145
Cdd:PRK13636 84 VGMVfqdPDNQLFSASVYQDVSFGAVNLKlpedevrkrvdNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 146 ILMDEPFSGIDMFSREQIANVFTSHLIE-DRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-205 |
3.32e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 63.74 E-value: 3.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERI-----TF 75
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKImreavAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLPNMRISEAMEfMNDFYTCWNQ-----KRALELLGFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLA-MGGFFAERDQfqeriKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-213 |
3.93e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 64.47 E-value: 3.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE-KSFER-ITFIPD 78
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHvPPYQRpINMMFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK11607 99 SYALFPHMTVEQNIAFglkQDKLPKAEIASRVNEMLGLVHMQEfaKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 154 GIDMFSREQIaNVFTSHLIEDRGV--IITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARE 213
Cdd:PRK11607 179 ALDKKLRDRM-QLEVVDILERVGVtcVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-200 |
4.00e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 64.85 E-value: 4.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN--KGQILLNGEAITEKSF---ER--I 73
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGtwDGEIYWSGSPLKASNIrdtERagI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIPDAITMLPNMRISEAMeFMNDFYTCWNQK--------RALELLGFFKLSKSD---KISSLSKGNTAKVNLLLGLAMD 142
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENI-FLGNEITLPGGRmaynamylRAKNLLRELQLDADNvtrPVGDYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTShlIEDRGV--IITTHEINDIEHLIDKVVLIDEG 200
Cdd:TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRD--LKAHGVacVYISHKLNEVKAVCDTICVIRDG 217
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-210 |
4.67e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 63.66 E-value: 4.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKK-------FGRKKV--LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF- 70
Cdd:PRK15112 4 LLEVRNLSKTfryrtgwFRRQTVeaVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYs 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 71 ---ERITFI-PDAITML-PNMRISEAMEF---MN-DFYTCWNQKR---ALELLGFFKLSKSDKISSLSKGNTAKVNLLLG 138
Cdd:PRK15112 84 yrsQRIRMIfQDPSTSLnPRQRISQILDFplrLNtDLEPEQREKQiieTLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRGV--IITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK15112 164 LILRPKVIIADEALASLDMSMRSQLINLML-ELQEKQGIsyIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-205 |
5.31e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 63.95 E-value: 5.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRK-----KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQI--LLNGEAITEKSFERIT 74
Cdd:PRK13651 3 IKVKNIVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 FIPDAITMLPNMR-ISEAME--------FMNDFYTCWNQ---------------------KRALELLGFFKLSKSDKISS 124
Cdd:PRK13651 83 VLEKLVIQKTRFKkIKKIKEirrrvgvvFQFAEYQLFEQtiekdiifgpvsmgvskeeakKRAAKYIELVGLDESYLQRS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 125 ---LSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGV 201
Cdd:PRK13651 163 pfeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGK 242
|
....
gi 1219749008 202 VIKE 205
Cdd:PRK13651 243 IIKD 246
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-200 |
5.44e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 64.42 E-value: 5.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEA---ITEKS-------- 69
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkLDHKLaaqlgigi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 -FERITFIpDAITMLPNMRISE--AMEFMNDFYTCWN--QKRALELLGF--FKLSKSDKISSLSKGNTAKVNLLLGLAMD 142
Cdd:PRK09700 85 iYQELSVI-DELTVLENLYIGRhlTKKVCGVNIIDWRemRVRAAMMLLRvgLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-215 |
5.89e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 64.28 E-value: 5.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDIT-KKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERIT-----FI 76
Cdd:COG3845 259 EVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRrlgvaYI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PD---AITMLPNMRISEAMeFMNDFYTCWNQKR-----------ALELLGFFKL---SKSDKISSLSKGNTAKVnlLLG- 138
Cdd:COG3845 339 PEdrlGRGLVPDMSVAENL-ILGRYRRPPFSRGgfldrkairafAEELIEEFDVrtpGPDTPARSLSGGNQQKV--ILAr 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 139 -LAMDVDYILMDEPFSGIDMFSREQIANvftsHLIE--DRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARE 213
Cdd:COG3845 416 eLSRDPKLLIAAQPTRGLDVGAIEFIHQ----RLLElrDAGaaVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEATR 491
|
..
gi 1219749008 214 SE 215
Cdd:COG3845 492 EE 493
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
16-200 |
8.13e-12 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 63.34 E-value: 8.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGeaiteksfeRITFIPDAITMLPNMrISEAMEF- 94
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---------RISFSSQFSWIMPGT-IKENIIFg 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 -MNDFYTCWNQKRALELL-GFFKLSKSDKIS------SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANV 166
Cdd:cd03291 122 vSYDEYRYKSVVKACQLEeDITKFPEKDNTVlgeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201
|
170 180 190
....*....|....*....|....*....|....*.
gi 1219749008 167 FTSHLIEDRGVIITTheiNDIEHL--IDKVVLIDEG 200
Cdd:cd03291 202 CVCKLMANKTRILVT---SKMEHLkkADKILILHEG 234
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-203 |
1.02e-11 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 63.18 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR---------------------KKVLRGVSFTAEKGEITCLIGINGVGKTT---ILNAImaLTPiNKG 56
Cdd:COG4586 1 IIEVENLSKTYRVyekepglkgalkglfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKSTtikMLTGI--LVP-TSG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 57 QILLNGEAITEKSFE---RITF-----------IP--DAITMLPNM-RISEAmEFmndfytcwnQKRALELLGFFKLskS 119
Cdd:COG4586 78 EVRVLGYVPFKRRKEfarRIGVvfgqrsqlwwdLPaiDSFRLLKAIyRIPDA-EY---------KKRLDELVELLDL--G 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 120 DKIS----SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANvFTSHLIEDRG--VIITTHEINDIEHLIDK 193
Cdd:COG4586 146 ELLDtpvrQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIRE-FLKEYNRERGttILLTSHDMDDIEALCDR 224
|
250
....*....|
gi 1219749008 194 VVLIDEGVVI 203
Cdd:COG4586 225 VIVIDHGRII 234
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
7-204 |
1.07e-11 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 63.51 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 7 ITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS--------FERITFIPD 78
Cdd:PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdaelrevrRKKIAMVFQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRISEAMEF---MNDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK10070 114 SFALMPHMTVLDNTAFgmeLAGINAEERREKALDALRQVGLENyaHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 154 GIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK10070 194 ALDPLIRTEMQDELVKlQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-217 |
1.37e-11 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 61.86 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKK--VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---------- 69
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTlaslrrqigl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 ------------FERITFIPDAITM---LPNMRISEAMEFMNDFYTCWNQKralelLGffklsksDKISSLSKGNTAKVN 134
Cdd:cd03251 81 vsqdvflfndtvAENIAYGRPGATReevEEAARAANAHEFIMELPEGYDTV-----IG-------ERGVKLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 135 LLLGLAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARES 214
Cdd:cd03251 149 IARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ 226
|
...
gi 1219749008 215 EGK 217
Cdd:cd03251 227 GGV 229
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
6-200 |
2.37e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 60.72 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 6 DITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNaIMAL---TPINKGQILLNGEAITeKSFERIT-FIPDAIT 81
Cdd:cd03232 12 TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD-VLAGrktAGVITGEILINGRPLD-KNFQRSTgYVEQQDV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 MLPNMRISEAMEFmndfytcwnqkralellgffklskSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSRE 161
Cdd:cd03232 90 HSPNLTVREALRF------------------------SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1219749008 162 QIANvFTSHLIED-RGVIITTHEIN-DIEHLIDKVVLIDEG 200
Cdd:cd03232 146 NIVR-FLKKLADSgQAILCTIHQPSaSIFEKFDRLLLLKRG 185
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
16-201 |
3.20e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 62.62 E-value: 3.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGeaiteksfeRITFIPDAITMLPNMrISEAMEF- 94
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWIMPGT-IKDNIIFg 510
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 -MNDFYTCWNQKRALEL-LGFFKLSKSDKIS------SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANV 166
Cdd:TIGR01271 511 lSYDEYRYTSVIKACQLeEDIALFPEKDKTVlgeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590
|
170 180 190
....*....|....*....|....*....|....*..
gi 1219749008 167 FTSHLIEDRGVIITTheiNDIEHL--IDKVVLIDEGV 201
Cdd:TIGR01271 591 CLCKLMSNKTRILVT---SKLEHLkkADKILLLHEGV 624
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-203 |
3.79e-11 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 62.10 E-value: 3.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITkkF---GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE---KSF-ERIT 74
Cdd:COG1132 340 IEFENVS--FsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDltlESLrRQIG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 FIP-DAI----TMLPNMRIS------EAMEfmndfytcwnqkRALELLGFfklskSDKISSLSKG-NT----AKVNL--- 135
Cdd:COG1132 418 VVPqDTFlfsgTIRENIRYGrpdatdEEVE------------EAAKAAQA-----HEFIEALPDGyDTvvgeRGVNLsgg 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 136 ---LLGLA----MDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRGVIITTHEINDIEHLiDKVVLIDEGVVI 203
Cdd:COG1132 481 qrqRIAIArallKDPPILILDEATSALDTETEALIQEAL-ERLMKGRTTIVIAHRLSTIRNA-DRILVLDDGRIV 553
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-183 |
5.45e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 59.96 E-value: 5.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF---ERITFIP 77
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCtyqKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISEAMEFmnDFYTCWNQKRALELLGFFKLSKSDKISS--LSKGNTAKVNLLLGLAMDVDYILMDEPFSGI 155
Cdd:PRK13540 81 HRSGINPYLTLRENCLY--DIHFSPGAVGITELCRLFSLEHLIDYPCglLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180
....*....|....*....|....*...
gi 1219749008 156 DMFSREQIANVFTSHLIEDRGVIITTHE 183
Cdd:PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
14-210 |
6.87e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 60.61 E-value: 6.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT----EKSFERITFIPDAITMLPNMRIS 89
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgNKNLKKLRKKVSLVFQFPEAQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 EAMEFMNDFYTCWN--------QKRALELLGFFKLSKSDKISS---LSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMF 158
Cdd:PRK13641 100 ENTVLKDVEFGPKNfgfsedeaKEKALKWLKKVGLSEDLISKSpfeLSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 159 SREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13641 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
10-205 |
7.31e-11 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 60.47 E-value: 7.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 10 KFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE------KSFER---ITFiPDAI 80
Cdd:PRK10419 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraqrKAFRRdiqMVF-QDSI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TMLpNMR------ISEAMEFMNDFYTCWNQKRALELLGFFKLSKS--DKI-SSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:PRK10419 100 SAV-NPRktvreiIREPLRHLLSLDKAERLARASEMLRAVDLDDSvlDKRpPQLSGGQLQRVCLARALAVEPKLLILDEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 152 FSGIDMFSREQIANVFTShLIEDRGV--IITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK10419 179 VSNLDLVLQAGVIRLLKK-LQQQFGTacLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
14-215 |
8.74e-11 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.19 E-value: 8.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE---KSFER-ITFIPDAITMLPNMRIS 89
Cdd:PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwssKAFARkVAYLPQQLPAAEGMTVR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 EAMEF--------MNDFYTCWNQK--RALELLGFFKLSkSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFS 159
Cdd:PRK10575 104 ELVAIgrypwhgaLGRFGAADREKveEAISLVGLKPLA-HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 160 REQIAnVFTSHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:PRK10575 183 QVDVL-ALVHRLSQERGltVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-203 |
2.04e-10 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 59.32 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKK----VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE----- 71
Cdd:COG1135 1 MIELENLSKTFPTKGgpvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERelraa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 --RITFIP------DAITMLPNmrISEAMEFMNdfytcWN----QKRALELLGFFKLskSDKI----SSLSKGNTAKVnl 135
Cdd:COG1135 81 rrKIGMIFqhfnllSSRTVAEN--VALPLEIAG-----VPkaeiRKRVAELLELVGL--SDKAdaypSQLSGGQKQRV-- 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 136 llG----LAMDVDYILMDEPFSGIDMFSREQIANvftshLIED----RG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:COG1135 150 --GiaraLANNPKVLLCDEATSALDPETTRSILD-----LLKDinreLGltIVLITHEMDVVRRICDRVAVLENGRIV 220
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
6-200 |
2.69e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 59.51 E-value: 2.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 6 DITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN--KGQILLNGEAITEKSFERITFIPDAITML 83
Cdd:PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTKQILKRTGFVTQDDILY 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 84 PNMRISEAMEF-----MNDFYTCWNQKRALE-LLGFFKLSKSDK-------ISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:PLN03211 153 PHLTVRETLVFcsllrLPKSLTKQEKILVAEsVISELGLTKCENtiignsfIRGISGGERKRVSIAHEMLINPSLLILDE 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLIEDRGVIITTHEIND-IEHLIDKVVLIDEG 200
Cdd:PLN03211 233 PTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSrVYQMFDSVLVLSEG 283
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-218 |
2.95e-10 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 59.35 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF----GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQ--------ILLNGEAITEK 68
Cdd:PRK10535 4 LLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTyrvagqdvATLDADALAQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 69 SFERITFIPDAITMLPNMRISEAMEfMNDFY----TCWNQKRALELLGffKLSKSDKI----SSLSKGNTAKVNLLLGLA 140
Cdd:PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVE-VPAVYagleRKQRLLRAQELLQ--RLGLEDRVeyqpSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 141 MDVDYILMDEPFSGIDMFSREQIANVFtsHLIEDRG--VIITTHEiNDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKS 218
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAIL--HQLRDRGhtVIIVTHD-PQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGT 237
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-151 |
3.99e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 58.92 E-value: 3.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 4 VKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEA------------------- 64
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKGLrigylpqeppldddltvld 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 65 ITEKSFERITFIP---DAITMLPN------MRISEAMEFMNDFYTcWN-QKRALELLGFFKLSKSD---KISSLSKGNTA 131
Cdd:COG0488 81 TVLDGDAELRALEaelEELEAKLAepdedlERLAELQEEFEALGG-WEaEARAEEILSGLGFPEEDldrPVSELSGGWRR 159
|
170 180
....*....|....*....|
gi 1219749008 132 KVNLLLGLAMDVDYILMDEP 151
Cdd:COG0488 160 RVALARALLSEPDLLLLDEP 179
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
14-219 |
4.22e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 58.14 E-value: 4.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---------------------FER 72
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklsdirkkvglvfqypeyqlFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 -----ITFIPDAITMLP---NMRISEAMEFMNDFYTCWNQKRALEllgffklsksdkissLSKGNTAKVNLLLGLAMDVD 144
Cdd:PRK13637 100 tiekdIAFGPINLGLSEeeiENRVKRAMNIVGLDYEDYKDKSPFE---------------LSGGQKRRVAIAGVVAMEPK 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 145 YILMDEPFSGIDMFSREQIAN-VFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI------KEFNAEEARESEGK 217
Cdd:PRK13637 165 ILILDEPTAGLDPKGRDEILNkIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCElqgtprEVFKEVETLESIGL 244
|
..
