|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-766 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 1465.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 1 MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYT 80
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYCLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 81 IQYYGQSLEYTSEQILADKYTIWCGEQLWTGFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDKPKEVA 160
Cdd:PRK13700 81 IQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 161 RQMKRDGVASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNP 240
Cdd:PRK13700 161 RMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 241 LDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYL 320
Cdd:PRK13700 241 LDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTYL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 321 QNTPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISM 400
Cdd:PRK13700 321 RNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISM 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 401 WLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRA 480
Cdd:PRK13700 401 WLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 481 FFRSPSKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL 560
Cdd:PRK13700 481 FFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKLSL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 561 KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPDDAGSHAGeqpelasqpaPAEVTVSPAP 640
Cdd:PRK13700 561 KYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDVPEVASGEDVTQAE----------QPQQPQQPQQ 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 641 VKAPATTTMPAaepsprtaePPVLRVTtvplikpkaaaaastaSSAGNPAAAAGGTEQELAQQSAEQGQDMLPAGMNEDG 720
Cdd:PRK13700 631 PQQPQQPQQPV---------SPVINDK----------------KSDAGVNVPAGGIEQELKMKPEEEMEQQLPPGISESG 685
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1142877533 721 VIEDMQAYDAWADEQ---TQRDMQRREEVNINhSHRHDEQdDVEIGGNF 766
Cdd:PRK13700 686 EVVDMAAYEAWQQENhpdIQQQMQRREEVNIN-VHRERGE-DVEPGDDF 732
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
8-575 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 858.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 8 MTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFvNGCVYWWCTTLGPMRDIIRSQPVYTIqYYGQS 87
Cdd:TIGR02759 1 FTRGGQITFHNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTF-LGNIYYWEAQLFTLVGHIKTQEVFTP-WFGKT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 88 LEYTSEQILADKYTIWCGEQLWTGFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDkPKEVARQMKRDG 167
Cdd:TIGR02759 79 YTTYQAQILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLSS-PKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 168 VASDIKIGDLPILK-NSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCA 246
Cdd:TIGR02759 158 RASDIKIGGLPLIKfGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 247 AWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAA 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 327 NLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNG-EPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIA 405
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGrEPFSIRDW---ILNEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 406 IRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSP 485
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 486 SKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYKPR 565
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|
gi 1142877533 566 PKIAEGFIPR 575
Cdd:TIGR02759 555 PKICPPFIPR 564
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
174-561 |
1.33e-130 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 393.20 E-value: 1.33e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 174 IGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKE 253
Cdd:pfam10412 4 IAGVPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 254 CLTLPDFDNISNTLIP-MGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEK 332
Cdd:pfam10412 84 CKTPADFAAIAAALIPeDGGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 333 IEKTAISIRAVLTNYVKAIRYLQGiekNGEPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM 412
Cdd:pfam10412 164 AERTTASIRATLATNLRALRFLAP---DGERFSIREW---ITEEDPGGWLFITYRADQRAALRPLLSCWLDLAIRALLSL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 413 GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEF 492
Cdd:pfam10412 238 PPSRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAEL 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142877533 493 AAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALK 561
Cdd:pfam10412 318 CSDLLGDREVERMDESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-579 |
2.41e-79 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 260.30 E-value: 2.41e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 187 NFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVK---SYYDPSLDK--ILNPLD-SRCAAWDLWKECLTLPDF 260
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLTQLARGESVVVTDPKGDLAEltaGFRRRAGYDvyVFDPFDpERSHRWNPLDEIRDPADA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 261 DNISNTLIPM---GTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDtMLSIKIDKLRAYLQNTP---------AANL 328
Cdd:COG3505 81 QELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLADVYR-LLSEPEEELRELLEALPesphppvadTLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 329 VEEKIEKTAISIRAVLTNYVKAIRyLQGIEK--NGEPFTIRDWMRGvredrpNGWLFISSNADTHASLKPVISMWLSIAI 406
Cdd:COG3505 160 FLNAAEKTRSSVLSTLASALELLS-DPEVAAltSGSDFDLRDLIRE------KGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 407 RGLLAMGENRNR---RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFR 483
