NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1034700422|gb|ANI85619|]
View 

maturase K, partial (chloroplast) [Vavilovia formosa]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
matK super family cl42950
maturase K
 1-65 3.03e-34

maturase K


The actual alignment was detected with superfamily member CHL00002:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 120.78  E-value: 3.03e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034700422   1 MKEYQVYLERARSRQQDFLYPLLFREYIYGLAYSHNFHRSSFLENVGYDNKYSLVIVKRLITRMY 65
Cdd:CHL00002    1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMY 65
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-65 3.03e-34

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 120.78  E-value: 3.03e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034700422   1 MKEYQVYLERARSRQQDFLYPLLFREYIYGLAYSHNFHRSSFLENVGYDNKYSLVIVKRLITRMY 65
Cdd:CHL00002    1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMY 65
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
 1-65 3.13e-25

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 94.45  E-value: 3.13e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034700422   1 MKEYQVYLERARSRQQDFLYPLLFREYIYGLAYSHNFHRSSFLENVGYDNKYSLVIVKRLITRMY 65
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVGYNNKFSLLIVKRLITRMY 65
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-65 3.03e-34

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 120.78  E-value: 3.03e-34
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034700422   1 MKEYQVYLERARSRQQDFLYPLLFREYIYGLAYSHNFHRSSFLENVGYDNKYSLVIVKRLITRMY 65
Cdd:CHL00002    1 MEEFQGYLELDRSRQQDFLYPLLFQEYIYALAHDHGLNRSILLENSGYDNKYSLLIVKRLITRMY 65
MatK_N pfam01824
MatK/TrnK amino terminal region; The function of this region is unknown.
 1-65 3.13e-25

MatK/TrnK amino terminal region; The function of this region is unknown.


Pssm-ID: 280070  Cd Length: 331  Bit Score: 94.45  E-value: 3.13e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034700422   1 MKEYQVYLERARSRQQDFLYPLLFREYIYGLAYSHNFHRSSFLENVGYDNKYSLVIVKRLITRMY 65
Cdd:pfam01824   1 MEEFQRYLELDRSRQQRFLYPLLFQEYIYALAHDHNLNRSILLENVGYNNKFSLLIVKRLITRMY 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH