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Conserved domains on  [gi|1004391105|gb|AMO90137|]
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ftsK/SpoIIIE family protein [Corynebacterium simulans]

Protein Classification

DNA translocase FtsK( domain architecture ID 11680576)

DNA translocase FtsK is a motor that converts the chemical energy of binding and hydrolyzing ATP into movement of the double-stranded DNA substrate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
515-991 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 801.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTAGKP--TKARTEANDRIIEAITDVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNLAYAVAT 592
Cdd:COG1674    137 LPPLDLLDPPPPkkEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAA 216
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  593 DNLRLLTPIPGKSAVGIEVPNADREMVRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMPHLLVAGATGSGKSA 672
Cdd:COG1674    217 KSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKSV 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  673 FVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHLITPIITQPKKAAAALQWLVEEMEQRYMDMKAARVRKIEDYN 752
Cdd:COG1674    297 CINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAANALKWAVREMERRYKLFAKAGVRNIAGYN 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  753 RKVISGAHQAPlgSEREMRPYPYIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLVLATQRPSVDVVTGLIKTNV 832
Cdd:COG1674    377 EKVREAKAKGE--EEEGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDVITGLIKANI 454
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  833 PSRLAFATSSLTDSRVILDQGGAEKLIGMGDGLFIPQG-GRPVRMQGAFVSDEEVQAVVDAAKAQGQPNYTEGVTeekKS 911
Cdd:COG1674    455 PSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPPGaSKPIRVQGAFVSDEEVERVVDFLKSQGEPEYIEEIL---EE 531
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  912 EAKKEIDDDIGKDMDDLLEAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVKPEELDTI 991
Cdd:COG1674    532 EEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKPREVLVSPEELEEL 611
FtsK_4TM super family cl16286
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
112-240 3.93e-05

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


The actual alignment was detected with superfamily member pfam13491:

Pssm-ID: 463896  Cd Length: 171  Bit Score: 45.27  E-value: 3.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  112 VGVIGAYLTDAVRYVIGAGAYVLPVALIALAMALMMGVSgvagrLQPRVMGGIGLIIvsMLGLIHIFAGLPKLSWRDNAA 191
Cdd:pfam13491   47 GGRFGAWLADLLLQLFGYSAWLLPVALLYWGWRLFRRRS-----LERRWLRLLGFLL--LLLASSALFALRLPSLEFGLP 119
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1004391105  192 GDAGGAIGFAVGQLLEAAFSAYVAVPLLILLIIYGALNVTGITLRQAFD 240
Cdd:pfam13491  120 GGAGGVIGRLLANALVTLLGFTGATLLLLALLAIGLSLVTGFSWLALAE 168
 
Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
515-991 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 801.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTAGKP--TKARTEANDRIIEAITDVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNLAYAVAT 592
Cdd:COG1674    137 LPPLDLLDPPPPkkEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAA 216
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  593 DNLRLLTPIPGKSAVGIEVPNADREMVRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMPHLLVAGATGSGKSA 672
Cdd:COG1674    217 KSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKSV 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  673 FVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHLITPIITQPKKAAAALQWLVEEMEQRYMDMKAARVRKIEDYN 752
Cdd:COG1674    297 CINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAANALKWAVREMERRYKLFAKAGVRNIAGYN 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  753 RKVISGAHQAPlgSEREMRPYPYIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLVLATQRPSVDVVTGLIKTNV 832
Cdd:COG1674    377 EKVREAKAKGE--EEEGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDVITGLIKANI 454
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  833 PSRLAFATSSLTDSRVILDQGGAEKLIGMGDGLFIPQG-GRPVRMQGAFVSDEEVQAVVDAAKAQGQPNYTEGVTeekKS 911
Cdd:COG1674    455 PSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPPGaSKPIRVQGAFVSDEEVERVVDFLKSQGEPEYIEEIL---EE 531
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  912 EAKKEIDDDIGKDMDDLLEAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVKPEELDTI 991
Cdd:COG1674    532 EEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKPREVLVSPEELEEL 611
PRK10263 PRK10263
DNA translocase FtsK; Provisional
515-985 8.31e-141

