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Conserved domains on  [gi|1018645982|gb|AMY63157|]
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sulfate permease [Tetraspora sp. CU2551]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 110-369 1.02e-113

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member TIGR02139:

Pssm-ID: 444901  Cd Length: 265  Bit Score: 331.60  E-value: 1.02e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGK 189
Cdd:TIGR02139   6 GLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGK 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 190 KWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:TIGR02139  86 RIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 270 AWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLL 349
Cdd:TIGR02139 166 AASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAIASVML 245

                         250       260
                  ....*....|....*....|
gi 1018645982 350 LISLVMMVGVNWLQSYAQRF 369
Cdd:TIGR02139 246 IISFVILLFINLLQWWALRY 265
 
Name Accession Description Interval E-value
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 110-369 1.02e-113

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 331.60  E-value: 1.02e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGK 189
Cdd:TIGR02139   6 GLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGK 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 190 KWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:TIGR02139  86 RIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 270 AWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLL 349
Cdd:TIGR02139 166 AASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAIASVML 245

                         250       260
                  ....*....|....*....|
gi 1018645982 350 LISLVMMVGVNWLQSYAQRF 369
Cdd:TIGR02139 246 IISFVILLFINLLQWWALRY 265
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 110-368 6.81e-110

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 322.08  E-value: 6.81e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGK 189
Cdd:COG0555    10 GLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 190 KWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:COG0555    90 RLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEA 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 270 AWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLL 349
Cdd:COG0555   170 AATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLL 249

                         250
                  ....*....|....*....
gi 1018645982 350 LISLVMMVGVNWLQSYAQR 368
Cdd:COG0555   250 LISFLLLLLINLLQRRSRR 268
cysT CHL00187
sulfate transport protein; Provisional
 111-336 2.64e-108

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 316.96  E-value: 2.64e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKK 190
Cdd:CHL00187   12 SIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 191 WIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAA 270
Cdd:CHL00187   92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1018645982 271 WSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQY 336
Cdd:CHL00187  172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 158-353 4.36e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.04  E-value: 4.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 158 VSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGeegilgrLLMSLGVNVVYTRL 237
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFG-------VLLGWGILPGLGLP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 238 GVAVAMVFVsFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSN 317
Cdd:cd06261    76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645982 318 FPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISL 353
Cdd:cd06261   155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 159-317 5.91e-09

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 55.24  E-value: 5.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLlmslgvNVVYTRLG 238
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTPTA 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645982 239 VAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVlLPPLLPPLLTGTALAFSRALGEFGSIVIVSSN 317
Cdd:NF038017   75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 234-371 1.95e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 234 YTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVI 313
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645982 314 VSSNFPFKDLIAPVLIfqcleQYDYVGATVIGTVLLLISLVMMVGVNWLQSY-AQRFRR 371
Cdd:pfam00528 130 LGSWPGLGLLLIEAIL-----GYDYPEIQGPVLAAALILLLLNLLVDILQRLlDPRVRK 183
 
Name Accession Description Interval E-value
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 110-369 1.02e-113

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 331.60  E-value: 1.02e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGK 189
Cdd:TIGR02139   6 GLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGK 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 190 KWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:TIGR02139  86 RIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 270 AWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLL 349
Cdd:TIGR02139 166 AASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAIASVML 245

                         250       260
                  ....*....|....*....|
gi 1018645982 350 LISLVMMVGVNWLQSYAQRF 369
Cdd:TIGR02139 246 IISFVILLFINLLQWWALRY 265
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 110-368 6.81e-110

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 322.08  E-value: 6.81e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGK 189
Cdd:COG0555    10 GLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 190 KWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:COG0555    90 RLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEA 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 270 AWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLL 349
Cdd:COG0555   170 AATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLL 249

                         250
                  ....*....|....*....
gi 1018645982 350 LISLVMMVGVNWLQSYAQR 368
Cdd:COG0555   250 LISFLLLLLINLLQRRSRR 268
cysT CHL00187
sulfate transport protein; Provisional
 111-336 2.64e-108

