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Conserved domains on  [gi|1078192986|gb|AOV83887|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Physeter catodon]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 241 LFLGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQT 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 241 LFLGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQT 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
6-303 4.70e-123

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 354.86  E-value: 4.70e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   6 ILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILALTM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  86 WSPLPMPYPLI--NMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 164 ALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 244 GTYHNPYtPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMW 303
Cdd:pfam00146 242 GGWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 2.72e-114

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 333.64  E-value: 2.72e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:COG1005    10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPM--PYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSG 158
Cdd:COG1005    90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 159 SFTLSALATTQEQLW-LLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNML 237
Cdd:COG1005   170 SLNLSEIVEAQAGGLwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1078192986 238 STILFLGTYHNPYTPELHTT-----NLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALA 299
Cdd:COG1005   250 ATTLFLGGWLGPFPILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 570.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 241 LFLGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQT 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 535.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   3 MINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILA 82
Cdd:MTH00111    8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  83 LTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTL 162
Cdd:MTH00111   88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 163 SALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILF 242
Cdd:MTH00111  168 QTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILF 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1078192986 243 LGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQT 318
Cdd:MTH00111  248 LNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-317 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 513.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00071    6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00071   86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00071  166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1078192986 241 LFLGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQ 317
Cdd:MTH00071  246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 506.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00134    7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00134   87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00134  167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 241 LFLGTYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPPQT 318
Cdd:MTH00134  247 LFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-316 1.72e-150

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 424.71  E-value: 1.72e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   3 MINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILA 82
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  83 LTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTL 162
Cdd:MTH00218   85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 163 SALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILF 242
Cdd:MTH00218  165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1078192986 243 LGTYHNpytpelhTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPP 316
Cdd:MTH00218  245 LGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-316 6.72e-148

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 418.61  E-value: 6.72e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00040    5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00040   85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00040  165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 241 LFLG--TYHNPYTPeLHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPP 316
Cdd:MTH00040  245 LFLGggSPFNEIFP-INIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
NADHdh pfam00146
NADH dehydrogenase;
6-303 4.70e-123

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 354.86  E-value: 4.70e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   6 ILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILALTM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  86 WSPLPMPYPLI--NMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 164 ALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 244 GTYHNPYtPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMW 303
Cdd:pfam00146 242 GGWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-310 6.16e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 346.76  E-value: 6.16e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00193    3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00193   83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00193  163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 241 LFLGTYHNPYTpelhttnLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIM 310
Cdd:MTH00193  243 MFLGGDLLSLL-------FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIF 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 3-302 6.63e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 346.86  E-value: 6.63e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   3 MINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILA 82
Cdd:MTH00143    4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  83 LTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTL 162
Cdd:MTH00143   84 LLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 163 SALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILF 242
Cdd:MTH00143  164 IEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 243 LGTYHNPYTpeLHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCM 302
Cdd:MTH00143  244 FGGSSVLFL--LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-313 4.57e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 339.80  E-value: 4.57e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00195    3 ISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00195   83 LALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00195  163 DFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTI 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1078192986 241 LFLGTYHNPYtpelhttnLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAG 313
Cdd:MTH00195  243 LFLGGGGTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 2.72e-114

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 333.64  E-value: 2.72e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:COG1005    10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPM--PYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSG 158
Cdd:COG1005    90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 159 SFTLSALATTQEQLW-LLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNML 237
Cdd:COG1005   170 SLNLSEIVEAQAGGLwFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1078192986 238 STILFLGTYHNPYTPELHTT-----NLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALA 299
Cdd:COG1005   250 ATTLFLGGWLGPFPILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-307 5.86e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 331.61  E-value: 5.86e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF 160
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 161 TLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTI 240
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1078192986 241 LFLGTYHNpytpeLHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISL 307
Cdd:MTH00225  242 LFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-316 1.01e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 319.37  E-value: 1.01e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:MTH00054    3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPM--PYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSG 158
Cdd:MTH00054   83 LAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 159 SFTLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLS 238
Cdd:MTH00054  163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 239 TILFLGTYHNPYTPELHTTNLIL---KTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTP 315
Cdd:MTH00054  243 VILFLGGWLVISGPTSYFSNFVWfgiKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                  .
gi 1078192986 316 P 316
Cdd:MTH00054  323 P 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-316 1.61e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 316.29  E-value: 1.61e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   2 FMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALIL 81
Cdd:MTH00216    8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  82 ALTMWSPLPMPYPLI--NMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGS 159
Cdd:MTH00216   88 ALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 160 FTLSALATTQEQLWLLFPLWP-LTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLS 238
Cdd:MTH00216  168 LSITEIVLAQNNGIWFFFPLFpVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 239 TILFLGTYHNPyTPELHTTNLI--LKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHISLPIMTAGTPP 316
Cdd:MTH00216  248 TILFLGGWLSP-IKYFKGGAGWfgLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 2.50e-107

