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Conserved domains on  [gi|1114261193|gb|APL04565|]
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hypothetical protein RG56_15190 [Escherichia coli]

Protein Classification

YggT family protein( domain architecture ID 10492032)

YggT family protein similar to Escherichia coli membrane protein YggT

PubMed:  19966467

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 2.46e-16

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 70.15  E-value: 2.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114261193  92 IAGLLILLKTIGLLIFWVLLVMAIMSWVSQ-GRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1114261193 171 EVLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 5.59e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


:

Pssm-ID: 460533  Cd Length: 71  Bit Score: 55.96  E-value: 5.59e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1114261193   9 STVIELYTMVLLLRIWMQW-AHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 2.46e-16

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 70.15  E-value: 2.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114261193  92 IAGLLILLKTIGLLIFWVLLVMAIMSWVSQ-GRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1114261193 171 EVLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 5.59e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 55.96  E-value: 5.59e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1114261193   9 STVIELYTMVLLLRIWMQW-AHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 101-167 3.64e-09

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 50.95  E-value: 3.64e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1114261193 101 TIGLLIFWVLLVMAIMSWVSQG--RSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINM 167
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRI 70
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-80 5.10e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 50.89  E-value: 5.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114261193   1 MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 92-174 2.46e-16

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 70.15  E-value: 2.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114261193  92 IAGLLILLKTIGLLIFWVLLVMAIMSWVSQ-GRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINMGVA 170
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                  ....
gi 1114261193 171 EVLQ 174
Cdd:COG0762    81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 9-78 5.59e-11

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 55.96  E-value: 5.59e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1114261193   9 STVIELYTMVLLLRIWMQW-AHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAI 78
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 101-167 3.64e-09

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 50.95  E-value: 3.64e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1114261193 101 TIGLLIFWVLLVMAIMSWVSQG--RSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVLLLYVINM 167
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRI 70
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-80 5.10e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 50.89  E-value: 5.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1114261193   1 MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVTQPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVL 80
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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