Cdd:COG3505 233 RALLRRAERSGRlprPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 484 SPSKEIAEFAAGEIGEKEILKASEQYSYGadpvrdGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYK 563
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRG------SRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 1142877533 564 PRPKIAEGFIPRTLDA 579
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
378-484 |
7.83e-29 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 112.31 E-value: 7.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 378 PNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM-GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQS 456
Cdd:cd01127 37 GELFLVIPDRDDSFAALRALFFNQLFRALTELASLsPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 1142877533 457 YAQLEDIYGVKPAATLFDVMNTRAFFRS 484
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
547-662 |
4.15e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.22 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 547 VTLPGPYPAVKLALKYKPRPKIAEGFIPRTLDA---RVDARLSALLEAREAEGSLARALFTPDAPASGPDDAGSHAGEQP 623
Cdd:NF040712 202 VPRLAREPADARPEEVEPAPAAEGAPATDSDPAeagTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPP 281
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1142877533 624 ELASQPAPAEV-TVSPAPVkAPATTTMPAAEPSPRTAEPP 662
Cdd:NF040712 282 APGAAETPEAAePPAPAPA-APAAPAAPEAEEPARPEPPP 320
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
564-662 |
9.53e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 38.98 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 564 PRPKIAegFIPRTLDARVDARLSALLEAREAEG-----SLARALFTPDAPASG---------PDDAGSHAGEQPELASQP 629
Cdd:NF040712 195 PLRPLA--TVPRLAREPADARPEEVEPAPAAEGapatdSDPAEAGTPDDLASArrrragveqPEDEPVGPGAAPAAEPDE 272
|
90 100 110
....*....|....*....|....*....|...
gi 1142877533 630 APAEVTVSPAPVKAPATTTMPAAEPSPRTAEPP 662
Cdd:NF040712 273 ATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAP 305
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-766 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 1465.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 1 MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYT 80
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYCLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 81 IQYYGQSLEYTSEQILADKYTIWCGEQLWTGFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDKPKEVA 160
Cdd:PRK13700 81 IQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 161 RQMKRDGVASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNP 240
Cdd:PRK13700 161 RMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 241 LDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYL 320
Cdd:PRK13700 241 LDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTYL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 321 QNTPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISM 400
Cdd:PRK13700 321 RNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISM 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 401 WLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRA 480
Cdd:PRK13700 401 WLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 481 FFRSPSKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL 560
Cdd:PRK13700 481 FFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKLSL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 561 KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPDDAGSHAGeqpelasqpaPAEVTVSPAP 640
Cdd:PRK13700 561 KYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDVPEVASGEDVTQAE----------QPQQPQQPQQ 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 641 VKAPATTTMPAaepsprtaePPVLRVTtvplikpkaaaaastaSSAGNPAAAAGGTEQELAQQSAEQGQDMLPAGMNEDG 720
Cdd:PRK13700 631 PQQPQQPQQPV---------SPVINDK----------------KSDAGVNVPAGGIEQELKMKPEEEMEQQLPPGISESG 685
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1142877533 721 VIEDMQAYDAWADEQ---TQRDMQRREEVNINhSHRHDEQdDVEIGGNF 766
Cdd:PRK13700 686 EVVDMAAYEAWQQENhpdIQQQMQRREEVNIN-VHRERGE-DVEPGDDF 732
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
8-575 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 858.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 8 MTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFvNGCVYWWCTTLGPMRDIIRSQPVYTIqYYGQS 87
Cdd:TIGR02759 1 FTRGGQITFHNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTF-LGNIYYWEAQLFTLVGHIKTQEVFTP-WFGKT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 88 LEYTSEQILADKYTIWCGEQLWTGFVFAAVVSLVICIVTFFIASWVLGRQGKQQSEDENTGGRQLSDkPKEVARQMKRDG 167
Cdd:TIGR02759 79 YTTYQAQILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLSS-PKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 168 VASDIKIGDLPILK-NSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCA 246
Cdd:TIGR02759 158 RASDIKIGGLPLIKfGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 247 AWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAA 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 327 NLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEKNG-EPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIA 405
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGrEPFSIRDW---ILNEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 406 IRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSP 485
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 486 SKEIAEFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYKPR 565
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|
gi 1142877533 566 PKIAEGFIPR 575
Cdd:TIGR02759 555 PKICPPFIPR 564
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
174-561 |
