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Conserved domains on  [gi|1037396469|gb|ANM19885|]
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sugar ABC transporter permease protein (plasmid) [Rhizobium sp. N541]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-278 3.24e-76

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 233.45  E-value: 3.24e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469   2 KSRSQSLLMRRIALHAALAPLAVIWLFPLWMMFVFSTMPDNGIFSPDIVLWPSTNFIENFKNLQADTDFVGAMVISVGVA 81
Cdd:COG0395     4 TARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  82 IIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVaREFRLANTWVALIVPPLF--NSLGVLF 159
Cdd:COG0395    84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF-RQLGLLNTYWGLILPYLAfgLPFGIFL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 160 MRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLT 239
Cdd:COG0395   163 LRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1037396469 240 KVSWGGIMAGAVLLTAPILVIFVALQRHFIAGIAAGAIK 278
Cdd:COG0395   243 GTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-278 3.24e-76

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 233.45  E-value: 3.24e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469   2 KSRSQSLLMRRIALHAALAPLAVIWLFPLWMMFVFSTMPDNGIFSPDIVLWPSTNFIENFKNLQADTDFVGAMVISVGVA 81
Cdd:COG0395     4 TARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  82 IIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVaREFRLANTWVALIVPPLF--NSLGVLF 159
Cdd:COG0395    84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF-RQLGLLNTYWGLILPYLAfgLPFGIFL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 160 MRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLT 239
Cdd:COG0395   163 LRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1037396469 240 KVSWGGIMAGAVLLTAPILVIFVALQRHFIAGIAAGAIK 278
Cdd:COG0395   243 GTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
27-272 2.53e-30

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 114.83  E-value: 2.53e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  27 LFPLWMMFVFSTMPDNGIFSPDIVLWPSTNFIENFKNL------QADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALA 100
Cdd:PRK10973   24 LFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIwvngvgNNSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 101 RYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAReFRLANTWVALIVPPLFNSLGVLFMRQSFSMMPGELFDAARVEGV 180
Cdd:PRK10973  104 WFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIAN-LKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGA 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 181 KEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLI--GLTKVSWGGIMAGAVLLTAPIL 258
Cdd:PRK10973  183 SPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIatGEGTTEWNQVMAAMLLTLIPPV 262

                         250
                  ....*....|....
gi 1037396469 259 VIFVALQRHFIAGI 272
Cdd:PRK10973  263 VIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-258 1.78e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  74 MVISVGVAIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAREFRLAN-----TWVALIV 148
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIlpglgLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 149 PPLFNSLGVLFMRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTA 228
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1037396469 229 PVALGTLIGLTKVSWGGIMAGAVLLTAPIL 258
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 101-272 1.04e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.06  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 101 RYRFVGRSIVIAIIIGTITLPFSVVVIP-QFIMVAREFRLANTWVALIVPPLFNSLGVLFMRQSFSMMPGELFDAARVEG 179
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILlVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 180 VKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLTkvSWGGIMAGAVLLTAPILV 259
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP--EIQGPVLAAALILLLLNL 168

                         170
                  ....*....|...
gi 1037396469 260 IFVALQRHFIAGI 272
Cdd:pfam00528 169 LVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-278 3.24e-76

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 233.45  E-value: 3.24e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469   2 KSRSQSLLMRRIALHAALAPLAVIWLFPLWMMFVFSTMPDNGIFSPDIVLWPSTNFIENFKNLQADTDFVGAMVISVGVA 81
Cdd:COG0395     4 TARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  82 IIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVaREFRLANTWVALIVPPLF--NSLGVLF 159
Cdd:COG0395    84 VVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF-RQLGLLNTYWGLILPYLAfgLPFGIFL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 160 MRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLT 239
Cdd:COG0395   163 LRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQY 242

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1037396469 240 KVSWGGIMAGAVLLTAPILVIFVALQRHFIAGIAAGAIK 278
Cdd:COG0395   243 GTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-278 1.21e-38

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 136.82  E-value: 1.21e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469   1 MKSRSQSLLMRRIALHAALAPLAVIWLFPLWMMFVFSTMPDNGIFSPDivLWPSTNFIENFKNLQADTDFVGAMVISVGV 80
Cdd:COG3833     4 RKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSS--LIPENFTLENYKKLFTETPFLRWFLNSLIV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  81 AIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAReFRLANTWVALIVPPLFNSLGVLF- 159
Cdd:COG3833    82 AVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSA-LGLLNTLLGLILVYLGGAIPFNTw 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 160 -MRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLI-G 237
Cdd:COG3833   161 lMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVsD 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1037396469 238 LTKVSWGGIMAGAVLLTAPILVIFVALQRHFIAGIAAGAIK 278
Cdd:COG3833   241 QRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
27-272 2.53e-30

