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Conserved domains on  [gi|1047836218|gb|ANW61738|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Strophurus taeniatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-282 1.38e-116

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 338.34  E-value: 1.38e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFY 293
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-282 1.38e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 338.34  E-value: 1.38e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFY 293
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-275 4.80e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 4.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  12 STHWLLAWAGLEMNTLAIIPII-SKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTLPESTM----- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  86 ------MLTFALAMKLGLAPLHFWLPEVLQGS-TLLTALIISTWQKLAP-----VTLLLMTINSLDHKMLMVLGLLSALL 153
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 154 GGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLI---------STSSKTLTDLGISQP 224
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFlcagsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1047836218 225 QVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALST 275
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-282 6.57e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 6.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   3 ILGTIITMSSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQL--- 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  79 --TLPESTMMLTFALAM-------KLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLmtinsldhKMLMVLGLL 149
Cdd:COG1007   192 laAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL--------RLLVEAFPG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 150 SALLGGWM---------------GLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLIS 210
Cdd:COG1007   264 LAADWQLLlavlavlsmtvgnlaALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMnlgaFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 211 TSSK-----TLTD---LGISQPQVPTLLTISMLalmSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:COG1007   344 LSRKggeaeEIEDlagLARRSPLLALAMTIFLL---SLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-282 2.52e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 2.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   3 ILGTIITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTLP 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  82 ESTMMLTF------------ALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLL-MTINSLD------HKM 142
Cdd:TIGR01770 192 LSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrLFLYILFgfseawQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 143 LMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLISTSS----- 213
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLSLLRSykdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 214 -KTLTDLGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:TIGR01770 352 iEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-282 1.38e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 338.34  E-value: 1.38e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFY 293
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-282 5.20e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 319.06  E-value: 5.20e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00135   12 SLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSH 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMtINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00135   92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQ-IAPTNPTLLITLGLTSTLVGGWGGLN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00135  171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSL 250

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00135  251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFY 292
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-282 1.38e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 315.71  E-value: 1.38e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00070   12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00070   92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00070  172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00070  252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFY 293
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-282 1.11e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 290.59  E-value: 1.11e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00105   12 TLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00105   92 PTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00105  172 QTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00105  252 GGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFY 293
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-282 1.97e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.07  E-value: 1.97e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00041   12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00041   92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00041  172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00041  252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFY 293
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-282 1.51e-76

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 236.40  E-value: 1.51e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTL 80
Cdd:MTH00200   12 SLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00200   92 PLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00200  172 QTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSL 251

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00200  252 GGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFY 293
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-282 1.32e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 171.93  E-value: 1.32e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKtgqwdiSQLTLP 81
Cdd:MTH00160   14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN------LMLFNN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  82 ESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSldhKMLMVLGLLSALLGGWMGLNQ 161
Cdd:MTH00160   88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIILSAIIGAIGGLNQ 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 162 TQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSLG 241
Cdd:MTH00160  165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1047836218 242 GLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00160  245 GLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFY 285
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-282 6.38e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 164.67  E-value: 6.38e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISqltlp 81
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  82 estMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDH-KMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLtISMLALMSL 240
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGL-SIISLLLSL 243

