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Conserved domains on  [gi|1078193427|gb|AOV84297|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Physeter catodon]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 4.98e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.07  E-value: 4.98e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427   1 MNILLTLLTNTTLALLLMLIAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078193427  81 TNNLKTMLTTALFLISLLAASLAYEWTQEGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 4.98e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.07  E-value: 4.98e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427   1 MNILLTLLTNTTLALLLMLIAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078193427  81 TNNLKTMLTTALFLISLLAASLAYEWTQEGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-112 3.14e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.66  E-value: 3.14e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLKTM-LTTALFLISLL 98
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1078193427  99 AASLAYEWTQEGLE 112
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 20-113 2.01e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 81.71  E-value: 2.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLKTM-LTTALFLISLL 98
Cdd:COG0838    25 LSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEMLVFIAIL 102

                          90
                  ....*....|....*
gi 1078193427  99 AASLAYEWTQEGLEW 113
Cdd:COG0838   103 LVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 4.98e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.07  E-value: 4.98e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427   1 MNILLTLLTNTTLALLLMLIAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1078193427  81 TNNLKTMLTTALFLISLLAASLAYEWTQEGLEWAE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 20-115 3.13e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 139.67  E-value: 3.13e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLA 99
Cdd:MTH00136   21 VSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLT 100

                          90
                  ....*....|....*.
gi 1078193427 100 ASLAYEWTQEGLEWAE 115
Cdd:MTH00136  101 LGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 20-115 2.24e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 137.43  E-value: 2.24e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLA 99
Cdd:MTH00069   19 ISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLT 98

                          90
                  ....*....|....*.
gi 1078193427 100 ASLAYEWTQEGLEWAE 115
Cdd:MTH00069   99 LGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 3.80e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 129.23  E-value: 3.80e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427   1 MNILLTLLTNTTLALLLMLIAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1078193427  81 TNNLKTMLTTALFLISLLAASLAYEWTQEGLEWA 114
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 20-115 8.62e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.86  E-value: 8.62e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLA 99
Cdd:MTH00042   21 AGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILT 100

                          90
                  ....*....|....*.
gi 1078193427 100 ASLAYEWTQEGLEWAE 115
Cdd:MTH00042  101 IGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 20-113 7.42e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 110.76  E-value: 7.42e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLttALFLISLLA 99
Cdd:MTH00203   21 IAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLL--AFLFLILLT 98

                          90
                  ....*....|....
gi 1078193427 100 ASLAYEWTQEGLEW 113
Cdd:MTH00203   99 LGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-112 3.14e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.66  E-value: 3.14e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLKTM-LTTALFLISLL 98
Cdd:pfam00507   3 LSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 1078193427  99 AASLAYEWTQEGLE 112
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 1.24e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 97.54  E-value: 1.24e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLAASLAYEWTQEGL 111
Cdd:MTH00161   32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                  ..
gi 1078193427 112 EW 113
Cdd:MTH00161  112 EW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 32-115 1.31e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 92.61  E-value: 1.31e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA-TQTNNLKTMLTTALFLIsLLAASLAYEWTQEG 110
Cdd:MTH00148   34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSlGSSFSVWSLTSLFIFLL-ILILGLFHEWNEGS 112


                  ....*
gi 1078193427 111 LEWAE 115
Cdd:MTH00148  113 LDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-115 1.12e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 87.74  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLAASLAYEWTQEGL 111
Cdd:MTH00202   34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                  ....
gi 1078193427 112 EWAE 115
Cdd:MTH00202  114 DWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 4.04e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 86.07  E-value: 4.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLISLLAASLAYEWTQEGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ...
gi 1078193427 112 EWA 114
Cdd:MTH00012  114 DWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 9.46e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.84  E-value: 9.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  31 TEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLIsLLAASLAYEWTQEG 110
Cdd:MTH00055   36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLI-ILTIGLIYEWVKGG 114


                  ...
gi 1078193427 111 LEW 113
Cdd:MTH00055  115 LEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 20-113 2.01e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 81.71  E-value: 2.01e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYTEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLKTM-LTTALFLISLL 98
Cdd:COG0838    25 LSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFgLIEMLVFIAIL 102

                          90
                  ....*....|....*
gi 1078193427  99 AASLAYEWTQEGLEW 113
Cdd:COG0838   103 LVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-114 3.22e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 76.44  E-value: 3.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNL-KTMLTTALFLISLLAASLAYEWTQEG 110
Cdd:PRK06602   40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgWLGFVEAMIFILVLLVGLVYLWRKGA 117


                  ....
gi 1078193427 111 LEWA 114
Cdd:PRK06602  118 LDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 2.45e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 71.25  E-value: 2.45e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLK--TMLTTALFLIsLLAASLAYEWTQE 109
Cdd:MTH00018   32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIApfGFWTMVGFLF-ILTLGLIYEWIKG 108


                  ....
gi 1078193427 110 GLEW 113
Cdd:MTH00018  109 GLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 7.66e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 70.35  E-value: 7.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  31 TEKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQTNNLKTMLTTALFLIsLLAASLAYEWTQEG 110
Cdd:MTH00030   41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLI-VLAIGLAYEWIKGG 119


                  ...
gi 1078193427 111 LEW 113
Cdd:MTH00030  120 LEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-113 2.99e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.83  E-value: 2.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  33 KTSPYECGFDPMQSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWATQTNNLKT--MLTTALFLISLLAAsLAYEWTQ 108
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVfgLVEMALFMLTVFVA-YAYVWRR 113


                  ....*
gi 1078193427 109 EGLEW 113
Cdd:PRK07928  114 GGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 20-113 5.41e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.99  E-value: 5.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  20 IAFWLPQLNAYT----EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLK-TMLTTALFL 94
Cdd:CHL00022   23 LAFLISGLLAPIskgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGvSAFIEALIF 100

                          90
                  ....*....|....*....
gi 1078193427  95 ISLLAASLAYEWTQEGLEW 113
Cdd:CHL00022  101 VLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 8.40e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.36  E-value: 8.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  32 EKTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPlpWATQTNNLKTM-LTTALFLISLLAASLAYEWTQEG 110
Cdd:PRK07756   41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFaLIEMLIFVVMLLVGLAYAWKKKV 118


                  ...
gi 1078193427 111 LEW 113
Cdd:PRK07756  119 LQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 1.07e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.27  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078193427  33 KTSPYECGFDPMQSARlPFSMKFFLVAITFLLFDLEIALLlpLPWATQTNNLKTM-LTTALFLISLLAASLAYEWTQEGL 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFgLIEMLLFIVLLTIGFIYAWKKGAL 123


                  ..
gi 1078193427 112 EW 113
Cdd:PRK08489  124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 33-73 9.27e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 38.72  E-value: 9.27e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1078193427  33 KTSPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 1.94e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.95  E-value: 1.94e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1078193427  35 SPYECGFDPMQSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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