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Conserved domains on  [gi|1067058329|gb|AOQ02617|]
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cytochrome b, partial (mitochondrion) [Phacochoerus africanus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-120 7.51e-95

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 277.29  E-value: 7.51e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-120 7.51e-95

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 277.29  E-value: 7.51e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 1.68e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.40  E-value: 1.68e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:cd00284    16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1067058329  81 YGSYM--FLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:cd00284    96 YGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-120 9.97e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 9.97e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1067058329  81 YG--SYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 1.08e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.27  E-value: 1.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:COG1290    33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1067058329  81 YGSY-----MfleTWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:COG1290   113 YGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-120 7.51e-95

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 277.29  E-value: 7.51e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 1-120 2.79e-85

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 252.90  E-value: 2.79e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00119   25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00119  105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 1-120 2.95e-83

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 248.03  E-value: 2.95e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00131   24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00131  104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00156
cytochrome b; Provisional
 1-120 1.40e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 245.46  E-value: 1.40e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00156   14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00156   94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00074
cytochrome b; Provisional
 1-120 3.13e-82

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 245.36  E-value: 3.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00074   25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00074  105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00191
cytochrome b; Provisional
 1-120 4.94e-80

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 239.05  E-value: 4.94e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00191   21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00191  101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00145
cytochrome b; Provisional
 1-120 1.32e-74

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 225.55  E-value: 1.32e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00145   25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00145  105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 1-120 2.71e-73

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 222.27  E-value: 2.71e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00034   24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00034  104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 1-120 2.92e-72

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 219.93  E-value: 2.92e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00016   25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00016  105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 1-120 4.99e-62

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 193.76  E-value: 4.99e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00022   23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00022  103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00224
cytochrome b; Provisional
 1-120 2.39e-61

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 192.06  E-value: 2.39e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00224   25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00224  105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00053
cytochrome b; Provisional
 1-120 3.01e-59

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 186.45  E-value: 3.01e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00053   25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00053  105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 1.68e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.40  E-value: 1.68e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:cd00284    16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1067058329  81 YGSYM--FLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:cd00284    96 YGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
CYTB MTH00033
cytochrome b; Provisional
 1-120 7.24e-51

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 165.11  E-value: 7.24e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00033   21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00033  101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-120 9.97e-51

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 9.97e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1067058329  81 YG--SYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 1.08e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.27  E-value: 1.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:COG1290    33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1067058329  81 YGSY-----MfleTWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:COG1290   113 YGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 1-120 6.40e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 141.23  E-value: 6.40e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:MTH00086   13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00086   93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 4-120 3.92e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 107.38  E-value: 3.92e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   4 ISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGS 83
Cdd:MTH00046   18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1067058329  84 YMFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00046   98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 10-118 8.06e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 90.93  E-value: 8.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329  10 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSYMFLE- 88
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1067058329  89 -TWNIGVILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-118 1.13e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.76  E-value: 1.13e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1067058329   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLY 80
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1067058329  81 YGSYMFLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-120 3.90e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 59.18  E-value: 3.90e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1067058329  65 SMFFICLFIHVGRGLYYGSYMFLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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