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFY 285
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-282 3.77e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 142.23  E-value: 3.77e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFnawktgQWDISQLTL 80
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKMLMVLGLLSALLGGWMGLN 160
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 161 QTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLALMSL 240
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1047836218 241 GGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYY 289
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-282 7.53e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 133.26  E-value: 7.53e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   1 SLILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFnawktgqwdiSQLTL 80
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL----------SFSNL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  81 PESTM---MLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDhkMLMVLGLLSALLGGWM 157
Cdd:MTH00197   76 YLSLLsvvLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFM--GLLICSVLSSLIGGIG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 158 GLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQVPTLLTISMLAL 237
Cdd:MTH00197  154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1047836218 238 MSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00197  234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYY 278
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-275 4.80e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.46  E-value: 4.80e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  12 STHWLLAWAGLEMNTLAIIPII-SKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTLPESTM----- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  86 ------MLTFALAMKLGLAPLHFWLPEVLQGS-TLLTALIISTWQKLAP-----VTLLLMTINSLDHKMLMVLGLLSALL 153
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 154 GGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLI---------STSSKTLTDLGISQP 224
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFlcagsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1047836218 225 QVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALST 275
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-282 6.57e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 97.49  E-value: 6.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   3 ILGTIITMSSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQL--- 78
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  79 --TLPESTMMLTFALAM-------KLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLmtinsldhKMLMVLGLL 149
Cdd:COG1007   192 laAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL--------RLLVEAFPG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 150 SALLGGWM---------------GLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLIS 210
Cdd:COG1007   264 LAADWQLLlavlavlsmtvgnlaALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMnlgaFAVILL 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 211 TSSK-----TLTD---LGISQPQVPTLLTISMLalmSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:COG1007   344 LSRKggeaeEIEDlagLARRSPLLALAMTIFLL---SLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 2-282 5.06e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.94  E-value: 5.06e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDI----- 75
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  76 --------SQLTLPESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLApVTLLLMTINsLDHKMLMVLG 147
Cdd:MTH00196   82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG-IFSILVSIG-LNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 148 LLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINP--NITLITLLMYLLLTTAMFSTLISTSSKTLTDLGISQPQ 225
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfeSIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1047836218 226 VPTLLTISMLAL----MSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00196  240 LSRRLPILAITLaltfLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYY 300
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-282 2.52e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 2.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   3 ILGTIITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTLP 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  82 ESTMMLTF------------ALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLL-MTINSLD------HKM 142
Cdd:TIGR01770 192 LSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrLFLYILFgfseawQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 143 LMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLISTSS----- 213
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLSLLRSykdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 214 -KTLTDLGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:TIGR01770 352 iEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
3-282 8.68e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.42  E-value: 8.68e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   3 ILGTIITMSSTHWLLAWAGLEMNTLAIIPIIS-KQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQL--- 78
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  79 --TLPESTMMLTFALAM-------KLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLL----MTINSLDHK---M 142
Cdd:PRK05777  193 laDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 143 LMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLISTSSK---- 214
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMtlgaFGVISLLRRKggea 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1047836218 215 -TLTDL-GISQ--PqvptLLTISMLALM-SLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:PRK05777  353 eSISDFaGLSKrsP----LLAAVMTIFMlSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-282 2.75e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.08  E-value: 2.75e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAI-IPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDI----S 76
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  77 QLTLPESTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLApVTLLLMTINSLDhKMLMVLGLLSALLGGW 156
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIG-VFSILVQIGPVT-NVVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 157 MGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAM----FSTLIS---TSSKTLTDLGISQPQVPTL 229
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMsicsFSIILSlklTKGLIVEVSGLSRKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1047836218 230 LTISmLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:MTH00199  344 LTLA-LTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYY 395
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-276 1.23e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.48  E-value: 1.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLTLP 81
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  82 ESTM----------MLTFALAMKLGLAPLHFWLPE-----------VLQGSTLLTAL--IISTWQKLAPVTLLLMTinsl 138
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFL---- 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 139 dHKMLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINpNITLITLLMYLLLTTAMFSTLI--------- 209
Cdd:COG0651   272 -GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAKALLflaagaier 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1047836218 210 STSSKTLTDLGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTL 276
Cdd:COG0651   350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSL 416
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 4-256 7.72e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 65.27  E-value: 7.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   4 LGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRAT---------EAATKYFLTQATASALILFSSTFNAWKTGQ-- 72
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  73 --WDISQLTLPESTMML----------TFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLapVTLLLMTINSLDH 140
Cdd:MTH00198  279 mlGTILSATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 141 KMLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALT-------------INPNITLITLLMYLLLTTAMFST 207
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSagtyeslqaswtyAVTYLVSALASFTVICTLEEFGT 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1047836218 208 LISTSS------------KTLTDLGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLIL 256
Cdd:MTH00198  437 RTPTSRqrdgsfgnynlvRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
39-261 3.46e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.98  E-value: 3.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  39 PRATEAATKYFLTQATASALILFSSTF----NAWKTGQWDISQLTLPESTMMLTFAL-------AMKLGLAPLHFWLPEV 107
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSLlyglSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 108 LQGSTLLTALIISTWQKLA----PVTLLLMTINSLD---HKMLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLF 180
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 181 MALTINPNITLITLLMYLLLTTAM----FSTLISTSSKTLTDlGISQ----PQVPTLLTISM-LALMSLGGLPPLTGFLP 251
Cdd:PRK02504  317 IGLVAGTEAGYASMVFYLLAYLFMnlgaFACVILFSLRTGTD-QISDyaglYQKDPLLTLGLsLCLLSLGGIPPLAGFFG 395

