|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
37-573 |
0e+00 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 778.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 37 RLKNPEPGNWMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVV-EGHQSPPIVNNGAMFITTPQGQVIALNAKTGD 115
Cdd:cd10277 2 LNDAKETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFGGKqRGQESQPIVNDGVMYVTTSYNRVFAIDAKTGK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 116 EYWRYKRQLPDDLF-QLHPTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGG 194
Cdd:cd10277 82 ELWKYKHRLPEDIRpCCDVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKVIVGV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 195 SGGEFGVRGYVVAFDADTGKELWRTFTIPGPGEPGHE-TWSGDDWKTGGAPAWMTGNYDVETRTIYWGTGNAAPWPGETH 273
Cdd:cd10277 162 SGGEFGVRGFIAALDAETGKEVWRTYTVPGPGEPGSTdTWPGDAWKTGGGATWLTGTYDPETNLLYWGVGNPAPWNGDLR 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 274 PGDNLYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIHPGRNAIFWVLERKPegIKYVAGW 353
Cdd:cd10277 242 PGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYVLDRTN--GKLIWAT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 354 PFVYTDVWKGIEP-SGKPIVDPAH-KPGIGKRVEFCPSLWGGKDWPSAAYSQNTRLVYVPANEnFCGGFTGEKLPLVPGQ 431
Cdd:cd10277 320 PFVKKITWASIDLkTGRPIYDEDKvPPKKGKTVDFCPSFLGGKNWPPMAYSPDTGLFYVPANH-WCMDLTGEPVSYKKGA 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 432 LWLGTKPEDIglkvRPGATHFGELQAWDPATGKKVWSHNFPkSHLFGSVTVTAGDLVLVGGTnDRMFRAFHAKTGELLWE 511
Cdd:cd10277 399 AYLGAGFTIK----PPFEDHIGELQAIDPTTGKKVWEHKTP-LPLWGGVLTTAGGLVFTGTP-DGYFRAFDAKTGKELWE 472
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046582657 512 QKTNSGIVGMPVAYEVDGTQYIAVQSGWGVDAQRIQDALAtqnnvGVENNVPQGGVVWVFAV 573
Cdd:cd10277 473 FQTGSGIIGPPVTWEVDGKQYVAVLSGWGGAAPLWGGDMA-----KLLKNVPQGGSLWVFAL 529
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
28-540 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 682.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 28 ENYSPVTADRLKN--PEPGNWMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVVEGHQSPPIVNNGAMFITTPQGQ 105
Cdd:TIGR03075 1 AAAAAVTNEDLLNdaKDPSDWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSLGKQRGQESQPLVVDGVMYVTTSYSR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 106 VIALNAKTGDEYWRYKRQLPDDLFQLHPT---NRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLM 182
Cdd:TIGR03075 81 VYALDAKTGKILWKYDPKLPDDIIPVMCCdvvNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 183 PLIVDGKVIVGGSGGEFGVRGYVVAFDADTGKELWRTFTIPGP------------GEPGHETWSGDDWKTGGAPAWMTGN 250
Cdd:TIGR03075 161 PLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDmgylkktgkpvgGDPGAKTWPGDAWKTGGGATWGTGS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 251 YDVETRTIYWGTGNAAPWPGETHPGDNLYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIH 330
Cdd:TIGR03075 241 YDPETNLIYFGTGNPAPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAH 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 331 PGRNAIFWVLERKPEgiKYVAGWPFVYTDVW-KGIEP-SGKPIVDPAHKPG---IGKRVEFCPSLWGGKDWPSAAYSQNT 405
Cdd:TIGR03075 321 ADRNGFFYVLDRTNG--KLLSAEPFVDKVNWaTGVDLkTGRPIEVPEARSTdgkKGKPVEVCPGFLGGKNWQPMAYSPKT 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 406 RLVYVPANEnFCGGFTGEKLPLVPGQLWLGtkpedIGLKVRP-GATHFGELQAWDPATGKKVWSHNFPKShLFGSVTVTA 484
Cdd:TIGR03075 399 GLFYVPANH-VCMDYWPEKVSYKKGAAYLG-----AGFTIKPpPDDHIGSLIAWDPITGKIVWEHKEDFP-LWGGVLATA 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 485 GDLVLVgGTNDRMFRAFHAKTGELLWEQKTNSGIVGMPVAYEVDGTQYIAVQSGWG 540
Cdd:TIGR03075 472 GDLVFT-GTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSGWG 526
