NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1153089151|gb|AQW47598|]
View 

polyisoprenoid-binding protein [Streptomyces hygroscopicus]

Protein Classification

YceI family protein( domain architecture ID 10006401)

YceI family protein is a bacterial lipocalin (BCN), a small protein widely conserved in Gram-negative and Gram-positive bacteria whose physiological role is unclear; may be binding polyisoprenoids

CATH:  2.40.128.110
SCOP:  4000920

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YceI COG2353
Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];
29-213 3.05e-62

Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];


:

Pssm-ID: 441920  Cd Length: 184  Bit Score: 192.06  E-value: 3.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  29 AVAVPDTGLAALTGEWIVDPAHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRRSRAEVLLSTASVQTGVEQRDDHL 108
Cdd:COG2353     7 LAALAALAAAAAAGTYTIDPAHSSVGFSVKHLGVSTVTGRFKKFSGTITFDPADPEAGSVEVTIDVASIDTGNAKRDKHL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151 109 MGRDFLDARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGyvtdpfGYQRAGFDGTTTINRSEWGLTY 188
Cdd:COG2353    87 RSADFFDVAKYPTATFVSTSVEATGDGTYEVTGDLTIKGVTKPVTLPVTLTG------AGDRAGFSATTTIDRSDFGIGY 160
                         170       180
                  ....*....|....*....|....*
gi 1153089151 189 NArlAEGGALVSEKVRLQFDIAAIR 213
Cdd:COG2353   161 GS--PLGGVLVGDEVEIEIDLEAVK 183
 
Name Accession Description Interval E-value
YceI COG2353
Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];
29-213 3.05e-62

Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];


Pssm-ID: 441920  Cd Length: 184  Bit Score: 192.06  E-value: 3.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  29 AVAVPDTGLAALTGEWIVDPAHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRRSRAEVLLSTASVQTGVEQRDDHL 108
Cdd:COG2353     7 LAALAALAAAAAAGTYTIDPAHSSVGFSVKHLGVSTVTGRFKKFSGTITFDPADPEAGSVEVTIDVASIDTGNAKRDKHL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151 109 MGRDFLDARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGyvtdpfGYQRAGFDGTTTINRSEWGLTY 188
Cdd:COG2353    87 RSADFFDVAKYPTATFVSTSVEATGDGTYEVTGDLTIKGVTKPVTLPVTLTG------AGDRAGFSATTTIDRSDFGIGY 160
                         170       180
                  ....*....|....*....|....*
gi 1153089151 189 NArlAEGGALVSEKVRLQFDIAAIR 213
Cdd:COG2353   161 GS--PLGGVLVGDEVEIEIDLEAVK 183
YceI smart00867
YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of ...
44-212 1.85e-52

YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.


Pssm-ID: 214870  Cd Length: 166  Bit Score: 166.40  E-value: 1.85e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151   44 WIVDP-AHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRrSRAEVLLSTASVQTGVEQRDDHLMGRDFLDARTYPHI 122
Cdd:smart00867   2 YTLDPaSHSSVGFTVKHLGVSTVTGRFNDFSGTLTLDPDDPA-SSVEVTIDTASLDTGNSGRDGHLRSADFFDVAKYPTA 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  123 RFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGYVTDPFGyqrAGFDGTTTINRSEWGLTYNArLAEGGALVSEK 202
Cdd:smart00867  81 TFVSTKVKATGEGTYKVTGDLTLHGVTKPVTLDVTLTGLGDDPLG---VGFSATTTIDRSDFGIGAGA-PKLGGVAVSDE 156
                          170
                   ....*....|
gi 1153089151  203 VRLQFDIAAI 212
Cdd:smart00867 157 VTVTFSLEAK 166
YceI pfam04264
YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of ...
82-209 4.02e-41

YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.


Pssm-ID: 461243  Cd Length: 118  Bit Score: 135.78  E-value: 4.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  82 DPRRSRaevLLSTASVQTGVEQRDDHLMGRDFLDARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGy 161
Cdd:pfam04264   4 DPAHSS---VIDLASIDTGNAKRDEHLRSADFFDVAKFPTATFVSTSVEAGGDGTYEVTGDLTIKGVTKPVTLPVTVTG- 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1153089151 162 vtdpfGYQRAGFDGTTTINRSEWGLTYNArlaeGGALVSEKVRLQFDI 209
Cdd:pfam04264  80 -----GGTRAGFSATTTIDRSDFGLGWNA----GGVLVGDEVEIEIDL 118
PRK03757 PRK03757
YceI family protein;
38-213 2.85e-34

YceI family protein;


