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Conserved domains on  [gi|1184126351|gb|ARJ56646|]
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2-oxoglutarate:acceptor oxidoreductase, gamma subunit [Campylobacter cuniculorum DSM 23162 = LMG 24588]

Protein Classification

oorC family protein( domain architecture ID 10013072)

oorC family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
oorC PRK08441
2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
 1-183 1.51e-124

2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed


:

Pssm-ID: 181425 [Multi-domain]  Cd Length: 183  Bit Score: 348.26  E-value: 1.51e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGY 80
Cdd:PRK08441    1 MRAQLRFTGVGGQGVLLAGEILAEAKIKAGGYGVKASTYTSQVRGGPTKVDIILDDKEILYPYANEGEIDFMLSTAQISY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDKLKDTMLHMVP 160
Cdd:PRK08441   81 NQFKSGVKEGGIIVVEPNLVKPTEEDKKKWQIYEIPIITIAKDEVGNVITQSVVALAIAVEMTKCVDEDIVKDTMLSKVP 160

                         170       180
                  ....*....|....*....|...
gi 1184126351 161 PKTRDANAKAFDLGIKYASEAKP 183
Cdd:PRK08441  161 AKVAEANKKAFELGKKYALEALK 183
 
Name Accession Description Interval E-value
oorC PRK08441
2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
 1-183 1.51e-124

2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed


Pssm-ID: 181425 [Multi-domain]  Cd Length: 183  Bit Score: 348.26  E-value: 1.51e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGY 80
Cdd:PRK08441    1 MRAQLRFTGVGGQGVLLAGEILAEAKIKAGGYGVKASTYTSQVRGGPTKVDIILDDKEILYPYANEGEIDFMLSTAQISY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDKLKDTMLHMVP 160
Cdd:PRK08441   81 NQFKSGVKEGGIIVVEPNLVKPTEEDKKKWQIYEIPIITIAKDEVGNVITQSVVALAIAVEMTKCVDEDIVKDTMLSKVP 160

                         170       180
                  ....*....|....*....|...
gi 1184126351 161 PKTRDANAKAFDLGIKYASEAKP 183
Cdd:PRK08441  161 AKVAEANKKAFELGKKYALEALK 183
PorG COG1014
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma ...
 1-183 2.89e-40

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440638 [Multi-domain]  Cd Length: 424  Bit Score: 140.98  E-value: 2.89e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAveGEVDFMLSTADKGY 80
Cdd:COG1014     3 MDLEIRIAGVGGQGVVTAGKILAKAAMREGYYVQGYPSYGSEQRGGPVVSHVRISDEPIRSPLI--DEADVLIALDPEEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDY-------KKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKcIDLDKLKD 153
Cdd:COG1014    81 DRVLDGLKPGGVLIVNSSLVPPEVWRLpqealerKDIRVYVIDATKIAKELLGNARVANTVMLGALAALLG-LPLEALEE 159

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1184126351 154 TMLHMV---PPKTRDANAKAFDLGIKYASEAKP 183
Cdd:COG1014   160 AIEETFgkkGEKVVELNLKAFEAGYEAAKEVFA 192
POR pfam01558
Pyruvate ferredoxin/flavodoxin oxidoreductase; This family includes a region of the large ...
 11-174 9.62e-38

Pyruvate ferredoxin/flavodoxin oxidoreductase; This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganizms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.


Pssm-ID: 426323 [Multi-domain]  Cd Length: 172  Bit Score: 127.80  E-value: 9.62e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  11 GGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILfPYAVEGEVDFMLSTADKGYKGFRGGVKEG 90
Cdd:pfam01558   1 GGQGVVTAGKILAKAAARAGYYVQATPEYGSEIRGGPVVSHVRISDEPIV-PAIPVGEADLLVALDPETLDRHLDGLKPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  91 GVIVVEPNLVHPESEDYKKW------KVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKcIDLDKLKDTMLHMVP--PK 162
Cdd:pfam01558  80 GIIIYNSSEVPPELLEKDLPayprlaRVYGVPATEIAKEAGGNSRAANTVMLGALAALLG-LPLEALEEAIKKRFPgkAK 158

                         170
                  ....*....|..
gi 1184126351 163 TRDANAKAFDLG 174
Cdd:pfam01558 159 VIELNLKAFRAG 170
PorC_KorC TIGR02175
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; A number ...
 3-180 4.13e-18

2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins (H. pylori) used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.