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
42-573 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 619.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 42 EPGNWMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVVE--GHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWR 119
Cdd:COG4993 1 DPGDWLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLPerGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 120 YKRQLPDDLFQLHPTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEF 199
Cdd:COG4993 81 YDPKLPDDAACCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSGGEF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 200 GVRGYVVAFDADTGKELWRTFTIPGPGEPGHETW-SGDDWKTGGAPAWMTGNYDVETRTIYWGTGNAAP-WPGETHPGDN 277
Cdd:COG4993 161 GPRGVVRAYDARTGKLVWRFDTIPDPGEPGAETWpPGDTWKRGGGNVWGTMSYDPELGLVYLPTGNPAPdWNGGQRPGDN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 278 LYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIHPGRNAIFWVLERKpEGiKYVAGWPFVY 357
Cdd:COG4993 241 LYSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPVDGKTRKALVQATKNGFIYVLDRE-TG-EPLVTQPFVK 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 358 TDVW-KGIEPSGK-PIVDPAHKpgIGKRVEFCPSLWGGKDWPSAAYSQNTRLVYVPANENfCGGFTGEKLPLVPGQLWLG 435
Cdd:COG4993 319 PPNWaTEIDMWGAtPIQTPPSL--DGKTTLICPGALGGKNWGPAAYDPETGLLYVPANEL-CMDYELVPREYQAGAPYLG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 436 TkpediGLKVRPG-ATHFGELQAWDPATGKKVWSHNFPKShLFGSVTVTAGDLVLVgGTNDRMFRAFHAKTGELLWEQKT 514
Cdd:COG4993 396 A-----TLTMYPCpAPPWGTLTAIDLNTGKIVWQVPLGFP-NWGGPLATAGGLVFI-GTLDGYLRAFDAKTGKELWKFRL 468
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1046582657 515 NSGIVGMPVAYEVDGTQYIAVQSGWGvdaqriqdalatqNNVGVENNVPQGGVVWVFAV 573
Cdd:COG4993 469 PSGGQATPMTYEVDGKQYVAVAAGGG-------------GWLGLGLYTPQGDYLIAFAL 514
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
46-573 |
2.78e-148 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 438.30 E-value: 2.78e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 46 WMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVVEGHQSPPIVNNGAMFITTP-QGQVIALN-AKTGDEYWRYKRQ 123
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWTFSTGVLRGHEGAPLVVGDTMYVVTPfPNNVYALDlNDPGKILWKYKPK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 124 lPDDLFQ----LHPTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEF 199
Cdd:cd10278 81 -QDPSAVavacCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 200 GVRGYVVAFDADTGKELWRT--------------FTIPGPGEPGH----ETWSGDDWKTGGAPAWMTGNYDVETRTIYWG 261
Cdd:cd10278 160 GVRGYVTAYDLKTGKLVWRAystgpdkdvligpdFNPFNPHDGGKdlglSTWPGDAWKIGGGTNWGWYSYDPKLNLVYYG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 262 TGNAAPWPGETHPGDNLYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIHPGRNAIFWVLE 341
Cdd:cd10278 240 TGNPGPWNPTQRPGDNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTVDGKKRKLLVHFDRNGFVYTLD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 342 RkpEGIKYVAGWPFVYTDVWKGIEP-SGKPIVDPAHKPGIGKRV-EFCPSLWGGKDWPSAAYSQNTRLVYVPANeNFCGG 419
Cdd:cd10278 320 R--TTGELLSAEKFDPVNNWKGVDLkTGRPVKDPEKSTHMDHNVtDICPSAMGGKDQQPSSYSPKTGLFYVPTN-HLCMD 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 420 FTGEKLPLVPGQLWLGTKpedigLKVRPG-ATHFGELQAWDPATGKKVWSH--NFPkshLFGSVTVTAGDLVLVgGTNDR 496
Cdd:cd10278 397 YEPFEVNYTAGQPYVGAT-----LAMYPGpGGHMGQFKAWDPVTGKTKWEIkeRFP---VWSGTLATAGGLVFY-GTLDG 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 497 MFRAFHAKTGELLWEQKTNSGIVGMPVAYEVDGTQYIAVQSGWG--------VDAQRIQDAL-ATQNNVGVENNVPQGGV 567
Cdd:cd10278 468 WFKAVDAKTGKLLWKFKLPSGIIGNPITYKHDGKQYVAVLSGVGgwagvgvaAGLRDPTAGLgAVGAFKDLPNYTQMGGT 547
|
....*.
