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Conserved domains on  [gi|1078193712|gb|AOV84562|]
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cytochrome b (mitochondrion) [Physeter catodon]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 721.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 721.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 3.74e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 360.64  E-value: 3.74e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICR 71
Cdd:COG1290     1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  72 DVNYGWTIRYLHANGASMFFICLYTHMGRGLYYGSY-----IfqeTWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVI 146
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 147 TNLLSAIPYIGTTLVEWVWGGFSVDKATLTRFFTLH-FILPFITLTLTMVHLLFLHETGSNNPTGI----PSNMDKIPFH 221
Cdd:COG1290   158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFH 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 222 PYHTIKDTMGALLLILSLLTLTLFAPDllGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVP--NKLGGVLALLLSIL 299
Cdd:COG1290   238 PYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1078193712 300 ILVFIPMLHTAKQRSMMFRPFSQFLFWTLIMDLLTLTWIGGQPVehPYVTVGQLASILYFLLILILMPTASLIE 373
Cdd:COG1290   316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.58e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 289.27  E-value: 7.58e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  89 MFFICLYTHMGRGLYYGSYI--FQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1078193712 167 GFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 5.25e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 271.56  E-value: 5.25e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFFICLYTH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  98 MGRGLYYG--SYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1078193712 176 TRFFTLHFILPFITLTLTMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-329 9.50e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 9.50e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 258 PANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMF-RPFSQ--FLFWTLI 329
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATtvFLFGTVV 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 721.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 658.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00119  162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00119  242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00119  322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 644.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00131  321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 632.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00074    2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00074   82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00074  162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00074  242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLKW 379
Cdd:MTH00074  322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 4-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 600.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQLAS 355
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISS 352
CYTB MTH00156
cytochrome b; Provisional
 11-353 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 579.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  11 MKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  91 FICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 171 DKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLTLFAPDLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 251 GDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQFLFWTLIM 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340
                  ....*....|....*....|...
gi 1078193712 331 DLLTLTWIGGQPVEHPYVTVGQL 353
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQI 343
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 575.50  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLL 377
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 566.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  81 YLHANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 161 VEWVWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLL 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 241 TLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPF 320
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1078193712 321 SQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLAS 355
Cdd:MTH00145  322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFT 356
CYTB MTH00016
cytochrome b; Validated
 4-352 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 539.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00016  165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00016  245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                         330       340
                  ....*....|....*....|....*....
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQ 352
Cdd:MTH00016  325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353
CYTB MTH00053
cytochrome b; Provisional
 4-378 3.75e-179

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 502.70  E-value: 3.75e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLK 378
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 4-378 6.68e-177

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 496.92  E-value: 6.68e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILMPTASLIENKLLK 378
Cdd:MTH00022  323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 4-378 5.42e-166

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 469.40  E-value: 5.42e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   4 IRKSHPLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  84 ANGASMFFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEW 163
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 164 VWGGFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLT 243
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 244 LFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQF 323
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 324 LFWTLIMDLLTLTWIGGQPVEHPYVTVGQLASILYFLLILILmPTASLIENKLLK 378
Cdd:MTH00224  325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIIS-PAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 16-374 1.31e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.97  E-value: 1.31e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  16 NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFFICLY 95
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  96 THMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVDKATL 175
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 176 TRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLTLFA--PDLLGDP 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 254 DNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQFLFWTLIMDLL 333
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1078193712 334 TLTWIGGQPV-EHPYVTVGQLASILYFLLILILMPTASLIEN 374
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-373 3.74e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 360.64  E-value: 3.74e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   1 MTNIRKSHPLMKIIN---------NAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICR 71
Cdd:COG1290     1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  72 DVNYGWTIRYLHANGASMFFICLYTHMGRGLYYGSY-----IfqeTWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVI 146
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVI 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 147 TNLLSAIPYIGTTLVEWVWGGFSVDKATLTRFFTLH-FILPFITLTLTMVHLLFLHETGSNNPTGI----PSNMDKIPFH 221
Cdd:COG1290   158 TGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFH 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 222 PYHTIKDTMGALLLILSLLTLTLFAPDllGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVP--NKLGGVLALLLSIL 299
Cdd:COG1290   238 PYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAIL 315