                         250       260
                  ....*....|....*....|...
gi 1047836218 252 K-------------WLILTELIT 261
Cdd:PRK02504  396 KiylfwagwqaglyLLVLVGLVT 418
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 37-282 1.60e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 51.90  E-value: 1.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  37 HHPRATEAATKYFLTQATAS-----ALILFSSTFN-------AWKTGQWDISQLTLPESTMMLTFALAM---------KL 95
Cdd:PRK12667  158 DRGDAVEAAIKYALIGAVGTtlyflALAFLYATFGtlnmadlSAKIRGLSFPLTGGLAGNPPLALGVALalalwaftiKA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  96 GLAPLHFWLPEVLQG-----STLLTALIIST----------------------WQKLAPVTLLLMTINSLDHKMLMVLgl 148
Cdd:PRK12667  238 AIFPNHFWLPDAHPAapspvSAMLSGLVVNVgayaiirflytifgispslidfRAALSPILIILGAVSAIIGALMMVV-- 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 149 lsallggwmglnQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLISTS--------SKTLTDLG 220
Cdd:PRK12667  316 ------------QKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASgvfihaagTRDIDELA 383

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1047836218 221 ISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLFFY 282
Cdd:PRK12667  384 GLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGY 445
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-280 4.82e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 50.65  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  22 LEMNTLAIIPIISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQWDISQLT--LPESTMMLT------FALAM 93
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  94 KLGLAPLHFWLPEVLQG-STLLTALIISTWQKLA--PVTLLLMTINSLD-------HKMLMVLGLLSALLGGWMGLNQTQ 163
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTVFGGDfrfalglGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 164 TRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTTAMFSTLI--------STSSKTLTDLGISQPQVPTLLTISML 235
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFlaagaievTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1047836218 236 ALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMALSTLPSLF 280
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALL 419
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-271 5.10e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 5.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  23 EMNTLAIIPIISKQHHpRATEAATKYFLTQATASALILFSSTFNAWKTGQWDIS-------QLTLPESTMMLTFALA--- 92
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLLafg 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  93 -MKLGLAPLHFWLPE-----------VLQGS---------TLLTALIISTwqKLAPVTLLLMTINSLDHkMLMVLGLLSA 151
Cdd:PRK08668  207 vAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgaygfLLVLYVLPGT--KLFSEFGTYRGVPLFNY-ILAWLGNISI 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 152 LLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTtAMFSTLI---------STSSKTLTDLGIS 222
Cdd:PRK08668  284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNH-ALFKGLFflifaaviyRTGTTKISEMGGL 362