gi 1046582657 568 VWVFAV 573
Cdd:cd10278 548 LYVFSL 553
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
44-540 |
7.55e-136 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 406.26 E-value: 7.55e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 44 GNWMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVVEGHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQ 123
Cdd:cd10279 1 GNWLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTNRGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 124 LP---DDLFQLHPTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEFG 200
Cdd:cd10279 81 VDresGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 201 VRGYVVAFDADTGKELWRTFTIPGPGEPGHE----------TWSGDDWKTG-GAPAWMTGNYDVETRTIYWGTGNAAPW- 268
Cdd:cd10279 161 VRGYVSAYDAETGKLVWRFYTVPGNPAKPFEhasleaaaatWWTGEWWRTGgGGTVWDSITYDPELDLLYIGTGNGSPWn 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 269 -----PGEthpGDNLYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIHPGRNAIFWVLERK 343
Cdd:cd10279 241 rkvrsPGG---GDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEIDGKPRKVLMHAPKNGFFYVLDRA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 344 peGIKYVAGWPFVYTDVWKGIEP-SGKPIVDPAHKPGIGKRVEFcPSLWGGKDWPSAAYSQNTRLVYVPANENfcgGFTG 422
Cdd:cd10279 318 --TGKLLSAEPFVPVNWATGIDLkTGRPIENPEARYTKGPKLVF-PGPLGAHNWHPMSYNPDTGLVYIPAQEI---PAVY 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 423 EKLPLVPGQL---W-----LGTKPEDIGLKVRPGATHFGELQAWDPATGKKVWSHNFPkSHLFGSVTVTAGDLVlVGGTN 494
Cdd:cd10279 392 EDDPGDFGYNplgWntgitPDATPPPAAAKRALRKATRGRLVAWDPVTQKAAWRVEHP-GPWNGGVLATAGNLV-FQGTA 469
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1046582657 495 DRMFRAFHAKTGELLWEQKTNSGIVGMPVAYEVDGTQYIAVQSGWG 540
Cdd:cd10279 470 DGELAAYDARTGEKLWSFDTGSGIVAAPMTYSVDGEQYVAVLAGWG 515
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
68-572 |
2.66e-99 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 308.38 E-value: 2.66e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 68 NVKNLVPVWTFSTGVVE--GHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPDDLFQ--LHPTNRGVGLWQD 143
Cdd:cd00216 3 NVFQLTPAWSFSTGDGGnrGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFEacCDLVNRGVAVWGG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 144 KLYLATTDDHVVALDAKTGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEFGVRGYVVAFDADTGKELWRTFTIP 223
Cdd:cd00216 83 KVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRFYLVM 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 224 G-----PGEPGHE------TWSGDDWKTGGAPAWMTGNYDVETRTIYWGTGNAAPW--PGETHPGDNLYSTSVLALDPDN 290
Cdd:cd00216 163 PdpnllPGKDSTVtdrntpTGDEHTWTSGGGTGWSSAAYDAELNLIYVGGGNPTPWnwGGNRTPGDNLYTSSIVAVNADT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 291 GKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIHPGRNAIFWVLERKpegikyvagwpfvytdvwkgiepSGKp 370
Cdd:cd00216 243 GEMKWQYQTTPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRR-----------------------NGE- 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 371 IVDPAHKPGIgkrvefcpslwggkdwpsaAYSQNTRLVYVPANenfcggftgeklplvpgqlwlgtkpediglkvrpgat 450
Cdd:cd00216 299 LVSARPLVPD-------------------SYDPDRELFYVPAN------------------------------------- 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 451 hfGELQAWDPATGKKVWSHnfPKSH-LFGSVTVTAGDLVLVgGTNDRMFRAFHAKTGELLWEQKTNSGIVGMPVAYEVDG 529
Cdd:cd00216 323 --GRIMALDPVTGVVVWEK--SELHpLLGGPLSTAGNLVFV-GTSDGYLKAYNADTGEKLWQQKVPSGFQAEPVTYEVDG 397
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1046582657 530 TQYIAVQSGWGVDAQRIQDALAtqnnvgVENNVPQGGVVWVFA 572
Cdd:cd00216 398 EQYVLIQAGGGGAFPLWGGMAD------LTRGTQMGGTVVVYK 434
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
46-538 |
7.82e-89 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 286.78 E-value: 7.82e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 46 WMLYRRTYDGQGYSPLDRINTSNVKNLVPVWTFSTGVVEGHQSP-------PIVNNGAMFITTPQGQVIALNAKTGDEYW 118
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWTYHTGDLPGPDGNegtfeatPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 119 RYKRQLPDDLFQLHPTNRGVGLWQDK---------LYLATTDDHVVALDAKTGKVLWD----------TKVQDYRKGQY- 178
Cdd:cd10280 81 RFDPKAGADAAPGHQTCRGVSYWEDGaaaaacarrIFFGTGDARLIALDARTGKPCPDfgdngvvdlrEGLGRVKPGFYs 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 179 LTLMPLIVDGKVIVGGSGGEF----GVRGYVVAFDADTGKELWrTF-TIPGPGEPGHETwsGDDWKT-GGAPAWMTGNYD 252
Cdd:cd10280 161 STSPPTVYGDLVIVGSAVADNqavdAPSGVIRAFDVRTGKLVW-AFdTIPPPGEAGPDT--AGAWYTrGGPNVWAGMSAD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 253 VETRTIYWGTGNAAP--WpGETHPGDNLYSTSVLALDPDNGKIKSYFQYHQNDSWDWDEVDAPMLVDLQRDGRTIKSLIH 330
Cdd:cd10280 238 EKLGLVYLPTGSATPdfY-GGDRPGDNLFANSLVALDAATGKRRWHFQTVHHDLWDYDLPAQPTLVDVPRDGKTVPAVAQ 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 331 PGRNAIFWVLER---KPegikyvaGWPFVYTDVWKGIEP----------SGKPI--------------VDPAHK------ 377