Pssm-ID: 274014 [Multi-domain]  Cd Length: 177  Bit Score: 77.39  E-value: 4.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   3 YQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEgEVDF-------MLST 75
Cdd:TIGR02175   2 IEIRFHGRGGQGAVTASQLLAEAAFLEGKYAQAFPEFGAERRGAPVRAFLRISDRPIRVHSQIY-EPDYvvvldptLLKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  76 ADkgykgFRGGVKEGGVIVVepNLVHPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAyMSKCIDLDKLKDTM 155
Cdd:TIGR02175  81 VN-----VTAGLKEDGILIV--NTKKDPEELRKELKVYTVDATKIALVVLGRPIVNTPMLGAFAK-VTGLVSLESLEKAI 152

                         170       180
                  ....*....|....*....|....*
gi 1184126351 156 LHMVPPKTRDANAKAFDLGIKYASE 180
Cdd:TIGR02175 153 EESFPGKLAEANAKAVERAYEEVKV 177
 
Name Accession Description Interval E-value
oorC PRK08441
2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
 1-183 1.51e-124

2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed


Pssm-ID: 181425 [Multi-domain]  Cd Length: 183  Bit Score: 348.26  E-value: 1.51e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGY 80
Cdd:PRK08441    1 MRAQLRFTGVGGQGVLLAGEILAEAKIKAGGYGVKASTYTSQVRGGPTKVDIILDDKEILYPYANEGEIDFMLSTAQISY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDKLKDTMLHMVP 160
Cdd:PRK08441   81 NQFKSGVKEGGIIVVEPNLVKPTEEDKKKWQIYEIPIITIAKDEVGNVITQSVVALAIAVEMTKCVDEDIVKDTMLSKVP 160

                         170       180
                  ....*....|....*....|...
gi 1184126351 161 PKTRDANAKAFDLGIKYASEAKP 183
Cdd:PRK08441  161 AKVAEANKKAFELGKKYALEALK 183
PorG COG1014
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma ...
 1-183 2.89e-40

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440638 [Multi-domain]  Cd Length: 424  Bit Score: 140.98  E-value: 2.89e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAveGEVDFMLSTADKGY 80
Cdd:COG1014     3 MDLEIRIAGVGGQGVVTAGKILAKAAMREGYYVQGYPSYGSEQRGGPVVSHVRISDEPIRSPLI--DEADVLIALDPEEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDY-------KKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKcIDLDKLKD 153
Cdd:COG1014    81 DRVLDGLKPGGVLIVNSSLVPPEVWRLpqealerKDIRVYVIDATKIAKELLGNARVANTVMLGALAALLG-LPLEALEE 159

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1184126351 154 TMLHMV---PPKTRDANAKAFDLGIKYASEAKP 183
Cdd:COG1014   160 AIEETFgkkGEKVVELNLKAFEAGYEAAKEVFA 192
POR pfam01558
Pyruvate ferredoxin/flavodoxin oxidoreductase; This family includes a region of the large ...
 11-174 9.62e-38

Pyruvate ferredoxin/flavodoxin oxidoreductase; This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganizms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.