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 456.85  E-value: 8.31e-141
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTagkPTKARTEAND--------RIIEAitdVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNL 586
Cdd:PRK10263   866 LPSLDLLT---PPPSEVEPVDtfaleqmaRLVEA---RLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDL 939
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  587 AYAVATDNLRLLTPIPGKSAVGIEVPNADREMVRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMPHLLVAGAT 666
Cdd:PRK10263   940 ARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTT 1019
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  667 GSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHLITPIITQPKKAAAALQWLVEEMEQRYMDMKAARVR 746
Cdd:PRK10263  1020 GSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 1099
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  747 KIEDYNRKVISGAHQA---------PLGSEREMRP----YPYIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLV 813
Cdd:PRK10263  1100 NLAGYNEKIAEADRMMrpipdpywkPGDSMDAQHPvlkkEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLV 1179
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  814 LATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQGGAEKLIGMGDGLFI-PQGGRPVRMQGAFVSDEEVQAVVDA 892
Cdd:PRK10263  1180 LATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSgPNSTLPVRVHGAFVRDQEVHAVVQD 1259
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  893 AKAQGQPNYTEGVTEEKKSEAKKEIDDDIGKDMDDLLEAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGP 972
Cdd:PRK10263  1260 WKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSE 1339
                          490
                   ....*....|...
gi 1004391105  973 SEGSKAREVLVKP 985
Cdd:PRK10263  1340 QGHNGNREVLAPP 1352
FtsK_SpoIIIE pfam01580
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ...
621-820 5.21e-64

FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.


Pssm-ID: 279863 [Multi-domain]  Cd Length: 219  Bit Score: 215.70  E-value: 5.21e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  621 LRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMP-HLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKM 699
Cdd:pfam01580    1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  700 VELTPYEGIPHLIT-PIITQPKKAAAALQWLVEEMEQRYMDMKAARVRKIEDYNRKV-------------ISGAHQAPLG 765
Cdd:pfam01580   81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIaedpldgfgdvflVIYGVHVMCT 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1004391105  766 SEREMRPYPYIVCVVDELADLMMTAPKE----IEESIVRITQKARAAGIHLVLATQRPS 820
Cdd:pfam01580  161 AGRWLEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
Ftsk_gamma smart00843
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ...
930-984 5.32e-24

This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 197911 [Multi-domain]  Cd Length: 63  Bit Score: 95.94  E-value: 5.32e-24
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 1004391105   930 EAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVK 984
Cdd:smart00843    9 EAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
T7SS_EccC_a TIGR03924
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ...
658-882 1.54e-23

type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274858 [Multi-domain]  Cd Length: 658  Bit Score: 106.98  E-value: 1.54e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  658 PHLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMvELT--PYEGIPHlITPIITQPKKAAAalqwLVE---- 731
Cdd:TIGR03924  436 PHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKG-GATflGLEGLPH-VSAVITNLADEAP----LVDrmqd 509
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  732 ----EMEQRYMDMKAA-RVRKIEDYNRKVISGAHQAPLgseremrpyPYIVCVVDELADLmMTAPKEIEESIVRITQKAR 806
Cdd:TIGR03924  510 alagEMNRRQELLRAAgNFANVAEYEKARAAGADLPPL---------PALFVVVDEFSEL-LSQHPDFADLFVAIGRLGR 579
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1004391105  807 AAGIHLVLATQRPSVDVVTGLiKTNVPSRLAFATSSLTDSRVILDQGGAEKLIGM-GDGLFIPQGGRPVRMQGAFVS 882
Cdd:TIGR03924  580 SLGVHLLLASQRLDEGRLRGL-ESHLSYRIGLKTFSASESRAVLGVPDAYHLPSTpGAGYLKVDTAEPVRFRAAYVS 655
TrwB_TraG_TraD_VirD4 cd01127
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ...
659-840 1.10e-06

TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.


Pssm-ID: 410871 [Multi-domain]  Cd Length: 144  Bit Score: 49.14  E-value: 1.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  659 HLLVAGATGSGKSAFVNSMLVSLLTRatpeQVRLILVDPKM---VELTPYEGIPHLITPIITqpkkaaAALQWLVEEMeq 735
Cdd:cd01127      1 NTLVLGTTGSGKTTSIVIPLLDQAAR----GGSVIITDPKGelfLVIPDRDDSFAALRALFF------NQLFRALTEL-- 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  736 rymdmkaarvrkiedynrkvisgahqaplGSEREMRPYPYIVCVVDELADLMmtapkeIEESIVRITQKARAAGIHLVLA 815
Cdd:cd01127     69 -----------------------------ASLSPGRLPRRVWFILDEFANLG------RIPNLPNLLATGRKRGISVVLI 113
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1004391105  816 TQ------RPSVDVVTGLIKTNVPSRLAFAT 840
Cdd:cd01127    114 LQslaqleAVYGKDGAQTILGNCNTKLYLGT 144
FtsK_4TM pfam13491
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
112-240 3.93e-05

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


Pssm-ID: 463896  Cd Length: 171  Bit Score: 45.27  E-value: 3.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  112 VGVIGAYLTDAVRYVIGAGAYVLPVALIALAMALMMGVSgvagrLQPRVMGGIGLIIvsMLGLIHIFAGLPKLSWRDNAA 191
Cdd:pfam13491   47 GGRFGAWLADLLLQLFGYSAWLLPVALLYWGWRLFRRRS-----LERRWLRLLGFLL--LLLASSALFALRLPSLEFGLP 119
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1004391105  192 GDAGGAIGFAVGQLLEAAFSAYVAVPLLILLIIYGALNVTGITLRQAFD 240
Cdd:pfam13491  120 GGAGGVIGRLLANALVTLLGFTGATLLLLALLAIGLSLVTGFSWLALAE 168
 