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 316.96  E-value: 2.64e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKK 190
Cdd:CHL00187   12 SIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 191 WIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAA 270
Cdd:CHL00187   92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1018645982 271 WSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQY 336
Cdd:CHL00187  172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 109-364 8.23e-95

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 283.86  E-value: 8.23e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 109 GPLAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPG 188
Cdd:TIGR00969  15 GKLSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPG 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 189 KKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEE 268
Cdd:TIGR00969  95 RKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEE 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 269 AAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVL 348
Cdd:TIGR00969 175 AAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVL 254

                         250
                  ....*....|....*.
gi 1018645982 349 LLISLVMMVGVNWLQS 364
Cdd:TIGR00969 255 LLVSLVTLFLINALQA 270
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
117-370 4.13e-70

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 220.78  E-value: 4.13e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 117 LGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAA 196
Cdd:PRK10971   21 LLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALM 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 197 DLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGAS 276
Cdd:PRK10971  101 DLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGAT 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 277 PWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISLVMM 356
Cdd:PRK10971  181 RWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLL 260

                         250
                  ....*....|....*
gi 1018645982 357 VGVNWLQS-YAQRFR 370
Cdd:PRK10971  261 FSINTLQSrFGRRVV 275
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 117-357 1.53e-49

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 167.18  E-value: 1.53e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 117 LGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAA 196
Cdd:TIGR02140  10 LGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTII 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 197 DLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGAS 276
Cdd:TIGR02140  90 DLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGAS 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 277 PWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISLVMM 356
Cdd:TIGR02140 170 WWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLALLALVTL 249


                  .
gi 1018645982 357 V 357
Cdd:TIGR02140 250 V 250
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 148-368 7.30e-47

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 159.06  E-value: 7.30e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 148 TEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMS 227
Cdd:COG4149     1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 228 L-GVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALG 306
Cdd:COG4149    81 LfGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1018645982 307 EFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISLVMMVGVNWLQSYAQR 368
Cdd:COG4149   161 EFGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRR 222
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 158-362 8.11e-39

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 137.37  E-value: 8.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 158 VSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRL 237
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 238 GVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSN 317
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1018645982 318 FPFKDLIAPVLIFQCLEQyDYVGATVIGTVLLLISLVMMVGVNWL 362
Cdd:TIGR02141 162 IPGETQTIPLAIYDAVES-DYELAHQLSLVLLAISLIVLLLVELL 205
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
111-371 3.05e-35

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 135.29  E-value: 3.05e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKK 190
Cdd:COG1178    11 LLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRR 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 191 WIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMS-LGVNV--VYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVE 267
Cdd:COG1178    91 LLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRAlFGLEPpdIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLE 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 268 EAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFkdliAPVLIFQCL-EQYDYVGATVIGT 346
Cdd:COG1178   171 EAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTT----LTTAIYQAWlGDFDLGAAAALAL 246

                         250       260
                  ....*....|....*....|....*
gi 1018645982 347 VLLLISLVMMvgvnWLQSYAQRFRR 371
Cdd:COG1178   247 VLLLLVLLLL----LLERRLRRRRR 267
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 143-357 6.95e-33

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 122.51  E-value: 6.95e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 143 FIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILG 222
Cdd:TIGR01581  10 ILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 223 RLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFS 302
Cdd:TIGR01581  90 PYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1018645982 303 RALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISLVMMV 357
Cdd:TIGR01581 170 RALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLL 224
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
111-362 1.53e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 124.89  E-value: 1.53e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVMLVLPISALLAkSSLVP-------LEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVK 183
Cdd:COG1178   289 LALALCLLLVLLGLLLPLLALLL-WSLTKalddnltLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRR 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 184 FEFPGKKWIDAAADLPFALPTSVAGLtlatvygeeGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEME 263
Cdd:COG1178   368 RRGRLARLLDRLAMLPYAVPGIVLGL---------GLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQID 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 264 KEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFG-SIVIVSSNFPfkdlIAPVLIFQCLEQYDYVGAT 342
Cdd:COG1178   439 PSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSaTLLLRPPGFE----TLAVLIYQLASSGRYGEAA 514

                         250       260
                  ....*....|....*....|
gi 1018645982 343 VIGTVLLLISLVMMVGVNWL 362
Cdd:COG1178   515 ALALLLVLVSLLPVLLLERL 534
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
121-361 1.16e-29

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 115.23  E-value: 1.16e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 121 AVMLVLPISALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPF 200
Cdd:PRK11602   31 AFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPF 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 201 ALPTSVAGLTLATVYGEEGILGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYT 280
Cdd:PRK11602  111 AVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQM 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 281 FTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVG---ATVIGTVLLLISLVMMV 357
Cdd:PRK11602  191 FRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGsftAAALLTLMAIITLFLKS 270


                  ....
gi 1018645982 358 GVNW 361
Cdd:PRK11602  271 MLQW 274
modB PRK09421
molybdate ABC transporter permease subunit;
150-368 1.43e-28

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 111.17  E-value: 1.43e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 150 PVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMS-L 228
Cdd:PRK09421    5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEwF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 229 GVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEF 308
Cdd:PRK09421   85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1018645982 309 GSIVIVSSNFPFKDLIAPVLIFQCLEQYDYVGA----TVIGTVLLLISLVMMvgvNWLQSYAQR 368
Cdd:PRK09421  165 GATITFVSNIPGETQTIPSAMYTLIQTPGGESAaarlCIISIAIALASLLLS---EWLARRSRK 225
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 117-371 1.50e-28

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 112.55  E-value: 1.50e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 117 LGYLAVMLVLPISALLAKS--------SLVP---LEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFE 185
Cdd:COG1176    19 LLWLLLFFVLPLLLLLVYSfttrdpygGVVPgftLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 186 FPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGV-----NVVYTRLGVAVAMVFVSFPFVVRTMQPVLQ 260
Cdd:COG1176    99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLideplRLLYTEFAVVIGLVYVYLPFMVLPLYAALE 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 261 EMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFPFkdLIAPVLIFQCLEQYDYVG 340
Cdd:COG1176   179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVL--MIGNLIYQQFLSALNWPL 256

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1018645982 341 ATVIGTVLLLISLVMMVGVNWLQSYAQRFRR 371
Cdd:COG1176   257 AAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 110-368 1.43e-27

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 109.05  E-value: 1.43e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVmLVLPISALLAKS-------SLVP----LEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLA 178
Cdd:COG1177     7 LLLRLFLALVLLF-LYLPILVLVLYSfndswflTFPPegftLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 179 WVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLmslgvnvvytrlGVAVAMVFVSFPFVVRTMQPV 258
Cdd:COG1177    86 LALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW------------GLILAHVVFTLPFVVLVVLAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 259 LQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFG-SIVIVSSNFPfkdlIAPVLIFQCLEQYD 337
Cdd:COG1177   154 LQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFViTLFLAGPGVT----TLPVYIYSMIRRGI 229

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1018645982 338 YVGATVIGTVLLLISLVMMVGVNWLQSYAQR 368
Cdd:COG1177   230 SPEINALSTLLILLSLLLLLLAERLRRRGER 260
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 158-353 4.36e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.04  E-value: 4.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 158 VSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGeegilgrLLMSLGVNVVYTRL 237
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFG-------VLLGWGILPGLGLP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 238 GVAVAMVFVsFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSN 317
Cdd:cd06261    76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1018645982 318 FPFKDLIAPVLIFQCLEQYDYVGATVIGTVLLLISL 353
Cdd:cd06261   155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 110-353 5.46e-18

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 83.13  E-value: 5.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYM-LGYLAVMLVLPISALLAKS----SLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKF 184
Cdd:PRK15050   24 PLLWLLLpLLVLAPLVVYPLVRVVLQSltgeHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 185 EFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLG------VNVVYTRLGVAVAMVFVSFPFVVRTMQPV 258
Cdd:PRK15050  104 PFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFgleappLDFLYSPGGVILAEITFYTPFVVRPLLAA 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 259 LQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGsIVIVSSNfpfKDLIA-PVLIF-QCLEQY 336
Cdd:PRK15050  184 FAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFG-IVLFTGA---KDVVTlPVLIYsKAIVDF 259