Pssm-ID: 426323 [Multi-domain]  Cd Length: 172  Bit Score: 127.80  E-value: 9.62e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  11 GGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILfPYAVEGEVDFMLSTADKGYKGFRGGVKEG 90
Cdd:pfam01558   1 GGQGVVTAGKILAKAAARAGYYVQATPEYGSEIRGGPVVSHVRISDEPIV-PAIPVGEADLLVALDPETLDRHLDGLKPG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  91 GVIVVEPNLVHPESEDYKKW------KVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKcIDLDKLKDTMLHMVP--PK 162
Cdd:pfam01558  80 GIIIYNSSEVPPELLEKDLPayprlaRVYGVPATEIAKEAGGNSRAANTVMLGALAALLG-LPLEALEEAIKKRFPgkAK 158

                         170
                  ....*....|..
gi 1184126351 163 TRDANAKAFDLG 174
Cdd:pfam01558 159 VIELNLKAFRAG 170
PRK08537 PRK08537
2-oxoacid:ferredoxin oxidoreductase subunit gamma;
1-177 7.46e-31

2-oxoacid:ferredoxin oxidoreductase subunit gamma;


Pssm-ID: 181462 [Multi-domain]  Cd Length: 177  Bit Score: 110.53  E-value: 7.46e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAA-IKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGevDFMLSTADKG 79
Cdd:PRK08537    1 MRKEIRISGFGGQGIILAGVILGRAAaLYDGKYAVQTQSYGPEARGGASKSEVVISDEEIDYPKVISP--DILVAMSQEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  80 YKGFRGGVKEGGVIVVEPNLV-HPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDKLKDTMLHM 158
Cdd:PRK08537   79 YDKYLDDLKEGGTVIVDPDLVpIREIEYEKKVKVYKVPFTEIAEEEIGLSIVANIVMLGALTKLTGIVSKEAIEKAILDS 158

                         170
                  ....*....|....*....
gi 1184126351 159 VPPKTRDANAKAFDLGIKY 177
Cdd:PRK08537  159 VPKGTEEKNLMAFEKGYEL 177
PRK08338 PRK08338
2-oxoacid:ferredoxin oxidoreductase subunit gamma;
4-176 1.27e-23

2-oxoacid:ferredoxin oxidoreductase subunit gamma;


Pssm-ID: 181394 [Multi-domain]  Cd Length: 170  Bit Score: 91.53  E-value: 1.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   4 QLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEIlfpYAV-EGEVDFMLSTADKGYKG 82
Cdd:PRK08338    2 QIRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSASRGGHSIADVIISKEPI---YDVmVTKADVLVALHQLGYET 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  83 FRGGVKEGGVIVVEPNLVHPESEdykkwkVFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDKLKDTMLHMVPPK 162
Cdd:PRK08338   79 AKSSLKEDGLLIIDTDLVKPDRD------YIGAPFTRIAEETTGLALTVNMVALGYLVAKTGVVKKESVEEAIRRRVPKG 152

                         170
                  ....*....|....
gi 1184126351 163 TRDANAKAFDLGIK 176
Cdd:PRK08338  153 TEEINIKAFRKGYE 166
PRK06853 PRK06853
indolepyruvate oxidoreductase subunit beta; Reviewed
 1-181 4.03e-21

indolepyruvate oxidoreductase subunit beta; Reviewed


Pssm-ID: 180732 [Multi-domain]  Cd Length: 197  Bit Score: 85.69  E-value: 4.03e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTY-TSQvRGGPTKVDIIIDDkEILFPYAVEGEVDFMLS-TADK 78
Cdd:PRK06853    2 MKTNILIVGVGGQGILLASKILGEAALAAGYDVKVSEVHgMSQ-RGGSVVSHVRFGD-EVYSPLIPEGKADLLLAfEPLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  79 GYKGFRgGVKEGGVIVV-----EPNLVHPESEDY------------KKWKVFEIPIITIAKdEVGNVATQSVVAL-AIAA 140
Cdd:PRK06853   80 ALRYLP-YLKKGGKVVVntqpiVPVPVSLGLAKYpedeeileelkkLGIKVYVIDAEKIAK-EAGNIKAANVVLLgALAK 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1184126351 141 YMSkcIDLDKLKDTMLHMVPPKTRDANAKAFDLGIKYASEA 181
Cdd:PRK06853  158 FLP--IDEETLEEAIKERVPPKFVEVNLKAFEAGREAAEKL 196
PorC_KorC TIGR02175
2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; A number ...
 3-180 4.13e-18

2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family; A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins (H. pylori) used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.


Pssm-ID: 274014 [Multi-domain]  Cd Length: 177  Bit Score: 77.39  E-value: 4.13e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   3 YQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEgEVDF-------MLST 75
Cdd:TIGR02175   2 IEIRFHGRGGQGAVTASQLLAEAAFLEGKYAQAFPEFGAERRGAPVRAFLRISDRPIRVHSQIY-EPDYvvvldptLLKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  76 ADkgykgFRGGVKEGGVIVVepNLVHPESEDYKKWKVFEIPIITIAKDEVGNVATQSVVALAIAAyMSKCIDLDKLKDTM 155
Cdd:TIGR02175  81 VN-----VTAGLKEDGILIV--NTKKDPEELRKELKVYTVDATKIALVVLGRPIVNTPMLGAFAK-VTGLVSLESLEKAI 152

                         170       180
                  ....*....|....*....|....*
gi 1184126351 156 LHMVPPKTRDANAKAFDLGIKYASE 180
Cdd:TIGR02175 153 EESFPGKLAEANAKAVERAYEEVKV 177
PRK06274 PRK06274
indolepyruvate oxidoreductase subunit beta;
1-179 2.16e-13

indolepyruvate oxidoreductase subunit beta;


Pssm-ID: 235765 [Multi-domain]  Cd Length: 197  Bit Score: 65.45  E-value: 2.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDkEILFPYAVEGEVDFMLSTADKGY 80
Cdd:PRK06274    1 MNFNLIIAGVGGQGVLLASRILANAAMNEGFHVRTAETLGMSQREGSVISHLRFGD-EISSPLIPEGQADLLLALEPAEV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  81 KGFRGGVKEGGVIVVEPNLVHPESEDYKKWKVFEIPIITIAK--------------DEVGNVATQSVVALAIAAYMSKC- 145
Cdd:PRK06274   80 ARNLHFLKKGGKIIVNAYAIHPATTVGSEKYDPEKEIKFAKEkicdvicidftklaDEIGNPRSLNVIMLGAAFGAGLLp 159

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1184126351 146 IDLDKLKDTMLHMVPPKTRDANAKAFDLGIKYAS 179
Cdd:PRK06274  160 LSKESVLETIEAELPEKLREINLAAFELGIELIS 193
PRK08534 PRK08534
pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
 1-170 1.83e-11

pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed


Pssm-ID: 181460 [Multi-domain]  Cd Length: 181  Bit Score: 59.67  E-value: 1.83e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   1 MKyQLRFGGEGGQGVITAGEILAEAAIKEGR--SAFKAstYTSQVRGGPTKVDIIIDDKEILFPYAVEgEVDF------- 71
Cdd:PRK08534    1 MI-EIRFHGRGGQGAVTAAEILAKAAFEDGKfsQAFPF--FGVERRGAPVMAFTRIDDKPIRLRSQIY-EPDYvivqdpt 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  72 MLSTADkgykgFRGGVKEGGVIVVEpNLVHPESEDYK-KWKVFEIPIITIAKDEVGN--VATQSVVALAIAaymSKCIDL 148
Cdd:PRK08534   77 LLDSVD-----VTSGLKKDGIIIIN-TTKDPEDLKYDtKAKVYTIDATKIALDVLGVpiVNTTMLGAFAGA---TGEVSL 147

                         170       180
                  ....*....|....*....|..
gi 1184126351 149 DKLKDTMLHMVPPKTRDANAKA 170
Cdd:PRK08534  148 ESLKKAILERFPGKLGEKNAEA 169
IOR_beta TIGR03334
indolepyruvate ferredoxin oxidoreductase, beta subunit; This model represents the beta subunit ...
 3-176 1.98e-11

indolepyruvate ferredoxin oxidoreductase, beta subunit; This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.