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1047836218 223 QPQVPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIM 271
Cdd:PRK08668  363 IEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-256 7.42e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.94  E-value: 7.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  44 AATKYFLTQATASALILFSSTFNAWKTGQW----DISQLTLPESTMMLTF-----ALAMKLGLAPLHFWLPEV-LQGSTL 113
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVQTWLFlaffiAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 114 LTALIISTWQKLAPVTLLLMTINSLDHKM------LMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMAltinp 187
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLRFNLPLFPDASlyfapvLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG----- 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 188 nITLITLLMYLLLTTAMFSTLISTS--------------SKTLTDLGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKW 253
Cdd:TIGR01972 312 -IFSFNELGISGAVFQMISHGLITAalfllvgvlyerahTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ...
gi 1047836218 254 LIL 256
Cdd:TIGR01972 391 LIL 393
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 27-256 3.65e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.77  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  27 LAIIP---IISKQHHPRATEAATKYFLTQATASALILFSSTFNAWKTGQW-----DISQLTLPESTMMLTF-----ALAM 93
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQLLLFlaffiAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  94 KLGLAPLHFWLPEVLQ-----GSTLLTALII----------------STWQKLAPVTLLLMTINSLdhkmlmvlgllsal 152
Cdd:COG1008   222 KVPMFPFHTWLPDAHVeaptaGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGVIGII-------------- 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 153 LGGWMGLNQTQTRKIMAFSSIAHMGWLFMAltinpnITLITLLMYLLLTTAMFS-TLIS-------------TSSKTLTD 218
Cdd:COG1008   288 YGALVALAQTDLKRLIAYSSVSHMGFVLLG------IFALNPLGLQGAVLQMVShGLITaalfllvgvlydrTHTRDIAD 361

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1047836218 219 LGISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLIL 256
Cdd:COG1008   362 LGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
ndhB CHL00049
NADH dehydrogenase subunit 2
 40-252 4.67e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 44.61  E-value: 4.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  40 RATEAATKYFLTQATASALILFS-STFNAWKTGQWDISQLT--LPESTM-----------MLTFALAMKLGLAPLHFWLP 105
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELQEIVngLINTQMynspgisialiFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 106 EVLQGSTLLTALIISTWQKLAPV-------TLLLMTINSLDHKMLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGW 178
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASalatrifDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 179 LFMAL-TINPNITLITLLMYLLLTTAM----FSTLISTSSKTLTD-------LGISQPqvptLLTISM-LALMSLGGLPP 245
Cdd:CHL00049  319 VIIGIiVGDSNDGYASMITYMLFYIFMnlgtFACIVLFGLRTGTDnirdyagLYTKDP----FLALSLaLCLLSLGGIPP 394


                  ....*..
gi 1047836218 246 LTGFLPK 252
Cdd:CHL00049  395 LAGFFGK 401
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
39-182 2.90e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.99  E-value: 2.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  39 PRATEAATKYFLTQATASALILFSSTFNAWKTG--QWDISQL---TLPESTMMLTFA-----LAMKLGLAPLHFWLPEV- 107
Cdd:PRK06473  153 QRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAh 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 108 LQGSTLLTALIISTWQKLAPVTLLLMTINSLDHKM------LMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFM 181
Cdd:PRK06473  233 VEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWvylapwLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312


                  .
gi 1047836218 182 A 182
Cdd:PRK06473  313 A 313
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-185 1.75e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.35  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218   2 LILGTIITMSSTHWLLAWAGLEMNTLAIIPIISKQHHPRATEAATKYFLTQATA------SALILFSSTFNAWKTGQWDI 75
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  76 SQLT-----LPESTMMLTF-----ALAMKLGLAPLHFWLPEV-LQGSTLLTALIISTWQKLAPVTLLLMT-------INS 137
Cdd:PRK08676  191 TELAahaslLSPSVLGASFlfifiGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSallrqsgAAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1047836218 138 LDHKMLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIAHMGWLFMALTI 185
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGI 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 100-256 1.78e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 100 LHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDHK-----MLMVLGLLSALLGGWMGLNQTQTRKIMAFSSIA 174
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKApltllIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 175 HMGWLFMALTI--NPNITLITLLMYLLLTTAMFSTLISTSSKTLTD------LGISQPQVPTLLTISMLALMSLGGLPPL 246
Cdd:MTH00032  324 QLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVDeqdmrkMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403