Cdd:cd10280 317 PTKQGFVFVLDRrtgKP-------LWPVEERPVPQGDVPgertsptqpfPTLPPpfarqglteddmwgATPFDQlacriq 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 378 ------------PGIGKRVEFcPSLWGGKDWPSAAYSQNTRLVYVPANEnfcggftgekLPLVpgqLWLGTKPEDIGLKV 445
Cdd:cd10280 390 frslryeglftpPSLDGTLIF-PGNDGGANWGGAAVDPERGILYVNSNR----------LPFV---IQLVPRAPGDPAGV 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 446 RPGATH----------------------------------FGELQAWDPATGKKVWSHNF-------PKSHLF------- 477
Cdd:cd10280 456 AGGGEGggggggpspqagtpygvgrgrflsplglpcqappWGTLTAIDLNTGKILWQVPLgtvpdlgPKGIPLpiptgtp 535
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046582657 478 ---GSVtVTAGDLVLVGGTNDRMFRAFHAKTGELLWEQKTNSGIVGMPVAYEVDGTQYIAVQSG 538
Cdd:cd10280 536 nlgGPV-VTAGGLVFIAATQDNYLRAFDKATGKELWEARLPAGGQATPMTYEVDGKQYVVIAAG 598
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
76-293 |
3.95e-19 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 89.31 E-value: 3.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 76 WTFSTGVVEGH--QSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKrqLPDDLFQLhptnRGVGLWQDKLYLATTDDH 153
Cdd:cd10276 18 WSKSVGNGGMAgiDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETS--LSGKGFLG----GTPAVGNGKIFVGTESGY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 154 VVALDAKTGKVLWDTKVQDyrkGQYLTlMPLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELW-RTFTIPGPGEPGHET 232
Cdd:cd10276 92 LYALDAKDGSELWRTEVSD---SQLLS-PPTYADGKIYVGTGDGR------LYYCNAETGKVVWnRTSTAPELSLRGGAA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046582657 233 WSGDDWKTGGAPAWMTGNY-DVETRTIYWGTGNAAPWPGETHP------------GDNLYSTS----VLALDPDNGKI 293
Cdd:cd10276 162 PVGAYDVVFVGDGNGTVVAlNTGTGVDIWEFSVSEPRGRTELPrmidssvtyvvvGGYLYSTSyqgyLVALDFESGQF 239
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
72-218 |
1.10e-17 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 84.87 E-value: 1.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 72 LVPVWTFSTGVVEGHQS---PPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKrqLPDDLfqlhptNRGVGLWQDKLYLA 148
Cdd:COG1520 32 VKQLWSASVGDGVGKGYsrlAPAVAGDRVYAADADGRVAALDAATGKELWRVD--LGEPL------SGGVGADGGLVVVG 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 149 TTDDHVVALDAKTGKVLWDTKVqdyrKGQYLTlMPLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELWR 218
Cdd:COG1520 104 TEDGEVIALDADDGEELWRARL----SSEVLA-APAVAGGRVVVRTGDGR------VYALDAATGERLWS 162
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
75-293 |
1.95e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 78.98 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 75 VWTFSTGvvEGHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKrqlPDDLFQLHPTNRGvglwqDKLYLATTDDHV 154
Cdd:pfam13360 16 LWRVDLE--TGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQT---LSGEVLGAPLVAG-----GRVFVVAGDGSL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 155 VALDAKTGKVLWdtkvQDYRKGQYLTLM----PLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELWRTfTIPGP----- 225
Cdd:pfam13360 86 IALDAADGRRLW----SYQRSGEPLALRssgsPAVVGDTVVAGFSSGK------LVALDPATGKVRWEA-PLAAPrgtne 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 226 --------GEP---GHETWSGDDWKTGGAPAWMTGNYdVETRTIYWGTGNAApwpgethPGDNLYSTS----VLALDPDN 290
Cdd:pfam13360 155 lerlvditGTPvvaGGRVFASAYQGRLVAFDAATGRR-LWTREISGPNGPIL-------DGDLLYVVSddgeLYALDRAT 226
|
...
gi 1046582657 291 GKI 293
Cdd:pfam13360 227 GAV 229
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
75-217 |
2.55e-14 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 74.58 E-value: 2.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 75 VWTFSTGVVEGH-QSP--PIVNNGAMFITTPQGQVIALNAKTGDEYWRykRQLPDDLfqlhptNRGVGLWQDKLYLATTD 151
Cdd:TIGR03300 43 VWSASVGDGVGHyYLRlqPAVAGGKVYAADADGTVAALDAETGKRLWR--VDLDERL------SGGVGADGGLVFVGTEK 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 152 DHVVALDAKTGKVLWDTKVQdyrkGQYLTlMPLIVDGKVIVGGSggefgvRGYVVAFDADTGKELW 217
Cdd:TIGR03300 115 GEVIALDAEDGKELWRAKLS----SEVLS-PPLVANGLVVVRTN------DGRLTALDAATGERLW 169
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
59-218 |
6.38e-13 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 70.73 E-value: 6.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 59 SPLDRINtsNVKNLVPVWTFSTGVVEGH---QSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPDDLFQLHPTN 135
Cdd:PRK11138 33 SPLPQVE--NQFTPTTVWSTSVGDGVGDyysRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 136 R---GVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVqdyrKGQYLTlMPLIVDGKVIVGGSggefgvRGYVVAFDADT 212
Cdd:PRK11138 111 LlsgGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV----AGEALS-RPVVSDGLVLVHTS------NGMLQALNESD 179
|
....*.
gi 1046582657 213 GKELWR 218
Cdd:PRK11138 180 GAVKWT 185
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
88-219 |
1.22e-12 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 69.46 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 88 SPPIVNNGAMFITTPQGQVIALNAKTGDEYWryKRQLPddlfqlhpTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWd 167
Cdd:COG1520 227 GTPVVDGGVVYAVAYQGRLAALDLRSGRVLW--SRDLS--------SYTGLAVDGNNLYVTDDDGRVWALDRRNGAELW- 295
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1046582657 168 tkVQDYRKGQYLTlMPLIVDGKVIVGGSggefgvRGYVVAFDADTGKELWRT 219
Cdd:COG1520 296 --KQDALLYRGLT-APVVLGDYVVVGDF------EGYLHWLSRDDGSLVARL 338
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
88-218 |
2.95e-12 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 68.30 E-value: 2.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 88 SPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPddlfQLhpTNRGVG---LWQDKLYLATTDDHVVALDAKTGKV 164
Cdd:COG1520 131 AAPAVAGGRVVVRTGDGRVYALDAATGERLWSYQRPVP----AL--TLRGTSspvIVGGAVLVGFANGKLVALDLANGQP 204
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 165 LWDTKV------------QDyrkgqyLTLMPLIVDGKVIVGgsggefGVRGYVVAFDADTGKELWR 218
Cdd:COG1520 205 LWEQRVaqprgrtelerlVD------VDGTPVVDGGVVYAV------AYQGRLAALDLRSGRVLWS 258
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
74-219 |
7.00e-12 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 65.50 E-value: 7.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 74 PVWtfSTGVVEGHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPDDLFQLHPTNRGVGlwqDKLYLATTDDH 153
Cdd:pfam13360 55 LLW--RQTLSGEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVG---DTVVAGFSSGK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 154 VVALDAKTGKVLWDTKVQDYRKGQYLTLM------PLIVDGKV-IVGGSGGE---------------------------- 198
Cdd:pfam13360 130 LVALDPATGKVRWEAPLAAPRGTNELERLvditgtPVVAGGRVfASAYQGRLvafdaatgrrlwtreisgpngpildgdl 209
|
170 180
....*....|....*....|....
gi 1046582657 199 -FGV--RGYVVAFDADTGKELWRT 219
Cdd:pfam13360 210 lYVVsdDGELYALDRATGAVVWKT 233
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
88-221 |
7.12e-12 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 67.26 E-value: 7.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 88 SPPIVNNGAMFITTPQGQVIALNAKTGDEYWryKRQlpddlfqlHPTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWD 167
Cdd:TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLW--KRD--------ASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1046582657 168 tkvQDYRKGQYLTlMPLIVDGKVIVGGSggefgvRGYVVAFDADTGKELWRTFT 221
Cdd:TIGR03300 305 ---NDELKYRQLT-APAVLGGYLVVGDF------EGYLHWLDRDDGSFVARLKT 348
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
90-218 |
1.58e-11 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 66.11 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 90 PIVNNGAMFITTPQGQVIALNAKTGDEYWRykRQLPDDLFQLHPTNrgvglwQDKLYLATTDDHVVALDAKTGKVLWDTK 169
Cdd:TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWR--AKLSSEVLSPPLVA------NGLVVVRTNDGRLTALDAATGERLWTYS 172
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1046582657 170 vqdyRKGQYLTLM----PLIVDGKVIVGGSGGefgvrgYVVAFDADTGKELWR 218
Cdd:TIGR03300 173 ----RVTPPLTLRgsasPVIADGGVLVGFAGG------KLVALDLQTGQPLWE 215
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
75-217 |
1.75e-11 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 65.82 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 75 VWTFSTGVVEGHQSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKrqLPDDLFQLHPTnrgvgLWQDKLYLATTDDHV 154
Cdd:cd10276 61 IWETSLSGKGFLGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTE--VSDSQLLSPPT-----YADGKIYVGTGDGRL 133
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046582657 155 VALDAKTGKVLW----DTKVQDYRKGQYltlmPLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELW 217
Cdd:cd10276 134 YYCNAETGKVVWnrtsTAPELSLRGGAA----PVGAYDVVFVGDGNGT------VVALNTGTGVDIW 190
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
88-217 |
2.34e-11 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 65.72 E-value: 2.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 88 SPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPddlfQLhpTNRGVG---LWQDKLYLATTDDHVVALDAKTGKV 164
Cdd:TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTP----PL--TLRGSAspvIADGGVLVGFAGGKLVALDLQTGQP 212
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1046582657 165 LWDTKVQDYRKGQYLTLMpLIVDGKVIVGGsGGEFGV--RGYVVAFDADTGKELW 217
Cdd:TIGR03300 213 LWEQRVALPKGRTELERL-VDVDGDPVVDG-GQVYAVsyQGRVAALDLRSGRVLW 265
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
102-218 |
3.35e-11 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 63.58 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 102 PQGQVIALNAKTGDEYWRYKRQLPddlfqlhpTNRGVGLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQdyrkGQYLTl 181
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLETG--------LGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLS----GEVLG- 67
|
90 100 110
....*....|....*....|....*....|....*..
