Cycloisomaltooligosaccharide glucanotransferase precursor [Sedimentisphaera salicampi]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||||||
| Glyco_hydro_66 super family | cl48165 | Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including ... |
76-645 | 4.05e-139 | |||||||||
Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including cycloisomaltooligosaccharide glucanotransferase (EC:2.4.1.-) and dextranase (EC:3.2.1.11) activities. The actual alignment was detected with superfamily member pfam13199: Pssm-ID: 463807 [Multi-domain] Cd Length: 557 Bit Score: 422.17 E-value: 4.05e-139
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| CBM35_Lmo2446-like | cd04083 | Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes ... |
658-778 | 1.22e-30 | |||||||||
Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases. : Pssm-ID: 271149 Cd Length: 125 Bit Score: 116.59 E-value: 1.22e-30
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| Name | Accession | Description | Interval | E-value | |||||||||
| Glyco_hydro_66 | pfam13199 | Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including ... |
76-645 | 4.05e-139 | |||||||||
Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including cycloisomaltooligosaccharide glucanotransferase (EC:2.4.1.-) and dextranase (EC:3.2.1.11) activities. Pssm-ID: 463807 [Multi-domain] Cd Length: 557 Bit Score: 422.17 E-value: 4.05e-139
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| GH66 | cd14745 | Glycoside Hydrolase Family 66; Glycoside Hydrolase Family 66 contains proteins characterized ... |
171-514 | 1.69e-103 | |||||||||
Glycoside Hydrolase Family 66; Glycoside Hydrolase Family 66 contains proteins characterized as cycloisomaltooligosaccharide glucanotransferase (CITase) and dextranases from a variety of bacteria. CITase cyclizes part of a (1-6)-alpha-D-glucan (dextrans) chain by formation of a (1-6)-alpha-D-glucosidic bond. Dextranases catalyze the endohydrolysis of (1-6)-alpha-D-glucosidic linkages in dextran. Some members contain Carbohydrate Binding Module 35 (CBM35) domains, either C-terminal or inserted in the domain or both. Pssm-ID: 270613 Cd Length: 331 Bit Score: 321.50 E-value: 1.69e-103
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| CBM35_Lmo2446-like | cd04083 | Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes ... |
658-778 | 1.22e-30 | |||||||||
Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases. Pssm-ID: 271149 Cd Length: 125 Bit Score: 116.59 E-value: 1.22e-30
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| CBM_35 | pfam16990 | Carbohydrate binding module (family 35); This is a mannan-specific carbohydrate binding domain, ... |
658-778 | 5.28e-11 | |||||||||
Carbohydrate binding module (family 35); This is a mannan-specific carbohydrate binding domain, previously known as the X4 module. Unlike other carbohydrate binding modules, binding to substrate causes a conformational change. Pssm-ID: 293595 Cd Length: 119 Bit Score: 60.62 E-value: 5.28e-11
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| Name | Accession | Description | Interval | E-value | |||||||||
| Glyco_hydro_66 | pfam13199 | Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including ... |
76-645 | 4.05e-139 | |||||||||
Glycosyl hydrolase family 66; This family is a set of glycosyl hydrolase enzymes including cycloisomaltooligosaccharide glucanotransferase (EC:2.4.1.-) and dextranase (EC:3.2.1.11) activities. Pssm-ID: 463807 [Multi-domain] Cd Length: 557 Bit Score: 422.17 E-value: 4.05e-139
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| GH66 | cd14745 | Glycoside Hydrolase Family 66; Glycoside Hydrolase Family 66 contains proteins characterized ... |
171-514 | 1.69e-103 | |||||||||
Glycoside Hydrolase Family 66; Glycoside Hydrolase Family 66 contains proteins characterized as cycloisomaltooligosaccharide glucanotransferase (CITase) and dextranases from a variety of bacteria. CITase cyclizes part of a (1-6)-alpha-D-glucan (dextrans) chain by formation of a (1-6)-alpha-D-glucosidic bond. Dextranases catalyze the endohydrolysis of (1-6)-alpha-D-glucosidic linkages in dextran. Some members contain Carbohydrate Binding Module 35 (CBM35) domains, either C-terminal or inserted in the domain or both. Pssm-ID: 270613 Cd Length: 331 Bit Score: 321.50 E-value: 1.69e-103