gi 1219749008 218 SV 219
Cdd:PRK13637 245 AV 246
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
3-205 |
4.91e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 57.28 E-value: 4.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFG------RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNgeaITEKSFERITFI 76
Cdd:COG2401 26 RVAIVLEAFGvelrvvERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVD---VPDNQFGREASL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITMLPNmrISEAMEFMND--FYTCWNQKRalellgffklsksdKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:COG2401 103 IDAIGRKGD--FKDAVELLNAvgLSDAVLWLR--------------RFKELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 155 ID-MFSREQIANVftSHLIEDRG---VIITTHE--INDIEHliDKVVLIDEGVVIKE 205
Cdd:COG2401 167 LDrQTAKRVARNL--QKLARRAGitlVVATHHYdvIDDLQP--DLLIFVGYGGVPEE 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-211 |
5.87e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 58.48 E-value: 5.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-----ITFIPD---------AITM 82
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDglangIVYISEdrkrdglvlGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 LPNMRISEAMEFMNDFYTCWNQKRALELLGFFKL------SKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGID 156
Cdd:PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLfniktpSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 157 MFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA 211
Cdd:PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
15-203 |
8.76e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 57.44 E-value: 8.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 15 KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT----EKSFERITFIPDAITMLPNMRISE 90
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSstskQKEIKPVRKKVGVVFQFPESQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 91 AMEFMNDFYTCWN--------QKRALELLGFFKLSKSDKISS---LSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFS 159
Cdd:PRK13643 100 ETVLKDVAFGPQNfgipkekaEKIAAEKLEMVGLADEFWEKSpfeLSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1219749008 160 REQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-66 |
1.10e-09 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 56.92 E-value: 1.10e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT 66
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE 70
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
16-203 |
1.15e-09 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 56.76 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN--------KGQILLNGE---AITEKSFERI----------- 73
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarvTGDVTLNGEplaAIDAPRLARLravlpqaaqpa 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 -TFIPDAITML---PNMRISEAMEfMNDFYTCWnqkRALELLGFFKLSKSDkISSLSKGNTAKVNLLLGLAM-------- 141
Cdd:PRK13547 96 fAFSAREIVLLgryPHARRAGALT-HRDGEIAW---QALALAGATALVGRD-VTTLSGGELARVQFARVLAQlwpphdaa 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 142 -DVDYILMDEPFSGIDMFSREQIANVFTSHLIEDR-GVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:PRK13547 171 qPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNlGVLAIVHDPNLAARHADRIAMLADGAIV 234
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-203 |
1.18e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 57.12 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDI--TKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTI---LNAIMALTPINKGQILLNGEAITEKSF----ER 72
Cdd:PRK13640 6 VEFKHVsfTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTIsklINGLLLPDDNPNSKITVDGITLTAKTVwdirEK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 I--------------TFIPDAITMLPNMRI--SEAMEFMNDfytcwnqkrALELLGFFKLSKSDKiSSLSKGNTAKVNLL 136
Cdd:PRK13640 86 VgivfqnpdnqfvgaTVGDDVAFGLENRAVprPEMIKIVRD---------VLADVGMLDYIDSEP-ANLSGGQKQRVAIA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 137 LGLAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRG--VIITTHEINDIEHlIDKVVLIDEGVVI 203
Cdd:PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLI-RKLKKKNNltVISITHDIDEANM-ADQVLVLDDGKLL 222
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-66 |
1.96e-09 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 56.49 E-value: 1.96e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT 66
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-207 |
2.22e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.94 E-value: 2.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN-----KGQILLNGEAITEKSFERITf 75
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNpevtiTGSIVYNGHNIYSPRTDTVD- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITML---PN-------------MRIS---------EAMEFMNDFYTCWNQkralellgfFKLSKSDKISSLSKGNT 130
Cdd:PRK14239 84 LRKEIGMVfqqPNpfpmsiyenvvygLRLKgikdkqvldEAVEKSLKGASIWDE---------VKDRLHDSALGLSGGQQ 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 131 AKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIkEFN 207
Cdd:PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYN 229
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-215 |
2.79e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.28 E-value: 2.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKfgRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE--------- 71
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANeainhgfal 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 -----RITFIPDAITMLPNMRISEAMEFMNDFYTCWNQKR------ALELLGFFKLSKSDKISSLSKGNTAKVNLLLGLA 140
Cdd:PRK10982 328 vteerRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMksdtqwVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 141 MDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEARESE 215
Cdd:PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNE 482
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-156 |
3.90e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 56.10 E-value: 3.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLnGEAIteksfeRITFIP---D 78
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV------KLAYVDqsrD 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITmlPNMRISEAMEFMNDFYTCWN---QKRAleLLGFFKLSKSD---KISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:TIGR03719 396 ALD--PNKTVWEEISGGLDIIKLGKreiPSRA--YVGRFNFKGSDqqkKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471
|
....
gi 1219749008 153 SGID 156
Cdd:TIGR03719 472 NDLD 475
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-65 |
4.62e-09 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 55.04 E-value: 4.62e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAI--M-ALTPINK--GQILLNGEAI 65
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrMnDLIPGARveGEILLDGEDI 80
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-157 |
4.82e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 54.73 E-value: 4.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAiteksfeRITFIPDAI 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL-------RIGYVPQKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TMLPNMRISeAMEFM--------NDFYTCWNQKRALELLGFfklsksdKISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:PRK09544 77 YLDTTLPLT-VNRFLrlrpgtkkEDILPALKRVQAGHLIDA-------PMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148
|
....*
gi 1219749008 153 SGIDM 157
Cdd:PRK09544 149 QGVDV 153
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
15-203 |
6.31e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 55.01 E-value: 6.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 15 KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITeKSFERITFIPDaitmlpnMRISEAMEF 94
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP-ANLKKIKEVKR-------LRKEIGLVF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 MNDFYTCWNQ---------------------KRALELLGFFKLSKSDKISS---LSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:PRK13645 97 QFPEYQLFQEtiekdiafgpvnlgenkqeayKKVPELLKLVQLPEDYVKRSpfeLSGGQKRRVALAGIIAMDGNTLVLDE 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 151 PFSGIDMFSREQIANVFTsHLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:PRK13645 177 PTGGLDPKGEEDFINLFE-RLNKEYKkrIIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-203 |
6.92e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 55.22 E-value: 6.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITkkFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS----FERI 73
Cdd:PRK11160 339 LTLNNVS--FTypdqPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSeaalRQAI 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIPDAI-----TMLPNMRIseAMEFMNDfytcwNQ-KRALELLGFFKLSKSDKISS---------LSKGNTAKvnllLG 138
Cdd:PRK11160 417 SVVSQRVhlfsaTLRDNLLL--AAPNASD-----EAlIEVLQQVGLEKLLEDDKGLNawlgeggrqLSGGEQRR----LG 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 139 LAM----DVDYILMDEPFSGIDMFSREQIANVFTSHlIEDRGVIITTHEINDIEHLiDKVVLIDEGVVI 203
Cdd:PRK11160 486 IARallhDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGLEQF-DRICVMDNGQII 552
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
14-216 |
8.68e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 55.11 E-value: 8.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE---------------------KSF-E 71
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQydhhylhrqvalvgqepvlfsGSVrE 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 72 RITFIPDAITMLPNMRISEA-------MEFMNDFYTcwnqkralellgffklSKSDKISSLSKGNTAKVNLLLGLAMDVD 144
Cdd:TIGR00958 574 NIAYGLTDTPDEEIMAAAKAanahdfiMEFPNGYDT----------------EVGEKGSQLSGGQKQRIAIARALVRKPR 637
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 145 YILMDEPFSGIDMFSrEQIanVFTSHLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARESEG 216
Cdd:TIGR00958 638 VLILDEATSALDAEC-EQL--LQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-211 |
1.07e-08 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 53.56 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAI 80
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TMLPNMRISEAMEFMNDFYTCWNQ----KRALELLGFFKLSKS--DK-ISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQqpdpAIFLDDLERFALPDTilTKnIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 154 GIDMFSREQIANVFTsHLIEDRGVII--TTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA 211
Cdd:PRK10247 167 ALDESNKHNVNEIIH-RYVREQNIAVlwVTHDKDEINHADKVITLQPHAGEMQEARYELA 225
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-200 |
1.10e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 55.02 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 27 GEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI---TEKSFERITFIP--DAITMLPNMR------------IS 89
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIltnISDVHQNMGYCPqfDAIDDLLTGRehlylyarlrgvPA 2044
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 EAMEFMNDfytcWN-QKRALELLgffklskSDKIS-SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVF 167
Cdd:TIGR01257 2045 EEIEKVAN----WSiQSLGLSLY-------ADRLAgTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113
|
170 180 190
....*....|....*....|....*....|...
gi 1219749008 168 TSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:TIGR01257 2114 VSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-66 |
1.45e-08 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 54.04 E-value: 1.45e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF--GRKKV--LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT 66
Cdd:PRK11153 1 MIELKNISKVFpqGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
14-210 |
1.61e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 53.49 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT--------------------------- 66
Cdd:PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkklkplrkkvgivfqfpehqlf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 67 EKSFER-ITFIPDaitmlpNMRISEAMEfmndfytcwnQKRALELLGFFKLSKSDKISS---LSKGNTAKVNLLLGLAMD 142
Cdd:PRK13634 100 EETVEKdICFGPM------NFGVSEEDA----------KQKAREMIELVGLPEELLARSpfeLSGGQMRRVAIAGVLAME 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKlHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-204 |
1.72e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 53.46 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR--KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERI-TFI- 76
Cdd:PRK13632 7 MIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIrKKIg 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 -----PD----AITM-------LPNMRISEamEFMNDFYTCWNQKRALELLgffkLSKSDkiSSLSKGNTAKVNLLLGLA 140
Cdd:PRK13632 87 iifqnPDnqfiGATVeddiafgLENKKVPP--KKMKDIIDDLAKKVGMEDY----LDKEP--QNLSGGQKQRVAIASVLA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 141 MDVDYILMDEPFSGIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEhLIDKVVLIDEGVVIK 204
Cdd:PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDlRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA 222
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-192 |
2.42e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 53.12 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN-----KGQILLNGEAITEKS------- 69
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELEsevrvEGRVEFFNQNIYERRvnlnrlr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 -----------------FERITFIPDAITMLPNMRISEAMEFMNDFYTCWNQKRAlellgffKLSKSdkISSLSKGNTAK 132
Cdd:PRK14258 88 rqvsmvhpkpnlfpmsvYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKS--ALDLSGGQQQR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 133 VNLLLGLAMDVDYILMDEPFSGIDmfsreQIANVFTSHLIEDRG------VIITTHEINDIEHLID 192
Cdd:PRK14258 159 LCIARALAVKPKVLLMDEPCFGLD-----PIASMKVESLIQSLRlrseltMVIVSHNLHQVSRLSD 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-205 |
2.44e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.47 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEK----SFER-ITF 75
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNgpksSQEAgIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLPNMRISEAM----EFMNDFYTC-WNQ--KRALELLGFFKLSKSDK--ISSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:PRK10762 84 IHQELNLIPQLTIAENIflgrEFVNRFGRIdWKKmyAEADKLLARLNLRFSSDklVGELSIGEQQMVEIAKVLSFESKVI 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 147 LMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
18-210 |
2.44e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 52.78 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 18 RGVSFTAEKGEITCLIGINGVGKTTILNAIMALTP----INKGQILLNGEAITEKSFERITFipdAITM---------LP 84
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPagvrQTAGRVLLDGKPVAPCALRGRKI---ATIMqnprsafnpLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 85 NMRiSEAMEfmndfyTCW------NQKRALELLGFFKLSKSDKISSL-----SKGNTAKVNLLLGLAMDVDYILMDEPFS 153
Cdd:PRK10418 97 TMH-THARE------TCLalgkpaDDATLTAALEAVGLENAARVLKLypfemSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 154 GIDMFSREQIANVFTShLIEDR--GVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK10418 170 DLDVVAQARILDLLES-IVQKRalGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-66 |
2.49e-08 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 51.83 E-value: 2.49e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 2 IEVKDITKKFG--RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT 66
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-202 |
2.93e-08 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 52.71 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMAL-----TPINKGQILLN-------------- 61
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgdkSAGSHIELLGRtvqregrlardirk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 62 GEAITEKSFERITFIpDAITMLPNMRISeAMEFMNDFYTC--W----NQKRALELLGFFKLSK--SDKISSLSKGNTAKV 133
Cdd:PRK09984 84 SRANTGYIFQQFNLV-NRLSVLENVLIG-ALGSTPFWRTCfsWftreQKQRALQALTRVGMVHfaHQRVSTLSGGQQQRV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 134 NLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRD-INQNDGitVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-206 |
2.97e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 52.03 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRK--KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAIT----EKSFERITF 75
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIStiplEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 76 IPDAITMLpnmriSEAMEFMNDFYtcwNQKRALELLGFFKLSKSDkiSSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGI 155
Cdd:cd03369 87 IPQDPTLF-----SGTIRSNLDPF---DEYSDEEIYGALRVSEGG--LNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 156 DMFSREQIANVFTShLIEDRGVIITTHEINDIEHLiDKVVLIDEGVViKEF 206
Cdd:cd03369 157 DYATDALIQKTIRE-EFTNSTILTIAHRLRTIIDY-DKILVMDAGEV-KEY 204
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-208 |
3.10e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 53.38 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 3 EVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI----TEKSFER-ITFIP 77
Cdd:PRK11288 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMrfasTTAALAAgVAIIY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISE---------AMEFMNDFYTCWNQKRALELLGfFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILM 148
Cdd:PRK11288 86 QELHLVPEMTVAEnlylgqlphKGGIVNRRLLNYEAREQLEHLG-VDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 149 DEPFSGIDmfSREqIANVFTshLI-----EDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNA 208
Cdd:PRK11288 165 DEPTSSLS--ARE-IEQLFR--VIrelraEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-202 |
3.52e-08 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 52.37 E-value: 3.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 4 VKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQiLLNGEAITEKSFE--RITFiPDAiT 81
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTAPLAEAREdtRLMF-QDA-R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 MLPNMRISE--AMEFMNDfytcWnQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDM 157
Cdd:PRK11247 92 LLPWKKVIDnvGLGLKGQ----W-RDAALQALAAVGLADraNEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1219749008 158 FSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:PRK11247 167 LTRIEMQDLIES-LWQQHGftVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-175 |
4.65e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 52.59 E-value: 4.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQIllngeAITEKSfeRITFIP-DAI 80
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-----KWSENA--NIGYYAqDHA 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TMLPN-MRIseaMEFMNDfytcWNQKRALEL-----LGFFKLSKSD---KISSLSKGNtaKVNLLLGLAM--DVDYILMD 149
Cdd:PRK15064 393 YDFENdLTL---FDWMSQ----WRQEGDDEQavrgtLGRLLFSQDDikkSVKVLSGGE--KGRMLFGKLMmqKPNVLVMD 463
|
170 180 190
....*....|....*....|....*....|....*
gi 1219749008 150 EPFSGIDMFSREQIAN---------VFTSHlieDR 175
Cdd:PRK15064 464 EPTNHMDMESIESLNMalekyegtlIFVSH---DR 495
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
7-205 |
6.12e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 51.91 E-value: 6.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 7 ITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMAL-TPINkGQILLNGEAI----TEKSFERITFIPDAIT 81
Cdd:PRK10253 13 LTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLmTPAH-GHVWLDGEHIqhyaSKEVARRIGLLAQNAT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 MLPNMRISEAMEF----MNDFYTCWNQK------RALELLGFFKLSKSDkISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:PRK10253 92 TPGDITVQELVARgrypHQPLFTRWRKEdeeavtKAMQATGITHLADQS-VDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 152 FSGIDMFSREQIANVFtSHLIEDRGVIITT--HEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:PRK10253 171 TTWLDISHQIDLLELL-SELNREKGYTLAAvlHDLNQACRYASHLIALREGKIVAQ 225
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
7.64e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 51.68 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKK--VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER------ 72
Cdd:PRK13648 7 IIVFKNVSFQYQSDAsfTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKlrkhig 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 ITFI-PDAITMLPNMRISEAMEFMNDFYTCWNQKR----ALELLGFFKLSKSDKiSSLSKGNTAKVNLLLGLAMDVDYIL 147
Cdd:PRK13648 87 IVFQnPDNQFVGSIVKYDVAFGLENHAVPYDEMHRrvseALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 148 MDEPFSGIDMFSREQIANVfTSHLIEDRGVII--TTHEINDIEHlIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13648 166 LDEATSMLDPDARQNLLDL-VRKVKSEHNITIisITHDLSEAME-ADHVIVMNKGTVYKEGTPTE 228