1.33e-130 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 393.20 E-value: 1.33e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 174 IGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKE 253
Cdd:pfam10412 4 IAGVPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 254 CLTLPDFDNISNTLIP-MGTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEK 332
Cdd:pfam10412 84 CKTPADFAAIAAALIPeDGGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 333 IEKTAISIRAVLTNYVKAIRYLQGiekNGEPFTIRDWmrgVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM 412
Cdd:pfam10412 164 AERTTASIRATLATNLRALRFLAP---DGERFSIREW---ITEEDPGGWLFITYRADQRAALRPLLSCWLDLAIRALLSL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 413 GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEF 492
Cdd:pfam10412 238 PPSRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAEL 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142877533 493 AAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALK 561
Cdd:pfam10412 318 CSDLLGDREVERMDESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-579 |
2.41e-79 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 260.30 E-value: 2.41e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 187 NFCLHGTVGSGKSEVIRRLLNYVRARGDMAIIYDRSCEFVK---SYYDPSLDK--ILNPLD-SRCAAWDLWKECLTLPDF 260
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLTQLARGESVVVTDPKGDLAEltaGFRRRAGYDvyVFDPFDpERSHRWNPLDEIRDPADA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 261 DNISNTLIPM---GTKEDPFWQGSGRTIFAEGAYLMREDDDRSYEKLVDtMLSIKIDKLRAYLQNTP---------AANL 328
Cdd:COG3505 81 QELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLADVYR-LLSEPEEELRELLEALPesphppvadTLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 329 VEEKIEKTAISIRAVLTNYVKAIRyLQGIEK--NGEPFTIRDWMRGvredrpNGWLFISSNADTHASLKPVISMWLSIAI 406
Cdd:COG3505 160 FLNAAEKTRSSVLSTLASALELLS-DPEVAAltSGSDFDLRDLIRE------KGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 407 RGLLAMGENRNR---RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFR 483
Cdd:COG3505 233 RALLRRAERSGRlprPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 484 SPSKEIAEFAAGEIGEKEILKASEQYSYGadpvrdGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLALKYK 563
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRG------SRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 1142877533 564 PRPKIAEGFIPRTLDA 579
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TraD_N |
pfam12615 |
F sex factor protein N terminal; This domain family is found in bacteria, and is typically ... |
32-128 |
3.60e-48 |
|
F sex factor protein N terminal; This domain family is found in bacteria, and is typically between 96 and 107 amino acids in length. The family is found in association with pfam10412. TraD is a cytoplasmic membrane protein with possible DNA binding domains. It is part of the bacterial F sex factor complex.
Pssm-ID: 432671 [Multi-domain] Cd Length: 97 Bit Score: 164.92 E-value: 3.60e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 32 VLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMRDIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTG 111
Cdd:pfam12615 1 VLFILFLVLTGLWLWCRLSQQTFVNGLYYWWCTTYGQMKDLIGEQHVYTIWYYGQTYGINFYQILFDKYTIWNAEQFWEF 80
|
90
....*....|....*..
gi 1142877533 112 FVFAAVVSLVICIVTFF 128
Cdd:pfam12615 81 LILSALAALVICFVTFF 97
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
378-484 |
7.83e-29 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 112.31 E-value: 7.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 378 PNGWLFISSNADTHASLKPVISMWLSIAIRGLLAM-GENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQS 456
Cdd:cd01127 37 GELFLVIPDRDDSFAALRALFFNQLFRALTELASLsPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 1142877533 457 YAQLEDIYGVKPAATLFDVMNTRAFFRS 484
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
419-541 |
9.69e-19 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 82.70 E-value: 9.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 419 RVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIAEFAAGEIG 498
Cdd:pfam12696 1 PVLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1142877533 499 EKEILKASEQYSYGADPVRDGVS--TGKEKEREtLVSYSDIQTLP 541
Cdd:pfam12696 81 KYTVVSTTTSSSSSGSGGSGSSSssSSQLVGRP-LLTPDELRRLP 124
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
195-581 |
1.85e-07 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 54.33 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 195 GSGKSE--VIRRLLNYvrarGDMAIIYDRSCE----------------FVKSYYDPSLDKILNPLDsrcaaW-DLWKECL 255
Cdd:pfam02534 54 GSGKGVgvVIPNLLVW----KGSIVVLDPKGElweltsgirekqgrkvFVLEPFNPKTSDRYNPLD-----YiDRGSEQE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 256 TlPDFDNISNTLIP-MGTKEDPFWQGSGRTIF-AEGAYLMREDDDRSYE---KLVDTMLS---IKIDKLRAYLQNT---- 323
Cdd:pfam02534 125 T-EDILKVASLIMPgKGGGRDDFFNNTARQLLvALIALVLRSKPTRTIGqtlRFVRNMLSepnLIENKELAVLLNEldgs 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 324 ---PAANLVEEKIEKTAISIRAVLTNYVKAIR--YLQGIEKN--GEPFTIRDWMRGvREDrpngwLFISSNAD---THAS 393
Cdd:pfam02534 204 hhdRVGDNLRFYVNKTDETRSSVIGTAVSELAlyADPEVRNAtsGSDFDLRDLRRD-KTS-----VYVILNPKdltVVSP 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 394 LKPVISMWLSIAIRGLLAMGENRNRRVWIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLF 473
Cdd:pfam02534 278 LLRVFFQMVVELLYLKLPNGDGRPKEVLFLLDEFPSLGKLEILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSIL 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 474 DVMNTRAFFRSPSK-EIAEFAAGEIGEKEIlkASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGp 552
Cdd:pfam02534 358 SNHAVVICFAASNDeETAKYISKLLGKTTV--EVESSSKSTDAKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKG- 434
|
410 420 430
....*....|....*....|....*....|.