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| CBM35_Lmo2446-like | cd04083 | Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes ... |
658-778 | 1.22e-30 | |||||||||
Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446; This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases. Pssm-ID: 271149 Cd Length: 125 Bit Score: 116.59 E-value: 1.22e-30
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| CBM35_pectate_lyase-like | cd04082 | Carbohydrate Binding Module family 35 (CBM35), pectate lyase-like; appended mainly to enzymes ... |
657-778 | 1.69e-19 | |||||||||
Carbohydrate Binding Module family 35 (CBM35), pectate lyase-like; appended mainly to enzymes that bind mannan (Man), xylan, glucuronic acid (GlcA) and possibly glucans; This family includes carbohydrate binding module family 35 (CBM35) domains that are non-catalytic carbohydrate binding domains that are appended mainly to enzymes that bind mannan (Man), xylan, glucuronic acid (GlcA) and possibly glucans. Included in this family are CBM35s of pectate lyases, including pectate lyase 10A from Cellvibrio japonicas, these enzymes release delta-4,5-anhydrogalaturonic acid (delta4,5-GalA) from pectin, thus identifying a signature molecule for plant cell wall degradation. CBM35s are unique in that they display conserved specificity through extensive sequence similarity but divergent function through their appended catalytic modules. They are known to bind alpha-D-galactose (Gal), mannan (Man), xylan, glucuronic acid (GlcA), a beta-polymer of mannose, and possibly glucans, forming four subfamilies based on general ligand specificities (galacto, urono, manno, and gluco configurations). In contrast to most CBMs that are generally rigid proteins, CBM35 undergoes significant conformational change upon ligand binding. Some CBM35s bind their ligands in a calcium-dependent manner, especially those binding uronic acids. Pssm-ID: 271148 Cd Length: 124 Bit Score: 84.92 E-value: 1.69e-19
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| CBM35_mannanase-like | cd04086 | Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, ... |
658-778 | 4.87e-17 | |||||||||
Carbohydrate Binding Module 35 (CBM35); appended to several carbohydrate binding enzymes, including several glycoside hydrolase (GH) family 26 mannanase domains; This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes, including periplasmic component of ABC-type sugar transport system involved in carbohydrate transport and metabolism, and several glycoside hydrolase (GH) domains, including GH26. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB35s belonging to this family are mannanase A from Clostridium thermocellum (GH26), Man26B from Paenibacillus sp. BME-14 (GH26), and the multifunctional Cel44C-Man26A from Paenibacillus polymyxa GS01 (which has two GH domains, GH44 and GH26). GH26 mainly includes mannan endo-1,4-beta-mannosidase which hydrolyzes 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans, and galactoglucomannans, but displays little activity towards other plant cell wall polysaccharides. A few proteins belonging to this family have additional CBM3 domains; these CBM3s are not found in the CBM6-CBM35-CBM36_like superfamily. Pssm-ID: 271152 Cd Length: 119 Bit Score: 77.64 E-value: 4.87e-17
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| CBM6-CBM35-CBM36_like | cd02795 | Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily; Carbohydrate binding module ... |
658-778 | 2.89e-13 | |||||||||
Carbohydrate Binding Module 6 (CBM6) and CBM35_like superfamily; Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules. This alignment model also contains the C-terminal domains of bacterial insecticidal toxins, where they may be involved in determining insect specificity through carbohydrate binding functionality. Pssm-ID: 271143 Cd Length: 124 Bit Score: 67.21 E-value: 2.89e-13
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| CBM_35 | pfam16990 | Carbohydrate binding module (family 35); This is a mannan-specific carbohydrate binding domain, ... |
658-778 | 5.28e-11 | |||||||||
Carbohydrate binding module (family 35); This is a mannan-specific carbohydrate binding domain, previously known as the X4 module. Unlike other carbohydrate binding modules, binding to substrate causes a conformational change. Pssm-ID: 293595 Cd Length: 119 Bit Score: 60.62 E-value: 5.28e-11
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| CBM35_galactosidase-like | cd04081 | Carbohydrate Binding Module family 35 (CBM35); appended mainly to enzymes that bind ... |
658-766 | 1.94e-08 | |||||||||
Carbohydrate Binding Module family 35 (CBM35); appended mainly to enzymes that bind alpha-D-galactose (CBM35-Gal), including glycoside hydrolase (GH) families GH27 and GH43; This family includes carbohydrate binding module family 35 (CBM35); these are non-catalytic carbohydrate binding domains that are appended mainly to enzymes that bind alpha-D-galactose (CBM35-Gal), including glycoside hydrolase (GH) families GH27 and GH43. Examples of proteins which contain CBM35s belonging to this family includes the CBM35 of an exo-beta-1,3-galactanase from Phanerochaete chrysosporium 9 (Pc1,3Gal43A) which is appended to a GH43 domain, and the CBM35 domain of two bifunctional proteins with beta-L-arabinopyranosidase/alpha-D-galactopyranosidase activities from Fusarium oxysporum 12S, Foap1 and Foap2 (Fo/AP1 and Fo/AP2), that are appended to GH27 domains. CBM35s are unique in that they display conserved specificity through extensive sequence similarity but divergent function through their appended catalytic modules. They are known to bind alpha-D-galactose (Gal), mannan (Man), xylan, glucuronic acid (GlcA), a beta-polymer of mannose, and possibly glucans, forming four subfamilies based on general ligand specificities (galacto, urono, manno, and gluco configurations). Some CBM35s bind their ligands in a calcium-dependent manner. In contrast to most CBMs that are generally rigid proteins, CBM35 undergoes significant conformational change upon ligand binding. GH43 includes beta-xylosidases and beta-xylanases, using aryl-glycosides as substrates, while family GH27 includes alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases. Pssm-ID: 271147 Cd Length: 125 Bit Score: 53.45 E-value: 1.94e-08
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| CBM6_cellulase-like | cd04080 | Carbohydrate Binding Module 6 (CBM6); appended to glycoside hydrolase (GH) domains, including ... |
700-778 | 5.10e-05 | |||||||||
Carbohydrate Binding Module 6 (CBM6); appended to glycoside hydrolase (GH) domains, including GH5 (cellulase); This family includes carbohydrate binding module 6 (CBM6) domains that are appended to several glycoside hydrolase (GH) domains, including GH5 (cellulase) and GH16, as well as to coagulation factor 5/8 carbohydrate-binding domains. CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. The CBM6s are appended to GHs that display a diversity of substrate specificities. For some members of this family information is available about the specific substrates of the appended GH domains. It includes the CBM domains of various enzymes involved in cell wall degradation including, an extracellular beta-1,3-glucanase from Lysobacter enzymogenes encoded by the gluC gene (its catalytic domain belongs to the GH16 family), the tandem CBM domains of Pseudomonas sp. PE2 beta-1,3(4)-glucanase A (its catalytic domain also belongs to GH16), and a family 6 CBM from Cellvibrio mixtus Endoglucanase 5A (CmCBM6) which binds to the beta1,4-beta1,3-mixed linked glucans lichenan, and barley beta-glucan, cello-oligosaccharides, insoluble forms of cellulose, the beta1,3-glucan laminarin, and xylooligosaccharides, and the CBM6 of Fibrobacter succinogenes S85 XynD xylanase, appended to a GH10 domain, and Cellvibrio japonicas Cel5G appended to a GH5 (cellulase) domain. GH5 (cellulase) family includes enzymes with several known activities such as endoglucanase, beta-mannanase, and xylanase, which are involved in the degradation of cellulose and xylans. GH16 family includes enzymes with lichenase, xyloglucan endotransglycosylase (XET), and beta-agarase activities. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. For CmCBM6 it has been shown that these two binding sites have different ligand specificities. Pssm-ID: 271146 Cd Length: 144 Bit Score: 43.76 E-value: 5.10e-05
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| GHL10 | pfam02638 | Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins ... |
230-334 | 5.51e-03 | |||||||||
Glycosyl hydrolase-like 10; This is family of bacterial glycosyl-hydrolase-like proteins falling into the family GHL10 as described above,. Pssm-ID: 251441 [Multi-domain] Cd Length: 311 Bit Score: 39.50 E-value: 5.51e-03
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