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-59 |
9.16e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 51.08 E-value: 9.16e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQIL 59
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-210 |
9.94e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 51.17 E-value: 9.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---------- 69
Cdd:PRK13635 6 IRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETvwdvrrqvgm 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 --------FERITFIPDAITMLPNMRI--SEAMEFMNDfytcwnqkrALELLGFFKLSKSDKiSSLSKGNTAKVNLLLGL 139
Cdd:PRK13635 86 vfqnpdnqFVGATVQDDVAFGLENIGVprEEMVERVDQ---------ALRQVGMEDFLNREP-HRLSGGQKQRVAIAGVL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIanVFTSHLIEDRG---VIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13635 156 ALQPDIIILDEATSMLDPRGRREV--LETVRQLKEQKgitVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE 226
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-202 |
1.11e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 51.27 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGR---KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEksfERITFIP 77
Cdd:PRK13650 4 IIEVKNLTFKYKEdqeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE---ENVWDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITML---PNMRISEAMEFMNDFYTCWNQ-----------KRALELLGFFKLsKSDKISSLSKGNTAKVNLLLGLAMDV 143
Cdd:PRK13650 81 HKIGMVfqnPDNQFVGATVEDDVAFGLENKgipheemkervNEALELVGMQDF-KEREPARLSGGQKQRVAIAGAVAMRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 144 DYILMDEPFSGIDMFSREQIANVFTShlIEDR---GVIITTHEINDIEhLIDKVVLIDEGVV 202
Cdd:PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKG--IRDDyqmTVISITHDLDEVA-LSDRVLVMKNGQV 218
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-204 |
1.37e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 51.00 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRK-----KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEK-SFERIT 74
Cdd:PRK13631 21 ILRVKNLYCVFDEKqenelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKkNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 FIPDA--ITMLPNMRISEAMEFMNDFYTCW-----------------NQKRALELLGFFKLSKSDKIS-------SLSKG 128
Cdd:PRK13631 101 TNPYSkkIKNFKELRRRVSMVFQFPEYQLFkdtiekdimfgpvalgvKKSEAKKLAKFYLNKMGLDDSylerspfGLSGG 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 129 NTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-210 |
1.42e-07 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFG-RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE---KSFER-ITFI 76
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvtlDSLRRaIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 P-DAI----TMLPNMR-------------------ISEAMEFMNDFYTCWNQKRALEllgffklsksdkissLSKGNTAK 132
Cdd:cd03253 81 PqDTVlfndTIGYNIRygrpdatdeevieaakaaqIHDKIMRFPDGYDTIVGERGLK---------------LSGGEKQR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 133 VNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEE 210
Cdd:cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-217 |
1.49e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 51.33 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN--KGQILLNGEAITEKSF---ER--I 73
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGsyEGEILFDGEVCRFKDIrdsEAlgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 74 TFIPDAITMLPNMRISEAMEFMN--------DfytcWNQ--KRALELLGFFKLSKS--DKISSLSKGNTAKVNLLLGLAM 141
Cdd:NF040905 81 VIIHQELALIPYLSIAENIFLGNerakrgviD----WNEtnRRARELLAKVGLDESpdTLVTDIGVGKQQLVEIAKALSK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 142 DVDYILMDEPFSGI-DMFSReqianvftsHLIE------DRGV--IITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEAR 212
Cdd:NF040905 157 DVKLLILDEPTAALnEEDSA---------ALLDlllelkAQGItsIIISHKLNEIRRVADSITVLRDGRTIETLDCRADE 227
|
....*
gi 1219749008 213 ESEGK 217
Cdd:NF040905 228 VTEDR 232
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
29-203 |
1.65e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 51.03 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 29 ITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI----------TEKsfERITFI-PDAiTMLPNMRISEamefmND 97
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLfdaekgiclpPEK--RRIGYVfQDA-RLFPHYKVRG-----NL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 98 FYTCWNQKRAL-----ELLGFFKLSKSDKIsSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDM-FSREQIAnvFTSHL 171
Cdd:PRK11144 98 RYGMAKSMVAQfdkivALLGIEPLLDRYPG-SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLpRKRELLP--YLERL 174
|
170 180 190
....*....|....*....|....*....|....
gi 1219749008 172 IEDRGVII--TTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:PRK11144 175 AREINIPIlyVSHSLDEILRLADRVVVLEQGKVK 208
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-58 |
1.79e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.89 E-value: 1.79e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQI 58
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
13-206 |
1.86e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 50.98 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 13 RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTP-INKGQILLNGEAITEKSFERItfIPDAITMLPNMRISEA 91
Cdd:TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGKPVDIRNPAQA--IRAGIAMVPEDRKRHG 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 92 ------------MEFMNDFYTCWNQKRALEL---------LGFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:TIGR02633 350 ivpilgvgknitLSVLKSFCFKMRIDAAAELqiigsaiqrLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEF 206
Cdd:TIGR02633 430 PTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-72 |
1.90e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 50.95 E-value: 1.90e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 2 IEVKDITKKFGRKKVLRG-----VSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER 72
Cdd:COG4615 328 LELRGVTYRYPGEDGDEGftlgpIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNREA 403
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
16-163 |
1.96e-07 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 50.20 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF--------ERITFIPDAITMLPNMR 87
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSaakaelrnQKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 88 ISE--AMEFM-NDFYTCWNQKRALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQ 162
Cdd:PRK11629 104 ALEnvAMPLLiGKKKPAEINSRALEMLAAVGLEHraNHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADS 183
|
.
gi 1219749008 163 I 163
Cdd:PRK11629 184 I 184
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-216 |
2.14e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 50.79 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKV--LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSferitfipda 79
Cdd:PRK11176 342 IEFRNVTFTYPGKEVpaLRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT---------- 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 itmLPNMR-----ISEAMEFMND------------FYTCWNQKRALEL---LGFF-KLSKS-DKI-----SSLSKGNTAK 132
Cdd:PRK11176 412 ---LASLRnqvalVSQNVHLFNDtianniayarteQYSREQIEEAARMayaMDFInKMDNGlDTVigengVLLSGGQRQR 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 133 VNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEAR 212
Cdd:PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELL 566
|
....
gi 1219749008 213 ESEG 216
Cdd:PRK11176 567 AQNG 570
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
17-204 |
2.38e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 50.13 E-value: 2.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-ITFIPDAITML---PNMRISEAM 92
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKdIKQIRKKVGLVfqfPESQLFEET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 93 EFMNDFYTCWN--------QKRALELLGFFKLSKS--DKIS-SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSRE 161
Cdd:PRK13649 103 VLKDVAFGPQNfgvsqeeaEALAREKLALVGISESlfEKNPfELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1219749008 162 QIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK13649 183 ELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
14-211 |
2.81e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.55 E-value: 2.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILlngeaiTEKSferITFIP-DAITMLPNMRIS--- 89
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW------AERS---IAYVPqQAWIMNATVRGNilf 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 ---EAMEFMNDFYTCWNQKRALELL-GFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIA- 164
Cdd:PTZ00243 744 fdeEDAARLADAVRVSQLEADLAQLgGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVe 823
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1219749008 165 NVFTSHLiEDRGVIITTHEINDIEHlIDKVVLIDEGVVikEFNAEEA 211
Cdd:PTZ00243 824 ECFLGAL-AGKTRVLATHQVHVVPR-ADYVVALGDGRV--EFSGSSA 866
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
16-182 |
3.41e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 49.08 E-value: 3.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFER-ITFIPDAITMLPNMRISEAMEF 94
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRfMAYLGHLPGLKADLSTLENLHF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 MNDFYTCWNQK---RALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHL 171
Cdd:PRK13543 106 LCGLHGRRAKQmpgSALAIVGLAGYEDT-LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL 184
|
170
....*....|.