                         250
                  ....*....|....*..
gi 1018645982 337 DYVGATVIGTVLLLISL 353
Cdd:PRK15050  260 DYPTACAIAVVNLALSL 276
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 111-363 3.22e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 79.72  E-value: 3.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVM---LVLPISALLAKSSL------VPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVL 181
Cdd:TIGR03262   2 IARLLLAGMILALllfLLLPLLALLTKSVYdsdgdfIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 182 VKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLlmsLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQE 261
Cdd:TIGR03262  82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGL---LGGFSIYGFWGIVIGEVFYTFPHALMILVTALSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 262 MEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSSNFpfkDLIAPVLIFQCLEQYDYVGA 341
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDY---NVLATDIYKQVIGQQNFPMG 235

                         250       260
                  ....*....|....*....|..
gi 1018645982 342 TVIGTVLLLISLVMMVGVNWLQ 363
Cdd:TIGR03262 236 AVVGVLLLLPALLAFGIDRAIQ 257
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 110-368 4.52e-13

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 68.68  E-value: 4.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYML---GYLAVMLVLPISALLAKSSLVPLEQF----IARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLV 182
Cdd:COG4132    12 WLAWLGLLpffLFVLLFLLLPTVWVVIGAFQDDDGGFtlanYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALR 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 183 KFEFPG-KKWIDAAADLpfalpTS-VAGLTLATVY----GEEGILGRLLMSLGVNV-----VYTRLGVAVAMVFVSFPFV 251
Cdd:COG4132    92 RGGPGWlRRAVLAFSGV-----ASnFAGVPLAFAFiatlGRNGLVTLLLKQLGIDLydgfnLYSFWGLILVYLYFQIPLM 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 252 VRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSI-VIVSSNFPfkdlIAPVLIF 330
Cdd:COG4132   167 VLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAyALTGGNYN----LVPIRIG 242

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1018645982 331 QCLeQYDYVGATVIGTVLLLISLVMMVGVNWLQSYAQR 368
Cdd:COG4132   243 ALI-SGDVLLDPNLGAALALGMIVIMALVMALYQWLQR 279
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 115-284 3.87e-10

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 61.09  E-value: 3.87e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 115 YMLGYLAVMLVLPI--SALLAKSSLVPLEQFIARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWI 192
Cdd:TIGR01253   6 LAGGVSAISFIIAFagAAFLAIFALAGEDDWRAVFQDDYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 193 DAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVN---VVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEA 269
Cdd:TIGR01253  86 LKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEwqfHIYGLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQL 165

                         170
                  ....*....|....*
gi 1018645982 270 AWSLGASPWYTFTKV 284
Cdd:TIGR01253 166 AAQLGLQGWHFFKFV 180
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 159-357 3.85e-09

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 56.86  E-value: 3.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVkfEFPGKKW----IDAAADLPFALPTSVAGLTLATVYgeegILGRLLMSlgvnvvY 234
Cdd:TIGR00974  59 TLLLTLLAIVIAVPLGIGAAIYLA--EYANGSRftkiIRFAVDILAGVPSIVVGLFGYGFF----VLTYLGGG------F 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 235 TRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGE-----FG 309
Cdd:TIGR00974 127 SLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGEtapllFT 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1018645982 310 SIVIVSSNFPFKDLIA--PVLIFQCLEQYDYVGATVI--GTVLLLISLVMMV 357
Cdd:TIGR00974 207 AGGSAFTPPNLFDPFAtlPVLIYNLASEGPYVEAQQLawAAALVLIVLVLLL 258
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 159-355 4.03e-09

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 56.58  E-value: 4.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVKFEFPGK--KWIDAAADLPFALPTSVAGLtlatvygeegiLGRLLMSLGVNVVYTR 236
Cdd:COG0581    46 TLLLVLLATLIAVPLGVLAAIYLAEYARGGRlaRLIRFAIDVLAGVPSIVYGL-----------FGYALFVLTLGLGFSL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 237 LGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVIVSS 316
Cdd:COG0581   115 LAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAG 194

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1018645982 317 NFPF--KDLIA-----PVLIFQCLEQ-YDYVGATVIGTVLLLISLVM 355
Cdd:COG0581   195 VSPFlpLSLFDpfatlPVHIYNLASSpYPAAQELAWAAALVLLLLVL 241
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 159-317 5.91e-09

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 55.24  E-value: 5.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLlmslgvNVVYTRLG 238
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTPTA 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645982 239 VAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVlLPPLLPPLLTGTALAFSRALGEFGSIVIVSSN 317
Cdd:NF038017   75 MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 111-308 2.15e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 54.69  E-value: 2.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 111 LAWLYMLGYLAVMLVLPISALLAKSS-----LVPLEQFiARATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFE 185
Cdd:PRK09497   16 VGWLVLFVFLPNLMIIGTSFLTRDDAnfvkmVFTLDNY-TRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 186 FPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGV-----NVVYTRLGVAVAMVFVSFPFVVRTMQPVLQ 260
Cdd:PRK09497   95 HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVidtpiRIMFTESAVIIGLVYILLPFMVLPLYSSIE 174

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1018645982 261 EMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEF 308
Cdd:PRK09497  175 KLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 153-284 2.91e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 54.33  E-value: 2.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 153 LSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGrllmslgvnv 232
Cdd:COG0395    73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLN---------- 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1018645982 233 vyTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKV 284
Cdd:COG0395   143 --TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRI 192
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 159-281 4.16e-08

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 54.84  E-value: 4.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGILGRLLMSLGVNV---VYT 235
Cdd:PRK09433   49 SFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWpfsIYG 128

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1018645982 236 RLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTF 281
Cdd:PRK09433  129 LQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFF 174
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 110-368 5.70e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 50.86  E-value: 5.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 110 PLAWLYMLGYLAVMLVLPIS------ALLAKSSLVP-----------LEQFIARATEPVALSAYYVSFSMALIAGAISAV 172
Cdd:PRK10683   36 PYLWLILLFLLPFLIVFKISlaemarAIPPYTDLMEwadgqlsitlnLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 173 FGFLLAWVlVKFEFPGKKWIDAaadLPFALPTSVAglTLATVYG------EEGILGRLLMSLGV-----NVVYTRLGVAV 241
Cdd:PRK10683  116 IGYPLAWA-VAHSKPSTRNILL---LLVILPSWTS--FLIRVYAwmgilkNNGVLNNFLLWLGVidqplTILHTNLAVYI 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 242 AMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFgsIVIVSSNFPFK 321
Cdd:PRK10683  190 GIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF--VIPELLGGPDS 267

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1018645982 322 DLIAPVLIFQCLEQYDYVGATVIGTVLLLIslvMMVGVNWLQSYAQR 368
Cdd:PRK10683  268 IMIGRVLWQEFFNNRDWPVASAVAIIMLLL---LIVPIMWFHKHQQK 311
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 159-362 2.90e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 48.06  E-value: 2.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 159 SFSMALIAGAISAVFGFLLAWVLVKFEFPGKKWIDAAADLPFALPTSVAGLTLATvygeegilgrLLMSLGVNVVYTRLg 238
Cdd:PRK09500   62 SLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV----------LFMLLGIQLGFWSL- 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 239 vAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEfgsiVIVSS-- 316
Cdd:PRK09500  131 -LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD----VVVSSfv 205

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1018645982 317 ---NFPfkdlIAPVLIFQCLEqydyVGAT----VIGTVLLLISLVMMVGVNWL 362
Cdd:PRK09500  206 tgpSYE----ILPLKIYSMVK----VGVSpevnALATILLVLSLVLVILSQLL 250
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 70-364 1.63e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 46.75  E-value: 1.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982  70 VLQPVAAVGSIGSSSDVPWQPPQQASGLRLpeislwdldgplaWLYMLGYLAVMLVLP------ISALLAKSSLVpleqf 143
Cdd:PRK09433  250 LSQRLSKAIAVGATLLRGWRDPQDSLWSRL-------------WDGLLIVLALLLLLPpllavvVSGLNASLLRV----- 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 144 iarATEPVALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFPGKK----WIDAAADLPFALPtsvaGLTLATvygeeG 219
Cdd:PRK09433  312 ---LAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKlaaqALELSGMLILAMP----GIVLAT-----G 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 220 iLGRLLMSLGVNVVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTAL 299
Cdd:PRK09433  380 -LFLLLRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAF 458