gi 1142877533 553 YPAVKL--ALKYKPRPKIAEGFIPRTLDARV 581
Cdd:pfam02534 435 QPPIKCkkALYFKDEDFKAELNKPTALTASV 465
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
581-662 |
2.53e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.88 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 581 VDARLSALLEAREAEGSLA--RALFTPDAPASGPDDAGSHAGEQPELASQPAPAEVTVSPAPVKAPATTTMPAAEPSPRT 658
Cdd:PRK12270 25 VDPSWREFFADYGPGSTAAptAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
|
....
gi 1142877533 659 AEPP 662
Cdd:PRK12270 105 AAAP 108
|
|
| PRK13880 |
PRK13880 |
conjugal transfer coupling protein TraG; Provisional |
364-471 |
3.85e-04 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237540 Cd Length: 636 Bit Score: 43.96 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 364 FTIRDWMRgvrEDRPNGwLFISSNADTHASLKPVISMWLSIAIRgLLA--MGENRNR-------RVWIFADELPTLHKLp 434
Cdd:PRK13880 385 FRIKDLMH---HDDPVS-LYIVTQPNDKARLRPLVRVMVNMIVR-LLAdkMDFENGRpvahykhRLLMMLDEFPSLGKL- 458
|
90 100 110
....*....|....*....|....*....|....*..
gi 1142877533 435 dlvEILPEARKFGGCYvfGIQSYAQLEDIYGVKPAAT 471
Cdd:PRK13880 459 ---EILQESLAFVAGY--GIKCYLICQDINQLKSRET 490
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
607-670 |
4.02e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 4.02e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142877533 607 APASGPDDAGSHAGEQPELASQPAPAEvTVSPAPVKAPATTTMPAAEPSPRTAEP-PVLRVTTVP 670
Cdd:PRK14950 384 APSTRPKAAAAANIPPKEPVRETATPP-PVPPRPVAPPVPHTPESAPKLTRAAIPvDEKPKYTPP 447
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
547-662 |
4.15e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.22 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 547 VTLPGPYPAVKLALKYKPRPKIAEGFIPRTLDA---RVDARLSALLEAREAEGSLARALFTPDAPASGPDDAGSHAGEQP 623
Cdd:NF040712 202 VPRLAREPADARPEEVEPAPAAEGAPATDSDPAeagTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPP 281
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1142877533 624 ELASQPAPAEV-TVSPAPVkAPATTTMPAAEPSPRTAEPP 662
Cdd:NF040712 282 APGAAETPEAAePPAPAPA-APAAPAAPEAEEPARPEPPP 320
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
579-662 |
4.58e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.84 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 579 ARVDARLSALlEAREAEGSLARALFTPDAPASGPDDAGShageQPELASQPAPAEVTVSPAPVKAPAtttmPAAEPSPRT 658
Cdd:COG5373 24 ARLRRRVEEL-EAELAEAAEAASAPAEPEPEAAAAATAA----APEAAPAPVPEAPAAPPAAAEAPA----PAAAAPPAE 94
|
....