                         170
                  ....*....|
gi 1047836218 247 TGFLPKWLIL 256
Cdd:MTH00032  404 TGFYSKDLIL 413
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 44-256 2.56e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  44 AATKYFLTQATASALILFS----STFNAWKTGQWDISQL---TLPESTMMLTF-----ALAMKLGLAPLHFWLPEVLQ-- 109
Cdd:PRK05846  162 AATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGVQYWLFlaffiAFAVKMPMFPLHTWLPDAHVqa 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 110 ---GSTLLTALIIST----------------WQKLAPVTLLLMTINSLdhkmlmvlgllsalLGGWMGLNQTQTRKIMAF 170
Cdd:PRK05846  242 ptaGSVLLAGILLKMgaygllrfslplfpdaSHEFAPIIITLGVIAII--------------YGALVALAQTDIKKLIAY 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 171 SSIAHMGWLFMAltinpnITLITLLMYLLLTTAMFSTLISTS--------------SKTLTDLGISQPQVPTLLTISMLA 236
Cdd:PRK05846  308 SSISHMGFVTLG------IFAGNQLGIQGAIFQMISHGLSSAalfllvgvlydrlhTRDIADYGGLAKVMPVLAAFFLFF 381

                         250       260
                  ....*....|....*....|
gi 1047836218 237 LMSLGGLPPLTGFLPKWLIL 256
Cdd:PRK05846  382 AMASLGLPGTSGFVGEFLIL 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-255 3.17e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 38.92  E-value: 3.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  22 LEMNTLAIIPIISKQHH-PRATEAATKYFLTQATASALILFSStfnAWKTGQWDISQLTLPESTM-------------ML 87
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  88 TFALAMKLGLAPLHFWLPEVLQG-----STLLTALIISTWQKLAPV--TLLLMTINSLDHKMLMVLGLLSALLG-GWMGL 159
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapssiSAMLLVIKQAGLYALARVlfSIYGPAINLATVGWVIIILGCLTMFVgVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 160 NQTQTRKIMAFSSIAHMGWLFMALTINPNITLITLLMYLLLTT-----------AMFSTLIS---------TSSKTLTDL 219
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMLLGLGVGLAALGDPAMASYGEIAlaggiyhivnhALYKALLFltagaviyeTGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1047836218 220 GISQPQVPTLLTISMLALMSLGGLPPLTGFLPKWLI 255
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 61-256 5.81e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.13  E-value: 5.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  61 FSSTFNAWKTGqwDISQLTLPesTMMLTFALAMKLGLAPLHFWLPEVLQGSTLLTALIISTWQKLAPVTLLLMTINSLDH 140
Cdd:MTH00020  194 FSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQ 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 141 K--MLMVLGLLSALLGGW---MGLNQTQTRKIMAFSSIAHMGWLFMALtinpNITLITLLMYLLLTTAMFSTLISTSSKT 215
Cdd:MTH00020  270 AplALIIVTIVGSLTVFFaatVGLVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFKALLFLSAGS 345

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1047836218 216 LTD-------------LGISQPQVPTLLTISMLALMslgGLPPLTGFLPKWLIL 256
Cdd:MTH00020  346 VIHalsdeqdmrkmggLISFLPLTYIFFLIGSLSLM---GFPYLTGFYSKDLIL 396
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 85-273 9.82e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 37.10  E-value: 9.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218  85 MMLTFALAmKLGLAPLHFWLPEVLQGSTLLTAL---IISTWQKLAPVTLLLMTINSLDH--------KMLMVLGLLSALL 153
Cdd:PRK06589  215 LMFIYGIA-KTAIFPVHSWLPAAMVAHYPVSALlhaVIVVKTGLFCIYKILLYIFGLSYlqrifaefNWLIFIPIVSIFY 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1047836218 154 GGWMGLNQTQTRKIMAFSSIAHMGW-LFMALTINPNITLITLLMYLLLTTA-------MFSTLISTSSKTLTDLGISQPQ 225
Cdd:PRK06589  294 SSLKALKTDNIKKILAYSTISQLSLaLLSAFILTPKALGAAILHLVSHSFAkiclfysMGSIYSLKKEDQVDKLHGTSKS 373

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1047836218 226 VPTLLTISMLALMSLGGLPPLTGFLPKWLILTELITNNLPLMSTIMAL 273
Cdd:PRK06589  374 FPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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