Pssm-ID: 274525 [Multi-domain]  Cd Length: 189  Bit Score: 59.79  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   3 YQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDdkEILFPYAVEGEVDFMLSTADKGYKG 82
Cdd:TIGR03334   1 YNIYITGVGGQGIILASVIIGEAALKAGLPVRAAETHGMAQRGGSVINHIRIG--EVYGSMIPEGGADLLLAFEPLEALR 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  83 FRGGVKEGGVIVVEPNLV-----------HPESEDYKKWkVFEIPIITIAKD------EVGNVATQSVVAL-AIAAYMSK 144
Cdd:TIGR03334  79 YLPYLSEGGEVILNTSPIppvtvtrglhpYPPLDEILST-LEERAGSVRAFNaeeialEAGNILTLNVVMLgAASATPGF 157

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1184126351 145 CIDLDKLKDTMLHMVPPKTRDANAKAFDLGIK 176
Cdd:TIGR03334 158 PLEEESLLESMRDSVPSKTIDVNLRAFELGFG 189
PRK14029 PRK14029
pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
 4-170 6.39e-10

pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional


Pssm-ID: 172523 [Multi-domain]  Cd Length: 185  Bit Score: 55.80  E-value: 6.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351   4 QLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAV-EGEVDFMLSTADKGYKG 82
Cdd:PRK14029    3 EIRFHGRGGQGAVTAANILAEAAFLEGKYVQAFPFFGVERRGAPVTAFTRIDEKPIRIKTQIyEPDVVVVLDPSLLDTVD 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184126351  83 FRGGVKEGGVIVVEPNLVHPESEDYKKWKVFEIPII---TIAKDEVGNVATQSVVaLAIAAYMSKCIDLDKLKDTMLHMV 159
Cdd:PRK14029   83 VTAGLKDGGIVIVNTEKSKEEVLEKLKKKPKKLALVdatTIALEILGLPITNTAI-LGAVAKATGLVKIESVEEAIKDTF 161

                         170
                  ....*....|.
gi 1184126351 160 PPKTRDANAKA 170
Cdd:PRK14029  162 SGELGEKNAKA 172
PRK14028 PRK14028
pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
 1-59 8.33e-05

pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional


Pssm-ID: 172522 [Multi-domain]  Cd Length: 312  Bit Score: 41.91  E-value: 8.33e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1184126351   1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRSAFKASTYTSQVRGGPTKVDIIIDDKEI 59
Cdd:PRK14028    1 MRIETVWLGRGGQGIVTATYIIANAAVIDGFYAIANPEFGAERRGAPVKAFLTISKNPI 59
PRK09193 PRK09193
indolepyruvate ferredoxin oxidoreductase; Validated
 3-52 4.38e-03

indolepyruvate ferredoxin oxidoreductase; Validated


Pssm-ID: 236404 [Multi-domain]  Cd Length: 1165  Bit Score: 37.12  E-value: 4.38e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1184126351    3 YQLRFGGEGGQGVITAGEILAEAAIKEGRS---------AFKASTYTSQVRGGPTKVDI 52
Cdd:PRK09193   728 YNILVTGVGGTGVVTIGALLGMAAHLEGKGvsvldmtglAQKGGAVVSHVRIAARPEDI 786
Cupin_1 pfam00190
Cupin; This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' ...
 58-101 6.03e-03

Cupin; This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.


Pssm-ID: 395138  Cd Length: 151  Bit Score: 35.77  E-value: 6.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1184126351  58 EILfpYAVEGEVDFMLSTADKGYKGFRGGVKEGGVIVVEPNLVH 101
Cdd:pfam00190  56 EIL--YVLQGRGRVGFVVPGNGNRVFHKVLREGDVFVVPQGLPH 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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