gi 1046582657 182 MPLIVDGKVIVGGSGgefgvrGYVVAFDADTGKELWR 218
Cdd:pfam13360 68 APLVAGGRVFVVAGD------GSLIALDAADGRRLWS 98
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
126-219 |
2.00e-10 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 62.52 E-value: 2.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 126 DDLFQLHPTnrgvgLWQDKLYLATTDDHVVALDAKTGKVLWDTKVqdyrkGQYLTLMPLIVDGKVIVGGSGGEfgvrgyV 205
Cdd:COG1520 46 KGYSRLAPA-----VAGDRVYAADADGRVAALDAATGKELWRVDL-----GEPLSGGVGADGGLVVVGTEDGE------V 109
|
90
....*....|....
gi 1046582657 206 VAFDADTGKELWRT 219
Cdd:COG1520 110 IALDADDGEELWRA 123
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
126-219 |
9.70e-10 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 60.72 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 126 DDLFQLHPTNRGvglwqDKLYLATTDDHVVALDAKTGKVLWDTKVqdyrkGQYLTLMPLIVDGKVIVGGSGGEfgvrgyV 205
Cdd:TIGR03300 54 HYYLRLQPAVAG-----GKVYAADADGTVAALDAETGKRLWRVDL-----DERLSGGVGADGGLVFVGTEKGE------V 117
|
90
....*....|....
gi 1046582657 206 VAFDADTGKELWRT 219
Cdd:TIGR03300 118 IALDAEDGKELWRA 131
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
449-533 |
3.18e-09 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 58.88 E-value: 3.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 449 ATHFGELQAWDPATGKKVWSHNFPKSHLFGSvTVTAGDLVLVGGTNDRMFRAFHAKTGELLWEQKTNSGIVGMPVAYeVD 528
Cdd:cd10276 44 ADANGQVSAFNATTGKIIWETSLSGKGFLGG-TPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTY-AD 121
|
....*
gi 1046582657 529 GTQYI 533
Cdd:cd10276 122 GKIYV 126
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
87-260 |
1.14e-08 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 57.34 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 87 QSPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLPDDlfqlhpTNRGVGLWQ-DKLYLATTDD--HVVALDAKTGK 163
Cdd:cd10276 114 LSPPTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPEL------SLRGGAAPVgAYDVVFVGDGngTVVALNTGTGV 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 164 VLWDTKVQDYR-------------------------------------KGQYLTL--------MPLIVDGKVIVGGSGGe 198
Cdd:cd10276 188 DIWEFSVSEPRgrtelprmidssvtyvvvggylystsyqgylvaldfeSGQFLWSrkasggtsTSTDANGRVYVGDGEG- 266
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 199 fgvrgYVVAFDADTGKELWRTftipgpgepghetwSGDDWKTGGAPAWMTGNY----DVETRTIYW 260
Cdd:cd10276 267 -----SLYCLDASTGDELWSQ--------------TVLLGRVLSSPAIYVGVYiyvtDNAEGYLYC 313
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
449-526 |
4.17e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 55.59 E-value: 4.17e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046582657 449 ATHFGELQAWDPATGKKVWSHNFpKSHLFGSVTVtAGDLVLVGGTNDRMFrAFHAKTGELLWEQKTNSGIVGMPVAYE 526
Cdd:COG1520 63 ADADGRVAALDAATGKELWRVDL-GEPLSGGVGA-DGGLVVVGTEDGEVI-ALDADDGEELWRARLSSEVLAAPAVAG 137
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
426-525 |
4.70e-07 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 52.24 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 426 PLVPGQLW---LGTKPEDIGLKVRPG--------ATHFGELQAWDPATGKKVWSHNFpKSHLFGSVTVtAGDLVLVGgTN 494
Cdd:TIGR03300 37 TVKVDQVWsasVGDGVGHYYLRLQPAvaggkvyaADADGTVAALDAETGKRLWRVDL-DERLSGGVGA-DGGLVFVG-TE 113
|
90 100 110
....*....|....*....|....*....|.
gi 1046582657 495 DRMFRAFHAKTGELLWEQKTNSGIVGMPVAY 525
Cdd:TIGR03300 114 KGEVIALDAEDGKELWRAKLSSEVLSPPLVA 144
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
163-219 |
8.19e-07 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 51.35 E-value: 8.19e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1046582657 163 KVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELWRT 219
Cdd:COG1520 33 KQLWSASVGDGVGKGYSRLAPAVAGDRVYAADADGR------VAALDAATGKELWRV 83
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
161-219 |
3.88e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 49.16 E-value: 3.88e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1046582657 161 TGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSGGEfgvrgyVVAFDADTGKELWRT 219
Cdd:TIGR03300 39 KVDQVWSASVGDGVGHYYLRLQPAVAGGKVYAADADGT------VAALDAETGKRLWRV 91
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
88-218 |
5.18e-06 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 48.77 E-value: 5.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 88 SPPIVNNGAMFITTPQGQVIALNAKTGDEYWRYKRQLP--------------------DDLFQLHPT--NRGVGLWQ--- 142
Cdd:PRK11138 154 SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPsltlrgesapatafggaivgGDNGRVSAVlmEQGQLIWQqri 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 143 -----------------------DKLYLATTDDHVVALDAKTGKVLWdtkvqdyrKGQYLTLMPLIVDGKVIvggsggeF 199
Cdd:PRK11138 234 sqptgateidrlvdvdttpvvvgGVVYALAYNGNLVALDLRSGQIVW--------KREYGSVNDFAVDGGRI-------Y 298
|
170 180
....*....|....*....|.