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 114.83  E-value: 2.53e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  27 LFPLWMMFVFSTMPDNGIFSPDIVLWPSTNFIENFKNL------QADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALA 100
Cdd:PRK10973   24 LFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIwvngvgNNSAPFGRMLLNSFVMAFSITVGKITVSMLSAFAIV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 101 RYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAReFRLANTWVALIVPPLFNSLGVLFMRQSFSMMPGELFDAARVEGV 180
Cdd:PRK10973  104 WFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIAN-LKMLDSYAGLTLPLMASATATFLFRQFFMTLPDELVEAARIDGA 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 181 KEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLI--GLTKVSWGGIMAGAVLLTAPIL 258
Cdd:PRK10973  183 SPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIatGEGTTEWNQVMAAMLLTLIPPV 262

                         250
                  ....*....|....
gi 1037396469 259 VIFVALQRHFIAGI 272
Cdd:PRK10973  263 VIVLAMQRAFVRGL 276
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 10-266 4.07e-13

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 67.44  E-value: 4.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  10 MRRIALHAALAPLAVIWLFPLWMMFVFStmpdngIFSPDIVLWPSTNF-IENFKNLQADTDFVGAMVISVGVAIIYTFLS 88
Cdd:COG1177     4 LGRLLLRLFLALVLLFLYLPILVLVLYS------FNDSWFLTFPPEGFtLRWYAELFSDPRLLDALLNSLLIALLSTLLA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  89 VMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAReFRLANTWVALIVPPLFNSL--GVLFMRQSFSM 166
Cdd:COG1177    78 TVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA-LGLSGGLWGLILAHVVFTLpfVVLVVLARLQG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 167 MPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSkPGMMTAPVALGTLI--GLTKVswg 244
Cdd:COG1177   157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG-PGVTTLPVYIYSMIrrGISPE--- 232

                         250       260
                  ....*....|....*....|..
gi 1037396469 245 gIMAGAVLLTAPILVIFVALQR 266
Cdd:COG1177   233 -INALSTLLILLSLLLLLLAER 253
malG PRK10998
maltose ABC transporter permease MalG;
27-278 3.36e-11

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 62.42  E-value: 3.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  27 LFPLWMMFVFSTMPDN---GIFSPDIVLWPSTNFIENFKNLQADTDFVGA-------MVISVGVAIIYTFLSVMLTSMAG 96
Cdd:PRK10998   28 MFPLLMVIAISLREGNfatGSLIPEQISWEHWKLALGFSVEHADGRVTPPpfpvllwLWNSVKVAGITAIGIVALSTTCA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  97 WALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAR-----EFRLANTWVALIVPPLFN-SLGVLFMRQSFSMMPGE 170
Cdd:PRK10998  108 YAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRlgqyiPFIGLNTHGGVIFAYLGGiALHVWTIKGYFETIDSS 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 171 LFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLTKVSWGGIMAGA 250
Cdd:PRK10998  188 LEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAA 267

                         250       260
                  ....*....|....*....|....*...
gi 1037396469 251 VLLTAPILVIFVALQRHFIAGIAAGAIK 278
Cdd:PRK10998  268 VLSAIPITVVFLLAQRWLVGGLTAGGVK 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-258 1.78e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  74 MVISVGVAIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAREFRLAN-----TWVALIV 148
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGIlpglgLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 149 PPLFNSLGVLFMRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTA 228
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1037396469 229 PVALGTLIGLTKVSWGGIMAGAVLLTAPIL 258
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
24-213 3.24e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 54.01  E-value: 3.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  24 VIWLFPLWMMFVFSTMPdngIFSpdiVLWPS-TNFIENFKNLQADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALARY 102
Cdd:COG1178    11 LLLLLLALLLALLVLLP---LLA---LLLRAfTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLART 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 103 RFVGRSIVIAIIigtiTLPFsvvVIPQFIMV----------------------AREFRLANTWVALIVPPLFN-SLGVLF 159
Cdd:COG1178    85 DFPGRRLLRWLL----LLPL---ALPPYVVAlawialfgpngllntllralfgLEPPDIYGLGGIILVLVLFNyPYVYLL 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1037396469 160 MRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNY 213
Cdd:COG1178   158 LRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADF 211
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
59-266 7.34e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.86  E-value: 7.34e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  59 ENFKNLQADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAR--E 136
Cdd:COG1178   325 DNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplP 404

