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Conserved domains on  [gi|1015427107|gb|AMV08898|]
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polysaccharide biosynthesis protein GumF [Xanthomonas citri pv. aurantifolii]

Protein Classification

acyltransferase family protein( domain architecture ID 10007593)

acyltransferase family protein similar to Mesorhizobium japonicum nodulation protein NolL, which may act as an acetyltransferase that modifies the fucose of the nod factor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NolL COG3594
Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];
22-305 1.89e-38

Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];


:

Pssm-ID: 442813  Cd Length: 270  Bit Score: 138.18  E-value: 1.89e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  22 TSGRVRDPRIDATKAIAILLVVFCHAKGVP-------HGMTLFAYSFHVPLFFLVSGWLaagYASRNTGLTQTISKQARS 94
Cdd:COG3594     2 TSAKKRDPWIDNAKGILIILVVLGHAIGPLigdgdwlRALYLFIYSFHMPLFFFISGYF---SKPSRNGFKKFLKKKFKR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  95 LLLPYVTFYLLGYVYWLLTRNIGEkaarwgshpwwepivAMFTGVGPDLYVQPPLWFLPVMLVTVVSYMVLRRL--MSPI 172
Cdd:COG3594    79 LLVPYLIFQLIYSLFKFLVEGGEP---------------LDLSLLLLLLDPNGALWFLPALFVWRLLLPLLRRLrrWPLL 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 173 LIAGLALIVAWFWMnwfpaqhVRIFFGLDVLPVSLCFYALGALLIylSPRLPTSLAGSALATVVLALAVAWLAQANGRID 252
Cdd:COG3594   144 IALAIGLLAGYLPS-------IGLPLSLDRTLVFLPFFLLGYLLR--KYHLERLRRLRVLLLAVAVFLAAALLGFNRYLL 214
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1015427107 253 VNMLEFGH--NYALFLVSALLGSLMVICAARLVQS-WAWLQWIGRNTLLILCTHML 305
Cdd:COG3594   215 LGSRSYGNwyGPLLRLLVALLGILLVLALLALLPRrRTWLTYLGRNTLYIYLLHGF 270
 
Name Accession Description Interval E-value
NolL COG3594
Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];
22-305 1.89e-38

Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];


Pssm-ID: 442813  Cd Length: 270  Bit Score: 138.18  E-value: 1.89e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  22 TSGRVRDPRIDATKAIAILLVVFCHAKGVP-------HGMTLFAYSFHVPLFFLVSGWLaagYASRNTGLTQTISKQARS 94
Cdd:COG3594     2 TSAKKRDPWIDNAKGILIILVVLGHAIGPLigdgdwlRALYLFIYSFHMPLFFFISGYF---SKPSRNGFKKFLKKKFKR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  95 LLLPYVTFYLLGYVYWLLTRNIGEkaarwgshpwwepivAMFTGVGPDLYVQPPLWFLPVMLVTVVSYMVLRRL--MSPI 172
Cdd:COG3594    79 LLVPYLIFQLIYSLFKFLVEGGEP---------------LDLSLLLLLLDPNGALWFLPALFVWRLLLPLLRRLrrWPLL 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 173 LIAGLALIVAWFWMnwfpaqhVRIFFGLDVLPVSLCFYALGALLIylSPRLPTSLAGSALATVVLALAVAWLAQANGRID 252
Cdd:COG3594   144 IALAIGLLAGYLPS-------IGLPLSLDRTLVFLPFFLLGYLLR--KYHLERLRRLRVLLLAVAVFLAAALLGFNRYLL 214
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1015427107 253 VNMLEFGH--NYALFLVSALLGSLMVICAARLVQS-WAWLQWIGRNTLLILCTHML 305
Cdd:COG3594   215 LGSRSYGNwyGPLLRLLVALLGILLVLALLALLPRrRTWLTYLGRNTLYIYLLHGF 270
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
31-336 4.82e-16

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 77.98  E-value: 4.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  31 IDATKAIAILLVVFCHA------------KGVPHGMTLFAYSFHVPLFFLVSGWLAAGYASRNTGLTQTISKQARSLLLP 98
Cdd:pfam01757   4 LDLLRGIAILLVVIGHVllafgyggfglpLELALLFLVFLGRFGVPLFFFISGYLLAALRRRRRSLFKFIKKRLLRLLIP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  99 YVTFYLLGYVYWLLtrnigekAARWGSHPWWEPIVAMFTGVGPDLYVQPPLWFLPVMLVTVVSYMVLRRLM-----SPIL 173
Cdd:pfam01757  84 YLLWSLLYALLLLL-------VAGLSVGGALLLLLLLNNGPLFFLGVNGHLWFLSALFVFYLLLPLLLRLLrklkkSLLL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 174 IAGLALIVAWFWMNWFPAQHVRIFFGLDVLPVSLCFYALGALLIYL----SPRLPTSLAGSALATVVLALAVAWLAQANG 249
Cdd:pfam01757 157 LLLLLLLLLFLLYILILLVGVPFTVLVLFIFLYLPFFLLGALLARYrkriRSKRLKLLIIILLALALLALILLLLFLFGL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 250 RIDVNMLEFGHNYALFLVSALLGSLMVICAARLVQSWAWLQWIGRNTLLILCTHMLVFFVLSGVAALAGGLGGARPGLGW 329
Cdd:pfam01757 237 DPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGKLLGLLGLPLLPILLFLL 316

                  ....*..
gi 1015427107 330 AIFVTLF 336
Cdd:pfam01757 317 LLVLTLL 323
 
Name Accession Description Interval E-value
NolL COG3594
Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];
22-305 1.89e-38

Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism];


Pssm-ID: 442813  Cd Length: 270  Bit Score: 138.18  E-value: 1.89e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  22 TSGRVRDPRIDATKAIAILLVVFCHAKGVP-------HGMTLFAYSFHVPLFFLVSGWLaagYASRNTGLTQTISKQARS 94
Cdd:COG3594     2 TSAKKRDPWIDNAKGILIILVVLGHAIGPLigdgdwlRALYLFIYSFHMPLFFFISGYF---SKPSRNGFKKFLKKKFKR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  95 LLLPYVTFYLLGYVYWLLTRNIGEkaarwgshpwwepivAMFTGVGPDLYVQPPLWFLPVMLVTVVSYMVLRRL--MSPI 172
Cdd:COG3594    79 LLVPYLIFQLIYSLFKFLVEGGEP---------------LDLSLLLLLLDPNGALWFLPALFVWRLLLPLLRRLrrWPLL 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 173 LIAGLALIVAWFWMnwfpaqhVRIFFGLDVLPVSLCFYALGALLIylSPRLPTSLAGSALATVVLALAVAWLAQANGRID 252
Cdd:COG3594   144 IALAIGLLAGYLPS-------IGLPLSLDRTLVFLPFFLLGYLLR--KYHLERLRRLRVLLLAVAVFLAAALLGFNRYLL 214
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1015427107 253 VNMLEFGH--NYALFLVSALLGSLMVICAARLVQS-WAWLQWIGRNTLLILCTHML 305
Cdd:COG3594   215 LGSRSYGNwyGPLLRLLVALLGILLVLALLALLPRrRTWLTYLGRNTLYIYLLHGF 270
Acyl_transf_3 pfam01757
Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain ...
31-336 4.82e-16

Acyltransferase family; This family includes a range of acyltransferase enzymes. This domain is found in a wide range of acyltransferase enzymes, including, mainly, bacterial proteins which catalyze the transfer of acyl groups, other than amino-acyl, from one compound to another, such as Glucans biosynthesis protein C (OPGC) or protein OatA from Listeria monocytogenes serovar 1/2a and Staphylococcus aureus, an integral membrane protein which is responsible for O-acetylation at the C6-hydroxyl group of N-acetylmuramyl residues, forming the corresponding N,6-O-diacetylmuramic acid of the peptidoglycan, a modification that determines lysozyme resistance. This domain is also present in eukaryotic proteins, namely O-acyltransferase like protein (OACYL) from mouse and RHY1 (Regulator of hypoxia-inducible factor 1) and NRF6 (Nose resistant to fluoxetine protein 6) from Caenorhabditis elegans.


Pssm-ID: 426413 [Multi-domain]  Cd Length: 330  Bit Score: 77.98  E-value: 4.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  31 IDATKAIAILLVVFCHA------------KGVPHGMTLFAYSFHVPLFFLVSGWLAAGYASRNTGLTQTISKQARSLLLP 98
Cdd:pfam01757   4 LDLLRGIAILLVVIGHVllafgyggfglpLELALLFLVFLGRFGVPLFFFISGYLLAALRRRRRSLFKFIKKRLLRLLIP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  99 YVTFYLLGYVYWLLtrnigekAARWGSHPWWEPIVAMFTGVGPDLYVQPPLWFLPVMLVTVVSYMVLRRLM-----SPIL 173
Cdd:pfam01757  84 YLLWSLLYALLLLL-------VAGLSVGGALLLLLLLNNGPLFFLGVNGHLWFLSALFVFYLLLPLLLRLLrklkkSLLL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 174 IAGLALIVAWFWMNWFPAQHVRIFFGLDVLPVSLCFYALGALLIYL----SPRLPTSLAGSALATVVLALAVAWLAQANG 249
Cdd:pfam01757 157 LLLLLLLLLFLLYILILLVGVPFTVLVLFIFLYLPFFLLGALLARYrkriRSKRLKLLIIILLALALLALILLLLFLFGL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 250 RIDVNMLEFGHNYALFLVSALLGSLMVICAARLVQSWAWLQWIGRNTLLILCTHMLVFFVLSGVAALAGGLGGARPGLGW 329
Cdd:pfam01757 237 DPLALEFYGYPSLLLLLLGILLLLLLALLLANLRSLRRLLSYLGKYSFGIYLIHPPILLLLGKLLGLLGLPLLPILLFLL 316