gi 1046582657 200 GV--RGYVVAFDADTGKELWR 218
Cdd:PRK11138 299 LVdqNDRVYALDTRGGVELWS 319
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
453-543 |
1.40e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 46.63 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 453 GELQAWDPATGKKVWSHNFpkSHLFGSVTVTAGDLVLVGGTNDRMFrAFHAKTGELLWEQKTNSGIVGMPvayEVDGTQY 532
Cdd:pfam13360 3 GVVTALDAATGAELWRVDL--ETGLGGGVAVDGGRLFVATGGGQLV-ALDAATGKLLWRQTLSGEVLGAP---LVAGGRV 76
|
90
....*....|....
gi 1046582657 533 IAV---QSGWGVDA 543
Cdd:pfam13360 77 FVVagdGSLIALDA 90
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
449-548 |
1.52e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 46.63 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 449 ATHFGELQAWDPATGKKVWSHNFPkSHLFGSVTVTAGDLVLVggTNDRMFRAFHAKTGELLWEQKTNSGIVGM--PVAYE 526
Cdd:pfam13360 39 ATGGGQLVALDAATGKLLWRQTLS-GEVLGAPLVAGGRVFVV--AGDGSLIALDAADGRRLWSYQRSGEPLALrsSGSPA 115
|
90 100
....*....|....*....|..
gi 1046582657 527 VDGTQYIAVQSGWGVDAQRIQD 548
Cdd:pfam13360 116 VVGDTVVAGFSSGKLVALDPAT 137
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
87-214 |
2.64e-05 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 46.85 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 87 QSPPIVNNGAMFITTPQGQVIALNAKTGDEYWryKRQLP--DDLFQLHptnrgvglwqDKLYLATTDDHVVALDAKTGKV 164
Cdd:PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVW--KREYGsvNDFAVDG----------GRIYLVDQNDRVYALDTRGGVE 316
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1046582657 165 LWDTKVQDYRKgqyLTlMPLIVDGKVIVGGSggefgvRGYVVAFDADTGK 214
Cdd:PRK11138 317 LWSQSDLLHRL---LT-APVLYNGYLVVGDS------EGYLHWINREDGR 356
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
453-535 |
3.33e-05 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 46.46 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 453 GELQAWDPATGKKVWSH--NFPKSHLFGSVTVT-AGDLVLVGGTNDRMFrAFHAKTGELLWEQKTNSG-----------I 518
Cdd:TIGR03300 155 GRLTALDAATGERLWTYsrVTPPLTLRGSASPViADGGVLVGFAGGKLV-ALDLQTGQPLWEQRVALPkgrtelerlvdV 233
|
90
....*....|....*..
gi 1046582657 519 VGMPVayeVDGTQYIAV 535
Cdd:TIGR03300 234 DGDPV---VDGGQVYAV 247
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
449-526 |
4.34e-05 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 46.08 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 449 ATHFGELQAWDPATGKKVWSHNFPKSHLF----------GSVTVtAGDLVLVGGTNDRMFrAFHAKTGELLWEQKTNSGI 518
Cdd:PRK11138 75 ADRAGLVKALDADTGKEIWSVDLSEKDGWfsknksallsGGVTV-AGGKVYIGSEKGQVY-ALNAEDGEVAWQTKVAGEA 152
|
....*...
gi 1046582657 519 VGMPVAYE 526
Cdd:PRK11138 153 LSRPVVSD 160
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
148-208 |
1.35e-04 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 44.88 E-value: 1.35e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 148 ATTDDHVVALDAKTGKVLWDTKVqdyRKGQYLTLMPLIVDGK---VIVGGSGGEFGVR--GYVVAF 208
Cdd:cd10280 552 ATQDNYLRAFDKATGKELWEARL---PAGGQATPMTYEVDGKqyvVIAAGGHGSLGTKrgDSVIAY 614
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
453-535 |
1.62e-04 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 44.03 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 453 GELQAWDPATGKKVWSHNFPKSHLF---GSVTVTAGDLVLVGGTNDRMFrAFHAKTGELLWEQK--TNSG---------I 518
Cdd:COG1520 147 GRVYALDAATGERLWSYQRPVPALTlrgTSSPVIVGGAVLVGFANGKLV-ALDLANGQPLWEQRvaQPRGrtelerlvdV 225
|
90
....*....|....*..
gi 1046582657 519 VGMPVayeVDGTQYIAV 535
Cdd:COG1520 226 DGTPV---VDGGVVYAV 239
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
18-197 |
3.11e-04 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 43.09 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 18 FSIAAGAGPIENYSPVTADrlknPEPGNWMLYRRTYDGQGYSpldrINTSNVKNLVPVWTfstgvvEGHQSPPIVNNGAM 97
Cdd:cd10276 194 VSEPRGRTELPRMIDSSVT----YVVVGGYLYSTSYQGYLVA----LDFESGQFLWSRKA------SGGTSTSTDANGRV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 98 FITTPQGQVIALNAKTGDEYWRY----KRQLPDDLFqlhptnrgvgLWQDKLYLATTDDHVVALDAKTGKVLWDTKVQDY 173
Cdd:cd10276 260 YVGDGEGSLYCLDASTGDELWSQtvllGRVLSSPAI----------YVGVYIYVTDNAEGYLYCLKDNDGLTVARVEVDY 329
|
170 180
....*....|....*....|....
gi 1046582657 174 rkGQYLTLMPLIVDGKVIVGGSGG 197
Cdd:cd10276 330 --SQYILQGPAVSDGWLYYGTDDG 351
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
138-166 |
3.42e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 38.28 E-value: 3.42e-04
10 20
....*....|....*....|....*....
gi 1046582657 138 VGLWQDKLYLATTDDHVVALDAKTGKVLW 166
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILW 30
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
89-121 |
4.68e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 37.90 E-value: 4.68e-04
10 20 30
....*....|....*....|....*....|...
gi 1046582657 89 PPIVNNGAMFITTPQGQVIALNAKTGDEYWRYK 121
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
453-569 |
7.71e-04 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 41.23 E-value: 7.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 453 GELQAWDPATGKKVWSH--NFPKSHLFGSVTVT-AGDLVLVGGTNDRMfRAFHAKTGELLWEQKTNSGIVGMPVAYEVDG 529
Cdd:pfam13360 83 GSLIALDAADGRRLWSYqrSGEPLALRSSGSPAvVGDTVVAGFSSGKL-VALDPATGKVRWEAPLAAPRGTNELERLVDI 161
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1046582657 530 TQYIAVQSGwGVDAqriqdalATQNNVGVENNVPQGGVVW 569
Cdd:pfam13360 162 TGTPVVAGG-RVFA-------SAYQGRLVAFDAATGRRLW 193
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
453-515 |
1.77e-03 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 41.07 E-value: 1.77e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 453 GELQAWDPATGKKVWshnfpKSHLFGSVT---VTAGDLVLVGgTNDRMFRAFHAKTGELLWEQKTN 515
Cdd:TIGR03300 115 GEVIALDAEDGKELW-----RAKLSSEVLsppLVANGLVVVR-TNDGRLTALDAATGERLWTYSRV 174
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
143-172 |
1.87e-03 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 36.02 E-value: 1.87e-03
10 20 30
....*....|....*....|....*....|
gi 1046582657 143 DKLYLATTDDHVVALDAKTGKVLWDTKVQD 172
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGG 30
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
161-294 |
1.91e-03 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 40.68 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 161 TGKVLWDTKVQDYRKGQYLTLMPLIVDGKVIVGGSggefgvRGYVVAFDADTGKELWRTftipgpgepghETWSGDDWKT 240
Cdd:PRK11138 43 TPTTVWSTSVGDGVGDYYSRLHPAVAYNKVYAADR------AGLVKALDADTGKEIWSV-----------DLSEKDGWFS 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046582657 241 GGAPAWMTGNYDVETRTIYWGTGNAAPWPGETHPGDNLYSTSV------------------------LALDPDNGKIK 294
Cdd:PRK11138 106 KNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVagealsrpvvsdglvlvhtsngmlQALNESDGAVK 183
|
|
| GH64-LPHase-like |
cd09216 |
glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like; ... |
191-344 |
4.69e-03 |
|
glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like; This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-glucanase B from Lysobacter enzymogenes Strain N4-7. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Sometimes these two domains are found associated with other domains such as in the Catenulispora acidiphila DSM 44928 carbohydrate binding family 6 protein in which they are positioned N-terminal of a carbohydrate binding module, family 6 (CBM_6) domain. In the Cellulosimicrobium cellulans, glucan endo-1,3-beta-glucosidase, they are positioned N-terminal of a RICIN, carbohydrate-binding domain.
Pssm-ID: 185755 [Multi-domain] Cd Length: 353 Bit Score: 39.36 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 191 IVGGSGGEFGVRGYVVAFDADTGKELWRTftipgPGEPGHETWSGDDWKTGGAPAWMTGNYDVETRT---------IYWG 261
Cdd:cd09216 5 ITNNSGRNNQIYLYVVGTDLQTGRQGWVD-----ADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTvlpprmsgrIYFS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046582657 262 TGNAAPWPGETHPGdnLYSTSVLA-LDPDNGKIKSYFQYHQNDSWDW------DEVDAPMLVDLQR-DGR--TIKSLIHP 331
Cdd:cd09216 80 LGSKLRFKVVTNPA--LVQPAGWNpSDPNFNILHDWVEFTFNDAGLFcnttqvDMFSAPLAIGLRGaDGRdqTTGTLKPG 157
|
170
....*....|...
gi 1046582657 332 GRNAIFWVLERKP 344
Cdd:cd09216 158 GRDAVFDALSGQP 170
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
450-513 |
5.44e-03 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 39.24 E-value: 5.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046582657 450 THFGELQAWDPATGKKVWSH--NFPKSHLFGSVTVTAGDLVLVGGTNDRMFRAFHAKTGELLWEQK 513
Cdd:cd10276 128 TGDGRLYYCNAETGKVVWNRtsTAPELSLRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFS 193
|
|
| |