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 137 FRLANTWVALIVpplfnSLGVLFM-------RQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLAS 209
Cdd:COG1178   405 LLLYGTLAILVL-----AYVVRFLpfalrslEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1037396469 210 WNNY-----LWPllinskPGMMTAPVALGTLIGltKVSWGGIMAGAVLLTAPILVIFVALQR 266
Cdd:COG1178   480 MKELsatllLRP------PGFETLAVLIYQLAS--SGRYGEAAALALLLVLVSLLPVLLLER 533
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 66-206 1.39e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 51.29  E-value: 1.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  66 ADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVV------------VIPQFIMV 133
Cdd:COG0555    48 TSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAgiallllfgpngWLGQLLAP 127

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1037396469 134 ArEFRLANTWVALIVPPLFNSLG--VLFMRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILF 206
Cdd:COG0555   128 L-GIKVAFTPLGIVLAQTFVSLPfvVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAF 201
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-268 4.48e-07

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 50.15  E-value: 4.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469   1 MKSRSQSLLMRRIALHAALAPLAVIWLFPLWMMFVFSTMPDNGIFSPDIVLWpstnfIENFKNLQADTDFVGAMVISVGV 80
Cdd:COG1176     1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFT-----LENYARLFTDPLYLKVLLRTLWI 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  81 AIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIigtiTLPF--SVVV--------------IPQFIM----VAREFRLA 140
Cdd:COG1176    76 ALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLV----ILPFwtSFLVrtyawivllgrnglLNSLLLalglIDEPLRLL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 141 NTWVALIVPPLFNSL--GVLFMRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLL 218
Cdd:COG1176   152 YTEFAVVIGLVYVYLpfMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPAL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1037396469 219 INSKPGMMtapvaLGTLI---GLTKVSWGGIMAGAVLLTAPILVIFVALQRHF 268
Cdd:COG1176   232 LGGGKVLM-----IGNLIyqqFLSALNWPLAAALAVVLLLIVLLVLLLYLRLL 279
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 101-272 1.04e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.06  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 101 RYRFVGRSIVIAIIIGTITLPFSVVVIP-QFIMVAREFRLANTWVALIVPPLFNSLGVLFMRQSFSMMPGELFDAARVEG 179
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILlVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 180 VKEWQIFLRIALPLARPTMAALAIILFLASWNNYLWPLLINSKPGMMTAPVALGTLIGLTkvSWGGIMAGAVLLTAPILV 259
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP--EIQGPVLAAALILLLLNL 168

                         170
                  ....*....|...
gi 1037396469 260 IFVALQRHFIAGI 272
Cdd:pfam00528 169 LVDILQRLLDPRV 181
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
24-213 2.72e-04

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 41.66  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  24 VIWLFPLWMMFVFSTMPDNGIFspdivlwPSTNFI--ENFKNLQADTDFVGAMVISVGVAIIYTFLSVMLTSMAGWALAR 101
Cdd:COG1175    33 VFVLYPLLYTLYLSFTDWNLLG-------PPPEFVglDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469 102 yRFVGRSIVIAIIIGTITLPFSVVVIPQFIMVAREFRLANTWVALI----VPPLFNSLGVLFM-------RQS-FSMM-- 167
Cdd:COG1175   106 -KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALglepINWLGDPSLALPAviivtvwKGTgFNMLif 184

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1037396469 168 -------PGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILFLASWNNY 213
Cdd:COG1175   185 laglqsiPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVF 237
modB PRK09421
molybdate ABC transporter permease subunit;
73-206 6.93e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.21  E-value: 6.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1037396469  73 AMVISVGVAIIYTFLSVMLTSMAGWALARYRFVGRSIVIAIIIGTITLPFSVV------------VIPQFIMVAREFRLA 140
Cdd:PRK09421   10 AVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTgylllismgrrgFIGQWLYEWFGISFA 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1037396469 141 NTW--VALIVPPLFNSLGVLFMRQSFSMMPGELFDAARVEGVKEWQIFLRIALPLARPTMAALAIILF 206
Cdd:PRK09421   90 FSWrgAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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