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1078193712 300 ILVFIPMLHTAKQRSMMFRPFSQFLFWTLIMDLLTLTWIGGQPVehPYVTVGQLASILYFLLILILMPTASLIE 373
Cdd:COG1290   316 VLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 12-355 7.25e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 338.45  E-value: 7.25e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  12 KIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  92 ICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVD 171
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 172 KATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGaLLLILSLLTLTLFAPDLLG 251
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 252 DPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLhtaKQRSMMFRPFSQFLFWTLIMD 331
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                         330       340
                  ....*....|....*....|....
gi 1078193712 332 LLTLTWIGGQPVEHPYVTVGQLAS 355
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFS 340
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.58e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 289.27  E-value: 7.58e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712   9 PLMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  89 MFFICLYTHMGRGLYYGSYI--FQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1078193712 167 GFSVDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 10-355 6.71e-92

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 279.56  E-value: 6.71e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  10 LMKIINNAFIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASM 89
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  90 FFICLYTHMGRGLYYGSYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFS 169
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 170 VDKATLTRFFTLHFILPFITLTLTMVHLLFLHETGSNNPTGIPSNM-DKIPFHPYHTIKDTMGALLLILSLLTLTLFAPD 248
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 249 LLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVlALLLSILILVFIPmlhtAKQRSMMFRPFSQFLFWTL 328
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-VLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*..
gi 1078193712 329 IMDLLTLTWIGGQPVEHPYVTVGQLAS 355
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFS 342
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 5.25e-91

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 271.56  E-value: 5.25e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  18 FIDLPTPSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFFICLYTH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  98 MGRGLYYG--SYIFQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1078193712 176 TRFFTLHFILPFITLTLTMVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 1.46e-47

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.58  E-value: 1.46e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 207 NPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLTLFAPDLLGDPDNYTPANPLNTPTHIKPEWYFLFAYAILRSVPN 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078193712 287 KLGGVLALLLSILILVFIPMLHTAKQRSmMFRPFSQFLFWTLIMDLLTLTWIGGQPVEHPYVTVGQLA 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 1.65e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 143.54  E-value: 1.65e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  88 SMFFICLYTHMGRGLYYGSYIF--QETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 166 GGFSVDKATLTRFFTLHF-ILPFITLTLTMVHLLFLHETGSNNPTGIPSNMDKIPFHPYHTIKDTMGALLLILSLLTLTL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1078193712 245 FAPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 3.40e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 139.08  E-value: 3.40e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  33 FGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFFICLYTHMGRGLYYGSYI--FQ 110
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 111 ETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVDKATLTRFFTLH-FILPFIT 189
Cdd:PRK03735  124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 1078193712 190 LTLTMVHLLFLHETGSNNP 208
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-355 3.79e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 132.22  E-value: 3.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 258 PANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFRPFSQFLFWTLIMDLLTLTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*...
gi 1078193712 338 IGGQPVEHPYVTVGQLAS 355
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIAT 98
petB CHL00070
cytochrome b6
 24-208 8.90e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.53  E-value: 8.90e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712  24 PSNISSWWNFGSLLGLCLIMQILTGLFLAMHYTPDTTTAFSSITHICRDVNYGWTIRYLHANGASMFFICLYTHMGRGLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193712 104 YGSYI--FQETWNVGMMLLITVMATAFVGYVLPWGQMSFWAATVITNLLSAIPYIGTTLVEWVWGGFSVDKATLTRFFTL 181
Cdd:CHL00070  107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 1078193712 182 H-FILPFITLTLTMVHLLFLHETGSNNP 208
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 258-329 5.32e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.80  E-value: 5.32e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 258 PANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMF-RPFSQ--FLFWTLI 329
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATavFLFGTLV 140
petD CHL00058
cytochrome b6/f complex subunit IV
 258-329 2.82e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 52.70  E-value: 2.82e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 258 PANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMFR---PFSQFLFWTLI 329
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRrpvATTVFLIGTAV 139
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 258-329 9.50e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 9.50e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1078193712 258 PANPLNTPTHIKPEWYFLFAYAILRSVPNKLGGVLALLLSILILVFIPMLHTAKQRSMMF-RPFSQ--FLFWTLI 329
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATtvFLFGTVV 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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