Pssm-ID: 179642  Cd Length: 191  Bit Score: 120.80  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  38 AALTGEWIVDP--AHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRRSRAEVLLSTASVQTGVEQRDDHLMGRDFLD 115
Cdd:PRK03757   19 SAVAADYKIDTegQHAFINFKISHLGYSWLYGRFNDFDGTFSFDEKNPAASKVNVTINTTSVDTNHAERDKHLRSADFLN 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151 116 ARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGYVTDPFGYQRAGFDGTTTINRSEWGLTYNArlaeG 195
Cdd:PRK03757   99 VAKFPQATFTSTSVKKDGDGTLDITGDLTLNGVTKPVTIEAKLIGEGDDPWGGYRAGFEGTTTIKLKDFGIKTDL----G 174
                         170
                  ....*....|....*...
gi 1153089151 196 GAlvSEKVRLQFDIAAIR 213
Cdd:PRK03757  175 PA--SQEVELILSVEGVR 190
 
Name Accession Description Interval E-value
YceI COG2353
Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];
29-213 3.05e-62

Polyisoprenoid-binding periplasmic protein YceI [General function prediction only];


Pssm-ID: 441920  Cd Length: 184  Bit Score: 192.06  E-value: 3.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  29 AVAVPDTGLAALTGEWIVDPAHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRRSRAEVLLSTASVQTGVEQRDDHL 108
Cdd:COG2353     7 LAALAALAAAAAAGTYTIDPAHSSVGFSVKHLGVSTVTGRFKKFSGTITFDPADPEAGSVEVTIDVASIDTGNAKRDKHL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151 109 MGRDFLDARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGyvtdpfGYQRAGFDGTTTINRSEWGLTY 188
Cdd:COG2353    87 RSADFFDVAKYPTATFVSTSVEATGDGTYEVTGDLTIKGVTKPVTLPVTLTG------AGDRAGFSATTTIDRSDFGIGY 160
                         170       180
                  ....*....|....*....|....*
gi 1153089151 189 NArlAEGGALVSEKVRLQFDIAAIR 213
Cdd:COG2353   161 GS--PLGGVLVGDEVEIEIDLEAVK 183
YceI smart00867
YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of ...
44-212 1.85e-52

YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.


Pssm-ID: 214870  Cd Length: 166  Bit Score: 166.40  E-value: 1.85e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151   44 WIVDP-AHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRrSRAEVLLSTASVQTGVEQRDDHLMGRDFLDARTYPHI 122
Cdd:smart00867   2 YTLDPaSHSSVGFTVKHLGVSTVTGRFNDFSGTLTLDPDDPA-SSVEVTIDTASLDTGNSGRDGHLRSADFFDVAKYPTA 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  123 RFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGYVTDPFGyqrAGFDGTTTINRSEWGLTYNArLAEGGALVSEK 202
Cdd:smart00867  81 TFVSTKVKATGEGTYKVTGDLTLHGVTKPVTLDVTLTGLGDDPLG---VGFSATTTIDRSDFGIGAGA-PKLGGVAVSDE 156
                          170
                   ....*....|
gi 1153089151  203 VRLQFDIAAI 212
Cdd:smart00867 157 VTVTFSLEAK 166
YceI pfam04264
YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of ...
82-209 4.02e-41

YceI-like domain; E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.


Pssm-ID: 461243  Cd Length: 118  Bit Score: 135.78  E-value: 4.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  82 DPRRSRaevLLSTASVQTGVEQRDDHLMGRDFLDARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGy 161
Cdd:pfam04264   4 DPAHSS---VIDLASIDTGNAKRDEHLRSADFFDVAKFPTATFVSTSVEAGGDGTYEVTGDLTIKGVTKPVTLPVTVTG- 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1153089151 162 vtdpfGYQRAGFDGTTTINRSEWGLTYNArlaeGGALVSEKVRLQFDI 209
Cdd:pfam04264  80 -----GGTRAGFSATTTIDRSDFGLGWNA----GGVLVGDEVEIEIDL 118
PRK03757 PRK03757
YceI family protein;
38-213 2.85e-34

YceI family protein;


Pssm-ID: 179642  Cd Length: 191  Bit Score: 120.80  E-value: 2.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151  38 AALTGEWIVDP--AHSRIGFSVRHAMVSTVRGAFTEFESRLYFDGRDPRRSRAEVLLSTASVQTGVEQRDDHLMGRDFLD 115
Cdd:PRK03757   19 SAVAADYKIDTegQHAFINFKISHLGYSWLYGRFNDFDGTFSFDEKNPAASKVNVTINTTSVDTNHAERDKHLRSADFLN 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1153089151 116 ARTYPHIRFASTAVDVAGPDVYRMIGDLTIRDITRPVVLELTYIGYVTDPFGYQRAGFDGTTTINRSEWGLTYNArlaeG 195
Cdd:PRK03757   99 VAKFPQATFTSTSVKKDGDGTLDITGDLTLNGVTKPVTIEAKLIGEGDDPWGGYRAGFEGTTTIKLKDFGIKTDL----G 174
                         170
                  ....*....|....*...
gi 1153089151 196 GAlvSEKVRLQFDIAAIR 213
Cdd:PRK03757  175 PA--SQEVELILSVEGVR 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH