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Conserved domains on  [gi|1051330957|gb|AOA49599|]
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NADH dehydrogenase subunit F, partial (chloroplast) [Senecio transmarinus]

Protein Classification

NADH dehydrogenase subunit F C-terminal domain-containing protein( domain architecture ID 10470167)

NADH dehydrogenase subunit F C-terminal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 11-128 3.03e-56

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


:

Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 175.11  E-value: 3.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051330957  11 RIYLLTFEGHLNVHFQNYSGKRKTPFYSISLWGKEGSKISNKNFNFRLvtLLKMKKKGGPSFFSNKVSKFDENVRNMIQP 90
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLL--LLTMNNNEKVSFFSKKTYRIDGNVRNMTRP 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1051330957  91 VLSIPNFANIKTSLYPYESDNTMLFPILILILFTLFVG 128
Cdd:pfam01010  79 FITITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVG 116
PRK07376 super family cl35574
NADH-quinone oxidoreductase subunit L;
1-19 1.84e-07

NADH-quinone oxidoreductase subunit L;


The actual alignment was detected with superfamily member PRK07376:

Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 48.48  E-value: 1.84e-07
                          10
                  ....*....|....*....
gi 1051330957   1 TAGLTAFYMFRIYLLTFEG 19
Cdd:PRK07376  438 TAGMTAFYMFRMYFLTFEG 456
 
Name Accession Description Interval E-value
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 11-128 3.03e-56

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 175.11  E-value: 3.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051330957  11 RIYLLTFEGHLNVHFQNYSGKRKTPFYSISLWGKEGSKISNKNFNFRLvtLLKMKKKGGPSFFSNKVSKFDENVRNMIQP 90
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLL--LLTMNNNEKVSFFSKKTYRIDGNVRNMTRP 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1051330957  91 VLSIPNFANIKTSLYPYESDNTMLFPILILILFTLFVG 128
Cdd:pfam01010  79 FITITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVG 116
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-128 5.43e-56

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 185.10  E-value: 5.43e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051330957   1 TAGLTAFYMFRIYLLTFEGHLNVHFQNYSGKRKTPFYSISLWGKEGSKISNKNFnfrlvTLLKMKKKGGPSFFSNKVSKF 80
Cdd:CHL00025  438 TAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLL-----LLLTMNNNERVSFFSKKTYKI 512

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1051330957  81 DENVRNMIQPVLSIpnFANIKTSLYPYESDNTMLFPILILILFTLFVG 128
Cdd:CHL00025  513 DGNVRNMIRSFITI--FGNKKTFSYPHESDNTMLFPLLVLVLFTLFVG 558
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-19 1.84e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 48.48  E-value: 1.84e-07
                          10
                  ....*....|....*....
gi 1051330957   1 TAGLTAFYMFRIYLLTFEG 19
Cdd:PRK07376  438 TAGMTAFYMFRMYFLTFEG 456
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-19 3.11e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 35.90  E-value: 3.11e-03
                          10
                  ....*....|....*....
gi 1051330957   1 TAGLTAFYMFRIYLLTFEG 19
Cdd:COG1009   416 GAFLTAFYSFRLFFLVFFG 434
 
Name Accession Description Interval E-value
Proton_antipo_C pfam01010
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ...
 11-128 3.03e-56

NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.


Pssm-ID: 366417 [Multi-domain]  Cd Length: 244  Bit Score: 175.11  E-value: 3.03e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051330957  11 RIYLLTFEGHLNVHFQNYSGKRKTPFYSISLWGKEGSKISNKNFNFRLvtLLKMKKKGGPSFFSNKVSKFDENVRNMIQP 90
Cdd:pfam01010   1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLL--LLTMNNNEKVSFFSKKTYRIDGNVRNMTRP 78

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1051330957  91 VLSIPNFANIKTSLYPYESDNTMLFPILILILFTLFVG 128
Cdd:pfam01010  79 FITITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVG 116
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-128 5.43e-56

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 185.10  E-value: 5.43e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1051330957   1 TAGLTAFYMFRIYLLTFEGHLNVHFQNYSGKRKTPFYSISLWGKEGSKISNKNFnfrlvTLLKMKKKGGPSFFSNKVSKF 80
Cdd:CHL00025  438 TAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKNSSFYSISLWGKEESKKINKLL-----LLLTMNNNERVSFFSKKTYKI 512

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1051330957  81 DENVRNMIQPVLSIpnFANIKTSLYPYESDNTMLFPILILILFTLFVG 128
Cdd:CHL00025  513 DGNVRNMIRSFITI--FGNKKTFSYPHESDNTMLFPLLVLVLFTLFVG 558
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-19 1.84e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 48.48  E-value: 1.84e-07
                          10
                  ....*....|....*....
gi 1051330957   1 TAGLTAFYMFRIYLLTFEG 19
Cdd:PRK07376  438 TAGMTAFYMFRMYFLTFEG 456
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 2-19 2.35e-04

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 39.37  E-value: 2.35e-04
                          10
                  ....*....|....*...
gi 1051330957   2 AGLTAFYMFRIYLLTFEG 19
Cdd:PRK06590  422 AFLTAFYSFRLIFLVFHG 439
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-19 3.11e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 35.90  E-value: 3.11e-03
                          10
                  ....*....|....*....
gi 1051330957   1 TAGLTAFYMFRIYLLTFEG 19
Cdd:COG1009   416 GAFLTAFYSFRLFFLVFFG 434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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