                  ....*..
gi 1015427107 330 AIFVTLF 336
Cdd:pfam01757 317 LLVLTLL 323
YcfT COG4763
Uncharacterized membrane protein YcfT [Function unknown];
31-363 2.57e-15

Uncharacterized membrane protein YcfT [Function unknown];


Pssm-ID: 443795  Cd Length: 342  Bit Score: 76.13  E-value: 2.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  31 IDATKAIAILLVVFCH-------AKGVPHGMT---LFAYSFHVPLFFLVSGWLAAGYASRntGLTQTISKQARSLLLPYV 100
Cdd:COG4763    12 IDTAKGICIILVVMMHsvlgvyaAGGLAGFWHyvnAFLKPFRMPLFFLISGLFASRVIDR--PWREYLDRRVVHFLYFYV 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 101 tfyLLGYVYWLLTRNIGEKAARWGSHPWWEPIVAMFTGVGpdlyvqpPLWFLPVMLVTVVSYMVLRRLMSPILIAGLALi 180
Cdd:COG4763    90 ---LWGVIQWLFKAPINAAANAAYAGSLSEFLMGLILPFG-------TLWYLYALAVYFVVTKLLRRVPPPLVLAAAAA- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 181 vawfwMNWFPAQHVRIfFGLDVLPVSLCFYALGAL----LIYLSPRLPTSLAGSALATVVLALAVAWLaqangridvnML 256
Cdd:COG4763   159 -----LEIAPVLPTGW-WGVDSFARYFVYFYLGYFfapqIFALADWARARRALALAGLALWAVANALL----------VF 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 257 EFGHNYALFLVSALLGSLMVICAARLVQSW---AWLQWIGRNTLLILCTHMLVFFVLSGVAALAGGLGGARPGLGWA-IF 332
Cdd:COG4763   223 GLALLPGVSLLLGLLGAVAIVALASLLARRrlmAPLRYIGRNTLVIYLAHFIPMAALRLALLKAWTGLLTLADLGLYpLL 302
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1015427107 333 VTLFALAASVPLRWILMRFAPWALGARPVAA 363
Cdd:COG4763   303 VTLIAVLGSLLVWKLLRRTPGDFLFERPAWA 333
WecH COG3274
Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];
27-351 3.80e-11

Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442505 [Multi-domain]  Cd Length: 345  Bit Score: 63.47  E-value: 3.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  27 RDPRIDATKAIAILLVVFCHAKGVPHGMTLFAYSFH--------------VPLFFLVSGWLAAGYasRNTGLTQTISKQA 92
Cdd:COG3274     8 RIVYLDLLRVLAIFAVVLIHVTAPFVSSPGLIGSLNwwvanlldslsrfaVPLFFMISGALLLDR--KKEDLKDFYKKRL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107  93 RSLLLPYVTFYLlgyVYWLLTRNIGekaaRWGSHPWWEPIVAMFTGvgpdlYVQPPLWFLPVMLVTVVSYMVLRRLMS-- 170
Cdd:COG3274    86 RRILIPLLFWSL---IYLLFFTFLG----GFSFNSLSEFLKNLLTG-----GVSYHLWFLYMIIGLYLFTPLLRKLVRka 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 171 ----PILIAGLALIVAWFWMNWFPAQHVRIFFGLDVLPVSLCFYALGALL----IYLSPRLPTSLAGSALATVVLALAVA 242
Cdd:COG3274   154 skreLLYFLLLWLILSLLLPYLNTLLGIDLFFTLTLFLGYLGYFLLGYYLarykARLKKRRLIALLLFLVGLALTFLGTY 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1015427107 243 WLAQANGRIDVNMlefghnYALFLVSALLGSLMVICAARLVQ-----SWAWLQWIGRNTLLILCTHMLVFFVLSGVAALA 317
Cdd:COG3274   234 LLSLQTGKFNELF------YSYLSPNVVLMSVALFLLLKNLSfrsskLSRLLSRLSKYSFGIYLIHPLVLDLLTKLGLNL 307
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1015427107 318 GGLggarPGLGWAIFVTLFALAASVPLRWILMRF 351
Cdd:COG3274   308 LNI----NPLLGIPLVALLTFVLSLLIVLLLRKI 337
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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