gi 1219749008 172 IEDRGVIITTH 182
Cdd:PRK13543 185 RGGGAALVTTH 195
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
9-203 |
3.74e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 48.80 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 9 KKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN---KGQILLNGEAITE--KSFER-ITFIPDAITM 82
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEfaEKYPGeIIYVSEEDVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 LPNMRISEAMEFmndfytcwnqkrALELLGffklskSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQ 162
Cdd:cd03233 95 FPTLTVRETLDF------------ALRCKG------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALE 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1219749008 163 IANVF--TSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVI 203
Cdd:cd03233 157 ILKCIrtMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-200 |
4.76e-07 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 48.72 E-value: 4.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDA 79
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 80 ITML---------PNMRISEAMEFMNDFYTCWNQKR----ALELLGFFKLSKSDKIsSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:PRK10908 81 IGMIfqdhhllmdRTVYDNVAIPLIIAGASGDDIRRrvsaALDKVGLLDKAKNFPI-QLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 147 LMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
18-200 |
5.09e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 49.66 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 18 RGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSF-ERITfipDAITMLPNMRISEAMeFMn 96
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTaQRLA---RGLVYLPEDRQSSGL-YL- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 97 DFYTCWN------------QKRALE---------LLGfFKLSKSDK-ISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:PRK15439 355 DAPLAWNvcalthnrrgfwIKPAREnavleryrrALN-IKFNHAEQaARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1219749008 155 IDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK15439 434 VDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-210 |
5.31e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 49.80 E-value: 5.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF-----GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQI-LLNGEA---ITEKSF- 70
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEwvdMTKPGPd 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 71 -------------ERITFIPDAiTMLPNMRISEAMEFMNDF------YTC----WNQKRALELLgffklsksDKI-SSLS 126
Cdd:TIGR03269 359 grgrakryigilhQEYDLYPHR-TVLDNLTEAIGLELPDELarmkavITLkmvgFDEEKAEEIL--------DKYpDELS 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 127 KGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIE-DRGVIITTHEINDIEHLIDKVVLIDEGVVIKE 205
Cdd:TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509
|
....*
gi 1219749008 206 FNAEE 210
Cdd:TIGR03269 510 GDPEE 514
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-210 |
6.28e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 48.94 E-value: 6.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 6 DITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPI-----NKGQILLNGEAITEKS----------- 69
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGRSIFNYRdvlefrrrvgm 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 -FERITFIPDAI--TMLPNMRISEAMEfmNDFYTCWNQKRALELlGFFKLSK---SDKISSLSKGNTAKVNLLLGLAMDV 143
Cdd:PRK14271 106 lFQRPNPFPMSImdNVLAGVRAHKLVP--RKEFRGVAQARLTEV-GLWDAVKdrlSDSPFRLSGGQQQLLCLARTLAVNP 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 144 DYILMDEPFSGIDMFSREQIANvFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK14271 183 EVLLLDEPTSALDPTTTEKIEE-FIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-204 |
7.61e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 48.68 E-value: 7.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN-----KGQILLNGEAITEKSFERITfI 76
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDPIE-V 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 77 PDAITML-------PNMRISEAMEFMNDFYTCWNQKRALELLGFFKLSKS-----------DKISSLSKGNTAKVNLLLG 138
Cdd:PRK14267 84 RREVGMVfqypnpfPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAalwdevkdrlnDYPSNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 139 LAMDVDYILMDEPFSGIDMFSREQIANVFTsHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-210 |
9.44e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 48.55 E-value: 9.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRK---KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIP 77
Cdd:PRK13642 4 ILEVENLVFKYEKEsdvNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAITMLPNMRISEAMEFMNDFYTCWNQ--------KRALE-LLGFFKLS-KSDKISSLSKGNTAKVNLLLGLAMDVDYIL 147
Cdd:PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQgipreemiKRVDEaLLAVNMLDfKTREPARLSGGQKQRVAVAGIIALRPEIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 148 MDEPFSGIDMFSREQIANVFtsHLIEDR---GVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK13642 164 LDESTSMLDPTGRQEIMRVI--HEIKEKyqlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSE 226
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
20-192 |
1.31e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 46.97 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 20 VSFTAEKgeITCLIGINGVGKTTILNAI-----MALTPINKGQILLNGEAITEKSFERITFIpdaitmlpnMRISEAMEF 94
Cdd:cd03227 16 VTFGEGS--LTIITGPNGSGKSTILDAIglalgGAQSATRRRSGVKAGCIVAAVSAELIFTR---------LQLSGGEKE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 MndfytcwnqkralellgffklsksdkiSSLSkgntakvnLLLGLA--MDVDYILMDEPFSGIDMFSREQIANVFTSHLI 172
Cdd:cd03227 85 L---------------------------SALA--------LILALAslKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129
|
170 180
....*....|....*....|...
gi 1219749008 173 EDRGVIITTHE---INDIEHLID 192
Cdd:cd03227 130 KGAQVIVITHLpelAELADKLIH 152
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
14-214 |
1.65e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 48.43 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMA-LTPINKGQILLNGEaiteksferITFIPDaITMLPNMRISEAM 92
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGeLSHAETSSVVIRGS---------VAYVPQ-VSWIFNATVRENI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 93 EFMNDFYTC--WNQ------KRALELLGFFKLSK-SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQI 163
Cdd:PLN03232 700 LFGSDFESEryWRAidvtalQHDLDLLPGRDLTEiGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 164 ANVFTSHLIEDRGVIITTHEINDIEhLIDKVVLIDEGVVIKEFNAEEARES 214
Cdd:PLN03232 780 FDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
13-211 |
1.99e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.00 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 13 RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTP-INKGQILLNGEAITEKSFERItfIPDAITMLPN------ 85
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRNPQQA--IAQGIAMVPEdrkrdg 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 86 ----MRISEAMEFMN-DFYTCWN-------QKRALELLGFFKLSKSD---KISSLSKGNTAKVNLLLGLAMDVDYILMDE 150
Cdd:PRK13549 352 ivpvMGVGKNITLAAlDRFTGGSriddaaeLKTILESIQRLKVKTASpelAIARLSGGNQQKAVLAKCLLLNPKILILDE 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 151 PFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEEA 211
Cdd:PRK13549 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
16-202 |
2.99e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERI----TFIPD---------AITM 82
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELrrqfSMIPQdpvlfdgtvRQNV 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 LPNMRISEAmefmndfyTCWnqkRALELLGFfklskSDKISSLSKGNTAKV-----NLLLG-----------LAMDVDYI 146
Cdd:PTZ00243 1405 DPFLEASSA--------EVW---AALELVGL-----RERVASESEGIDSRVleggsNYSVGqrqlmcmaralLKKGSGFI 1468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 147 LMDEPFSGIDMFSREQIANV----FTSHLiedrgVIITTHEINDIEHLiDKVVLIDEGVV 202
Cdd:PTZ00243 1469 LMDEATANIDPALDRQIQATvmsaFSAYT-----VITIAHRLHTVAQY-DKIIVMDHGAV 1522
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-150 |
3.26e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 47.27 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKFGRKKVLRG-VSFTAEKGEITCLIGINGVGKTTIlnaIMALTPIN---KGQILLNGEAITEKSFERITFIP 77
Cdd:PRK10522 323 LELRNVTFAYQDNGFSVGpINLTIKRGELLFLIGGNGSGKSTL---AMLLTGLYqpqSGEILLDGKPVTAEQPEDYRKLF 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 78 DAI----TMLPNMRISEAMEFMNDFYTCWnqkraLELLGF-FKLSKSD-KIS--SLSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:PRK10522 400 SAVftdfHLFDQLLGPEGKPANPALVEKW-----LERLKMaHKLELEDgRISnlKLSKGQKKRLALLLALAEERDILLLD 474
|
.