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 315.59  E-value: 2.50e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALI 80
Cdd:PRK06076   11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 LALTMWSPLPM--PYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSG 158
Cdd:PRK06076   91 PAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 159 SFTLSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLS 238
Cdd:PRK06076  171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1078192986 239 TILFLGTYHNPYTPELHTTNLI---LKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMW 303
Cdd:PRK06076  251 TTLFLGGWLPPFPLGGGIPGAIwfvLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-311 2.40e-99

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 294.77  E-value: 2.40e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   2 FMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALIL 81
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  82 ALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFT 161
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 162 LSALATTQeQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTIL 241
Cdd:MTH00010  165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 242 FLGTYHNPYTPELhttNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMwhISLPIMT 311
Cdd:MTH00010  244 FTSFIPSIFISDL---MLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-316 1.11e-88

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 268.81  E-value: 1.11e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   4 INILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILAL 83
Cdd:MTH00029   11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  84 TMWSPLPMPYP--LINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFT 161
Cdd:MTH00029   91 LAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 162 LSALATTQEQLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTIL 241
Cdd:MTH00029  171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 242 FLGTYHNPYTPELHTTNLIL----------------KTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMWHI 305
Cdd:MTH00029  251 FLGGWLSPLDGIPTPPEAFSifeqiasskssfwfftKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330

                         330
                  ....*....|.
gi 1078192986 306 SLPIMTAGTPP 316
Cdd:MTH00029  331 GILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-298 2.32e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 209.76  E-value: 2.32e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   5 NILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILALT 84
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  85 MWSPLPMPYPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSa 164
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 165 lattqeqLWLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILFLG 244
Cdd:MTH00090  160 -------SSFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1078192986 245 tyhnpytpelhtTNLILKTLLLTMsFLWIRASYPRFRYDQLMHLLWKSFLPLAL 298
Cdd:MTH00090  233 ------------FSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 6-298 7.02e-55

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 182.46  E-value: 7.02e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   6 ILMLTLPILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILALTM 85
Cdd:CHL00032   33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  86 WSPLPMPYPLI--NMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSftLS 163
Cdd:CHL00032  113 YLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LS 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 164 ALATTQEQLWLLFPLWPL------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNML 237
Cdd:CHL00032  191 TVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1078192986 238 STILFLGTYHN--PY--TPELHTTNL----------ILKTLLLTMSFLWI----RASYPRFRYDQLMHLLWKSFLPLAL 298
Cdd:CHL00032  271 VTVLYLGGWNLsiPYifIPELFEINKtggvfgttigIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 13-298 1.26e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 169.33  E-value: 1.26e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  13 ILLAVAFLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTKEPLRPATSSTTMFIIAPMLALILALTMWSPLPMP 92
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  93 YPLINMHLGILFMLAMSSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSALatTQEQL 172
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDF--YYSGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 173 WLLFPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNMLSTILFLGTYhnpytp 252
Cdd:MTH00058  172 LSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG------ 245

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1078192986 253 elHTTNLILKTLLLtmsFLWIRASYPRFRYDQLMHLLWKSFLPLAL 298
Cdd:MTH00058  246 --FVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-303 7.93e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 120.29  E-value: 7.93e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986   1 MFMINILMLTLPILLAVAFLTLVERKTLGYMQLRKGPnivgphGLLQPFADAIKLFTKEPLRPATSSTtMFIIAPMLALI 80
Cdd:COG0650     2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986  81 --LALTMWSPLPMPYPLINMH---LGILFMLAMSSLTvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155
Cdd:COG0650    75 amLLAALLVPVLTTGPPLSFSgdlIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALAL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1078192986 156 MSGSFTLSALATTQEQLWLLFPLWPL---TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANII 232
Cdd:COG0650   152 LAGSTSLSDIVAYQAAHGPLLLSPSLllaAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLF 231

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1078192986 233 MMNMLSTILFLGtYHNPYTPELHTTNLILKTLLLTMSFLWIRASYPRFRYDQLMHLLWKSFLPLALALCMW 303
Cdd:COG0650   232 VLLSLFVNLFLP-WGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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