gi 1142877533 659 AEPP 662
Cdd:COG5373 95 AEPA 98
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
541-667 |
6.39e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 541 PDLSCYVTLPGPYPAVKLALKYKPRPKI-AEGFIPRT-LDARVDARLSAlleareAEGSLARALFTPDAPASGPDDAGSH 618
Cdd:PHA03247 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDApPQSARPRApVDDRGDPRGPA------PPSPLPPDTHAPDPPPPSPSPAANE 2637
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 619 AGEqPELASQPAPAEVTVSPAPVKA-----------PATTTMPAAEPSPRTAEPPVLRVT 667
Cdd:PHA03247 2638 PDP-HPPPTVPPPERPRDDPAPGRVsrprrarrlgrAAQASSPPQRPRRRAARPTVGSLT 2696
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
567-678 |
3.89e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.60 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 567 KIAEGFIPRTLDARVDARLSALLEAreaegsLARALFTPDAPASGPDDAGSHAGEQPELASQPAPAEVTVSPAPVKAPAT 646
Cdd:COG3266 226 LAALALLAAGAAEVLTARLVLLLLI------IGSALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAV 299
|
90 100 110
....*....|....*....|....*....|...
gi 1142877533 647 TTmPAAEPSPRTAEPPVLRVT-TVPLIKPKAAA 678
Cdd:COG3266 300 AL-PAAPAAAAAAAAPAEAAApQPTAAKPVVTE 331
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
585-670 |
4.39e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 585 LSALLEAREAEGSLARALFTPDAPASGpddagshaGEQPELASQPAPAEVTVSPAPVKAPATTTMPAAEPSPRTAEPPVL 664
Cdd:PRK07764 374 LLARLERLERRLGVAGGAGAPAAAAPS--------AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445
|
....*.
gi 1142877533 665 RVTTVP 670
Cdd:PRK07764 446 GNAPAG 451
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
592-668 |
4.78e-03 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 39.94 E-value: 4.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142877533 592 REAEGSLARALfTPDAPASGPDDAGSHAGEQPElASQPAPAEVTVSPAPVKAPATTTMPAAEPSPRTAEPPVLRVTT 668
Cdd:PHA03291 180 GSADGSCDPAL-PLSAPRLGPADVFVPATPRPT-PRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAE 254
|
|
| PDHac_trf_long |
TIGR01348 |
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
604-657 |
4.86e-03 |
|
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase]
Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 40.24 E-value: 4.86e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1142877533 604 TPDAPASGPDDAGSHAGEQPELASQPAPAEVTvSPAPVKAPAT--TTMPAAEPSPR 657
Cdd:TIGR01348 198 TAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ-APAPQQAGTQnpAKVDHAAPAVR 252
|
|
| FimV |
COG3170 |
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
585-660 |
6.20e-03 |
|
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 39.78 E-value: 6.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142877533 585 LSALLEAREAEGSLAR---ALFTPDAPASgpddagshAGEQPELASQPAPAevtvspAPVKAPATTTMPAAEPSPRTAE 660
Cdd:COG3170 83 LDFLVEVNWPSGRLVReytLLLDPPAYAA--------AAAAPAAAPAPAPA------APAAAAAAADQPAAEAAPAASG 147
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
550-662 |
7.33e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.86 E-value: 7.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 550 PGPYPAvklalkykPRPKIAEGFIPRTLDARVDARLSALLEArEAEGSLARALFTPDAPASGPDDAGSHAGEQPELASQP 629
Cdd:PRK12323 399 PAAPPA--------APAAAPAAAAAARAVAAAPARRSPAPEA-LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469
|
90 100 110
....*....|....*....|....*....|....
gi 1142877533 630 APAEVTVSPAPVK-APATTTMPAAEPSPRTAEPP 662
Cdd:PRK12323 470 RPVAAAAAAAPARaAPAAAPAPADDDPPPWEELP 503
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
564-662 |
9.53e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 38.98 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142877533 564 PRPKIAegFIPRTLDARVDARLSALLEAREAEG-----SLARALFTPDAPASG---------PDDAGSHAGEQPELASQP 629
Cdd:NF040712 195 PLRPLA--TVPRLAREPADARPEEVEPAPAAEGapatdSDPAEAGTPDDLASArrrragveqPEDEPVGPGAAPAAEPDE 272
|
90 100 110
....*....|....*....|....*....|...
gi 1142877533 630 APAEVTVSPAPVKAPATTTMPAAEPSPRTAEPP 662
Cdd:NF040712 273 ATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAP 305
|
|
| |