gi 1219749008 150 E 150
Cdd:PRK10522 475 E 475
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
15-65 |
3.89e-06 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 46.38 E-value: 3.89e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1219749008 15 KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI 65
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI 67
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
5-202 |
4.30e-06 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 46.56 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 5 KDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGeaiteksfERITFIPDA---IT 81
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE--------KRMNDVPPAergVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 82 ML-------PNMRISEAMEF--------MNDFYTCWNQkrALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYI 146
Cdd:PRK11000 79 MVfqsyalyPHLSVAENMSFglklagakKEEINQRVNQ--VAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 147 LMDEPFSGIDMFSREQ----IANVftsHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVV 202
Cdd:PRK11000 156 LLDEPLSNLDAALRVQmrieISRL---HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-64 |
4.55e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 46.81 E-value: 4.55e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEA 64
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
14-198 |
5.25e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 45.86 E-value: 5.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKG-----EITCLIGINGVGKTTILNAIMALTPINKGQIllngeaitEKSFERITFIPDAITMLPNMRI 88
Cdd:cd03237 7 KKTLGEFTLEVEGGsisesEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI--------EIELDTVSYKPQYIKADYEGTV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 89 SE-AMEFMNDFYTC--WNQkralELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQI 163
Cdd:cd03237 79 RDlLSSITKDFYTHpyFKT----EIAKPLQIEQilDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 1219749008 164 ANVFtSHLIE--DRGVIITTHEINDIEHLIDKVVLID 198
Cdd:cd03237 155 SKVI-RRFAEnnEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-69 |
5.39e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 46.60 E-value: 5.39e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 1 MIEVKDITKKFG----RKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPIN----KGQILLNGEAITEKS 69
Cdd:COG4172 6 LLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpSGSILFDGQDLLGLS 82
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-208 |
6.94e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.48 E-value: 6.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFE----RITFIP-DAITMLPNMRise 90
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHdlrfKITIIPqDPVLFSGSLR--- 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 91 amefMN-DFYTCWNQKR---ALEL--LGFFKLSKSDKIS--------SLSKGNTAKVNLLLGLAMDVDYILMDEPFSGID 156
Cdd:TIGR00957 1378 ----MNlDPFSQYSDEEvwwALELahLKTFVSALPDKLDhecaeggeNLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 157 MFSREQIANVFTSHLiEDRGVIITTHEINDIEHLIdKVVLIDEGVViKEFNA 208
Cdd:TIGR00957 1454 LETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYT-RVIVLDKGEV-AEFGA 1502
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-67 |
7.53e-06 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 45.69 E-value: 7.53e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1219749008 20 VSFTAEKGEITCLIGINGVGKTTILNAIMALTPiNKGQILLNGEAITE 67
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEA 61
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-183 |
1.23e-05 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 44.77 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKK----VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS------- 69
Cdd:PRK10584 6 IVEVHHLKKSVGQGEhelsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDeearakl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 --------FERITFIPdAITMLPNMRISEAMEFMNDFYTcwnQKRALELLGFFKLSKSDK--ISSLSKGNTAKVNLLLGL 139
Cdd:PRK10584 86 rakhvgfvFQSFMLIP-TLNALENVELPALLRGESSRQS---RNGAKALLEQLGLGKRLDhlPAQLSGGEQQRVALARAF 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1219749008 140 AMDVDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHE 183
Cdd:PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFS-LNREHGttLILVTHD 206
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
125-198 |
1.23e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.39 E-value: 1.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 125 LSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTHEINDIEHLIDKV-VLID 198
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAgVLAD 210
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
14-204 |
1.64e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 44.65 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITeksFERITFIPDAITM----------- 82
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY---FGKDIFQIDAIKLrkevgmvfqqp 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 83 --LPNMRISEAMEFMNDFYTCWNQKR-------ALELLGFFKlSKSDKISS----LSKGNTAKVNLLLGLAMDVDYILMD 149
Cdd:PRK14246 100 npFPHLSIYDNIAYPLKSHGIKEKREikkiveeCLRKVGLWK-EVYDRLNSpasqLSGGQQQRLTIARALALKPKVLLMD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 150 EPFSGIDMFSREQIANVFTsHLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK14246 179 EPTSMIDIVNSQAIEKLIT-ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-72 |
1.86e-05 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 45.06 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 2 IEVKDITKKF-----------GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPiNKGQILLNGEAITEKSF 70
Cdd:COG4172 276 LEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGLSR 354
|
..
gi 1219749008 71 ER 72
Cdd:COG4172 355 RA 356
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-187 |
3.13e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 26 KGEITCLIGINGVGKTTILNAIMA-LTPINKGQILLNGEAITEKSFERITFIPDAITMLPNMRISEamefmndfytcwnQ 104
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALAReLGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR-------------L 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 105 KRALELLgffklsksdkisslskgntakvnlllgLAMDVDYILMDEPFSGIDMFSREQI------ANVFTSHLIEDRGVI 178
Cdd:smart00382 68 RLALALA---------------------------RKLKPDVLILDEITSLLDAEQEALLllleelRLLLLLKSEKNLTVI 120
|
....*....
gi 1219749008 179 ITTHEINDI 187
Cdd:smart00382 121 LTTNDEKDL 129
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
16-216 |
3.62e-05 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 43.63 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGE--AITEKSF----------ERITF---IPDAI 80
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHdlALADPAWlrrqvgvvlqENVLFnrsIRDNI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 81 TM----LPNMRISEA--MEFMNDFytcwnqkrALELLGFFKLSKSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSG 154
Cdd:cd03252 97 ALadpgMSMERVIEAakLAGAHDF--------ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 155 IDMFSREQIANvfTSHLIED-RGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARESEG 216
Cdd:cd03252 169 LDYESEHAIMR--NMHDICAgRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENG 228
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-65 |
3.93e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 43.96 E-value: 3.93e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 2 IEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAI 65
Cdd:NF033858 267 IEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV 330
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
15-216 |
4.44e-05 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 43.68 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 15 KVLRG-VSFTAEKGEITCLIGINGVGKTTILNAIMALTPInKGQILLNGEAITEKSFER----ITF-----------IPD 78
Cdd:PRK11174 363 KTLAGpLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESwrkhLSWvgqnpqlphgtLRD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITM-LPNM---RISEAME--FMNDFYTCWNQKRALELlgffklskSDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPF 152
Cdd:PRK11174 442 NVLLgNPDAsdeQLQQALEnaWVSEFLPLLPQGLDTPI--------GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 153 SGIDMFSREQIANVFTsHLIEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARESEG 216
Cdd:PRK11174 514 ASLDAHSEQLVMQALN-AASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQAGG 575
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-210 |
4.80e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 43.58 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKV-LRGV---SFTAEKGEITCLIGINGVGKTTILNAIMALTP----INKGQILLNGE---AITEKs 69
Cdd:PRK11022 3 LLNVDKLSVHFGDESApFRAVdriSYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDypgrVMAEKLEFNGQdlqRISEK- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 70 fERITFIPDAITMLpnmrISEAMEFMNDFYTC-----------------WNQKRALELLGFFKLskSDKIS-------SL 125
Cdd:PRK11022 82 -ERRNLVGAEVAMI----FQDPMTSLNPCYTVgfqimeaikvhqggnkkTRRQRAIDLLNQVGI--PDPASrldvyphQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 126 SKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTS-HLIEDRGVIITTHEINDIEHLIDKVVLIDEGVVIK 204
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLElQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
|
....*.