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1018645982 300 AFSRALGEFGSIVIVSSNfPFKDLiaPVLIFQCLEQYDYVGATVIGTVLLLISLVMMVGVNWLQS 364
Cdd:PRK09433  459 ACALSLGDFGVIALFGSQ-DFRTL--PFLLYQQLGSYRSQDAAVTALLLLLLCLLLFTLIERLPG 520
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 234-371 1.95e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.60  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 234 YTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGEFGSIVI 313
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645982 314 VSSNFPFKDLIAPVLIfqcleQYDYVGATVIGTVLLLISLVMMVGVNWLQSY-AQRFRR 371
Cdd:pfam00528 130 LGSWPGLGLLLIEAIL-----GYDYPEIQGPVLAAALILLLLNLLVDILQRLlDPRVRK 183
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 152-317 3.20e-05

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 45.34  E-value: 3.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 152 ALSAYYVSFSMALIAGAISAVFGFLLAWVLVKFEFP-GKKWIDAAADLPFALPTSVAGLTLATVYGE--EGILGRLLmSL 228
Cdd:TIGR02138  61 ALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFL-GS 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 229 GVNVVYTRLGVAVAMVFVSF----PFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRA 304
Cdd:TIGR02138 140 NLGLIPLFGGPILTAGIVLAimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRA 219

                         170
                  ....*....|...
gi 1018645982 305 LGEFGSIVIVSSN 317
Cdd:TIGR02138 220 LGETMAVTMVIGN 232
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 162-284 4.41e-04

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 41.19  E-value: 4.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 162 MALIAGAISAVFGFLLAWVLV---KFEFPGKKWIDAAAD--------LPFAlptsvagltlatvygeegILGRLLMSLGV 230
Cdd:COG2011    22 MVGVSTLIAVLLGLPLGVLLVltrPGGLLPNPVLYRVLGvivnifrsIPFI------------------ILLVALIPLTR 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1018645982 231 NVVYTRLGVA---VAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKV 284
Cdd:COG2011    84 LIVGTSIGTTaaiVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKV 140
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 153-305 2.24e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 39.45  E-value: 2.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 153 LSAYYVSFSMALIAGAISAVFGFLLAWVLVKF-EFPGKKWIDAAADLPFALPTSVAGLTLATVYGEEGilgrllMSLGVN 231
Cdd:PRK10592   62 MSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALA------HAIGWP 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1018645982 232 VVYTRLGVAVAMVFVSFPFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRAL 305
Cdd:PRK10592  136 ADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSL 209
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 158-283 2.69e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 38.94  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1018645982 158 VSFSMALIAGAISAVFGFLLAWVLVKFefpgKKWIDAA----ADLPFALPTSVAGLTLATVygeegilgrllmsLGVNVV 233
Cdd:COG1173    80 ISLLVGLLAVLIALVIGVLLGLLAGYF----GGWVDAVlmrlVDVLLAFPSLLLAIALVAV-------------LGPGLL 142

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1018645982 234 ytrlGVAVAMVFVSFPFVVRTMQP-VLQEMEKEVEEAAWSLGASPWYTFTK 283
Cdd:COG1173   143 ----NVILALGLTGWPGYARLVRAqVLSLREREYVEAARALGASPLRIIFR 189
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 249-307 7.98e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 37.76  E-value: 7.98e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1018645982 249 PFVVRTMQPVLQEMEKEVEEAAWSLGASPWYTFTKVLLPPLLPPLLTGTALAFSRALGE 307
Cdd:COG0573   169 PTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGE 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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