gi 1219749008 205 EFNAEE 210
Cdd:PRK11022 235 TGKAHD 240
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
6-74 |
4.89e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 43.94 E-value: 4.89e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1219749008 6 DITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTP---INKGQILLNGEAItEKSFERIT 74
Cdd:TIGR00956 768 EVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTtgvITGGDRLVNGRPL-DSSFQRSI 838
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1-225 |
5.32e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 43.64 E-value: 5.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGrkkvlrGVSFTAEKGEITC--LIGI---NGVGKTT---ILNAImaLTPiNKGQILLNgeaiteksfER 72
Cdd:PRK13409 340 LVEYPDLTKKLG------DFSLEVEGGEIYEgeVIGIvgpNGIGKTTfakLLAGV--LKP-DEGEVDPE---------LK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 73 ITFIPDAITMLPNMRISEAMEFMNDFY-TCWNQKRALELLGFFKLSKSdKISSLSKGNTAKVNLLLGLAMDVDYILMDEP 151
Cdd:PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLgSSYYKSEIIKPLQLERLLDK-NVKDLSGGELQRVAIAACLSRDADLYLLDEP 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1219749008 152 FSGIDMFSREQIANVFtSHLIEDRG--VIITTHEINDIEHLIDKVVLidegvvikeFNAEEARESEGKSVVDvMRE 225
Cdd:PRK13409 481 SAHLDVEQRLAVAKAI-RRIAEEREatALVVDHDIYMIDYISDRLMV---------FEGEPGKHGHASGPMD-MRE 545
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
104-222 |
6.61e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 43.19 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 104 QKRALELLGFFKLSKS--DKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITT 181
Cdd:NF000106 122 RARADELLERFSLTEAagRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTT 201
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1219749008 182 HEINDIEHLIDKVVLIDEGVVIKEFNAEEARESEGKSVVDV 222
Cdd:NF000106 202 QYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGRTLQI 242
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-62 |
1.16e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 42.15 E-value: 1.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 2 IEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPInKGQILLNG 62
Cdd:cd03289 3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQIDG 64
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
15-194 |
1.58e-04 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 42.00 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 15 KVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAITML---------PN 85
Cdd:PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIfqdplaslnPR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 86 MRISEAM-EFMNDFYTcwnqkralellgffKLSKSDkISSLSKGNTAKVNLL------------------LGLA----MD 142
Cdd:PRK15079 115 MTIGEIIaEPLRTYHP--------------KLSRQE-VKDRVKAMMLKVGLLpnlinryphefsggqcqrIGIAraliLE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1219749008 143 VDYILMDEPFSGIDMFSREQIANVFTShLIEDRG--VIITTHEINDIEHLIDKV 194
Cdd:PRK15079 180 PKLIICDEPVSALDVSIQAQVVNLLQQ-LQREMGlsLIFIAHDLAVVKHISDRV 232
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-66 |
1.71e-04 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 42.26 E-value: 1.71e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 2 IEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIM-ALTPiNKGQILLNGEAIT 66
Cdd:PRK13657 335 VEFDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQrVFDP-QSGRILIDGTDIR 400
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-210 |
2.37e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 41.23 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF------GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNG------------ 62
Cdd:PRK13633 4 MIKCKNVSYKYesneesTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtsdeenlwdi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 63 ----------------EAITEksfERITFIPDAITMLPN---MRISEAMEFMNdfytCWNQKRALELLgffklsksdkis 123
Cdd:PRK13633 84 rnkagmvfqnpdnqivATIVE---EDVAFGPENLGIPPEeirERVDESLKKVG----MYEYRRHAPHL------------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 124 sLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFtSHLIEDRG--VIITTHEINDIEHlIDKVVLIDEGV 201
Cdd:PRK13633 145 -LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI-KELNKKYGitIILITHYMEEAVE-ADRIIVMDSGK 221
|
....*....
gi 1219749008 202 VIKEFNAEE 210
Cdd:PRK13633 222 VVMEGTPKE 230
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-67 |
2.73e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 41.37 E-value: 2.73e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1219749008 1 MIEVKDITKKF-GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITE 67
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE 70
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1-218 |
3.78e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 41.11 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSferITFIPD 78
Cdd:PLN03232 1234 SIKFEDVHLRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG---LTDLRR 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 79 AITMLPNMRI--SEAMEFMNDFYTCWNQKRALELLGFFKLskSDKISSLSKGNTAKV-----------NLLLGLAMDV-- 143
Cdd:PLN03232 1311 VLSIIPQSPVlfSGTVRFNIDPFSEHNDADLWEALERAHI--KDVIDRNPFGLDAEVseggenfsvgqRQLLSLARALlr 1388
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1219749008 144 --DYILMDEPFSGIDMFSREQIANVFTSHLiEDRGVIITTHEINDIEHlIDKVVLIDEGVVIKEFNAEEARESEGKS 218
Cdd:PLN03232 1389 rsKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSA 1463
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
29-97 |
4.08e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.45 E-value: 4.08e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 29 ITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAITMLPNMRISEAMEFMND 97
Cdd:pfam13304 1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDG 69
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-206 |
4.45e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 40.18 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEaiteksferITFIpdAITMLPNMRIS--EAMEF 94
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE---------VSVI--AISAGLSGQLTgiENIEF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 95 MndfYTCWNQKR------ALELLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFS-GIDMFSREQIAN 165
Cdd:PRK13546 109 K---MLCMGFKRkeikamTPKIIEFSELGEfiYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSvGDQTFAQKCLDK 185
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1219749008 166 VFtSHLIEDRGVIITTHEINDIEHLIDKVVLIdEGVVIKEF 206
Cdd:PRK13546 186 IY-EFKEQNKTIFFVSHNLGQVRQFCTKIAWI-EGGKLKDY 224
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-210 |
4.54e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 40.99 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 17 LRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAITMLPNMR-------IS 89
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRgadmamiFQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 90 EAMEFMNDFYTCWNQ--------------------KRALELLgffKLSKSDKISS-----LSKGNTAKVNLLLGLAMDVD 144
Cdd:PRK10261 112 EPMTSLNPVFTVGEQiaesirlhqgasreeamveaKRMLDQV---RIPEAQTILSryphqLSGGMRQRVMIAMALSCRPA 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 145 YILMDEPFSGIDMFSREQI---ANVFTSHLieDRGVIITTHEINDIEHLIDKVVLIDEGVVIKEFNAEE 210
Cdd:PRK10261 189 VLIADEPTTALDVTIQAQIlqlIKVLQKEM--SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQ 255
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
21-200 |
5.49e-04 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 39.95 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 21 SFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS---------------FERITFIPD-AITMLP 84
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPpsrrpvsmlfqennlFSHLTVAQNiGLGLNP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 85 NMRISEAmefmndfytcwnQKRALELLGfFKLSKSDKI----SSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSR 160
Cdd:PRK10771 99 GLKLNAA------------QREKLHAIA-RQMGIEDLLarlpGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1219749008 161 EQIANVFtSHLIEDRGV--IITTHEINDIEHLIDKVVLIDEG 200
Cdd:PRK10771 166 QEMLTLV-SQVCQERQLtlLMVSHSLEDAARIAPRSLVVADG 206
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-182 |
5.56e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 40.16 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 1 MIEVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTiLNAIMALT---PINKGQILLNGEAITEKSFERIT--- 74
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKST-LSATLAGRedyEVTGGTVEFKGKDLLELSPEDRAgeg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 75 ------------------FIPDAITMLPNMRISEAMEFMnDFYTCWNQKRALELLGFFKLSKSDKIsSLSKGNTAKVNLL 136
Cdd:PRK09580 80 ifmafqypveipgvsnqfFLQTALNAVRSYRGQEPLDRF-DFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDIL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1219749008 137 LGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHLIEDRGVIITTH 182
Cdd:PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-62 |
8.45e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 40.28 E-value: 8.45e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1219749008 2 IEVKDITKKF--GRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPiNKGQILLNG 62
Cdd:TIGR01271 1218 MDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG 1279
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-69 |
9.40e-04 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 39.70 E-value: 9.40e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1219749008 2 IEVKDITKKFGR-KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS 69
Cdd:PRK10790 341 IDIDNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS 409
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
14-187 |
1.54e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 38.31 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 14 KKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKSFERITFIPDAITMLPNMRISEAME 93
Cdd:PRK13541 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1219749008 94 FMNDFYTCWNQKRAleLLGFFKLSK--SDKISSLSKGNTAKVNLLLGLAMDVDYILMDEPFSGIDMFSREQIANVFTSHL 171
Cdd:PRK13541 93 FWSEIYNSAETLYA--AIHYFKLHDllDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA 170
|
170
....*....|....*.
gi 1219749008 172 IEDRGVIITTHEINDI 187
Cdd:PRK13541 171 NSGGIVLLSSHLESSI 186
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
16-62 |
2.70e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 38.57 E-value: 2.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1219749008 16 VLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNG 62
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG 1300
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-69 |
3.51e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 38.17 E-value: 3.51e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1219749008 5 KDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTILNAIMALTPINKGQILLNGEAITEKS 69
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
27-50 |
5.65e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 37.59 E-value: 5.65e-03
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-44 |
5.91e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 37.24 E-value: 5.91e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1219749008 3 EVKDITKKFGRKKVLRGVSFTAEKGEITCLIGINGVGKTTIL 44
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL 362
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
26-47 |
9.21e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 36.52 E-value: 9.21e-03
|
| |