Name Accession Description Interval E-value
FtsK COG1674
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ...
515-991 0e+00

DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441280 [Multi-domain]  Cd Length: 611  Bit Score: 801.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTAGKP--TKARTEANDRIIEAITDVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNLAYAVAT 592
Cdd:COG1674    137 LPPLDLLDPPPPkkEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPGVKVSKITNLADDIALALAA 216
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  593 DNLRLLTPIPGKSAVGIEVPNADREMVRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMPHLLVAGATGSGKSA 672
Cdd:COG1674    217 KSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGKDISGEPVVADLAKMPHLLIAGATGSGKSV 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  673 FVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHLITPIITQPKKAAAALQWLVEEMEQRYMDMKAARVRKIEDYN 752
Cdd:COG1674    297 CINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAANALKWAVREMERRYKLFAKAGVRNIAGYN 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  753 RKVISGAHQAPlgSEREMRPYPYIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLVLATQRPSVDVVTGLIKTNV 832
Cdd:COG1674    377 EKVREAKAKGE--EEEGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILATQRPSVDVITGLIKANI 454
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  833 PSRLAFATSSLTDSRVILDQGGAEKLIGMGDGLFIPQG-GRPVRMQGAFVSDEEVQAVVDAAKAQGQPNYTEGVTeekKS 911
Cdd:COG1674    455 PSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPPGaSKPIRVQGAFVSDEEVERVVDFLKSQGEPEYIEEIL---EE 531
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  912 EAKKEIDDDIGKDMDDLLEAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVKPEELDTI 991
Cdd:COG1674    532 EEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSKPREVLVSPEELEEL 611
PRK10263 PRK10263
DNA translocase FtsK; Provisional
515-985 8.31e-141

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 456.85  E-value: 8.31e-141
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTagkPTKARTEAND--------RIIEAitdVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNL 586
Cdd:PRK10263   866 LPSLDLLT---PPPSEVEPVDtfaleqmaRLVEA---RLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDL 939
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  587 AYAVATDNLRLLTPIPGKSAVGIEVPNADREMVRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMPHLLVAGAT 666
Cdd:PRK10263   940 ARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTT 1019
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  667 GSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHLITPIITQPKKAAAALQWLVEEMEQRYMDMKAARVR 746
Cdd:PRK10263  1020 GSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 1099
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  747 KIEDYNRKVISGAHQA---------PLGSEREMRP----YPYIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLV 813
Cdd:PRK10263  1100 NLAGYNEKIAEADRMMrpipdpywkPGDSMDAQHPvlkkEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLV 1179
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  814 LATQRPSVDVVTGLIKTNVPSRLAFATSSLTDSRVILDQGGAEKLIGMGDGLFI-PQGGRPVRMQGAFVSDEEVQAVVDA 892
Cdd:PRK10263  1180 LATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSgPNSTLPVRVHGAFVRDQEVHAVVQD 1259
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  893 AKAQGQPNYTEGVTEEKKSEAKKEIDDDIGKDMDDLLEAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGP 972
Cdd:PRK10263  1260 WKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSE 1339
                          490
                   ....*....|...
gi 1004391105  973 SEGSKAREVLVKP 985
Cdd:PRK10263  1340 QGHNGNREVLAPP 1352
FtsK_SpoIIIE pfam01580
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ...
621-820 5.21e-64

FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.


Pssm-ID: 279863 [Multi-domain]  Cd Length: 219  Bit Score: 215.70  E-value: 5.21e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  621 LRDVLDSPAIASDEDPMLIGLGKDIEGEYSSYSVQKMP-HLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKM 699
Cdd:pfam01580    1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  700 VELTPYEGIPHLIT-PIITQPKKAAAALQWLVEEMEQRYMDMKAARVRKIEDYNRKV-------------ISGAHQAPLG 765
Cdd:pfam01580   81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIaedpldgfgdvflVIYGVHVMCT 160
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1004391105  766 SEREMRPYPYIVCVVDELADLMMTAPKE----IEESIVRITQKARAAGIHLVLATQRPS 820
Cdd:pfam01580  161 AGRWLEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
FtsK_alpha pfam17854
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell ...
515-613 3.26e-34

FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally and reverse direction. FtsK can be split into three domains called alpha (this entry), beta and gamma. The alpha and beta domains contain the core ATPase machinery of the DNA translocase.


Pssm-ID: 436096 [Multi-domain]  Cd Length: 101  Bit Score: 126.50  E-value: 3.26e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  515 LPTTALLTAGKP--TKARTEANDRIIEAITDVFEEFKVNAQVTGFSRGPTVTRYEIELGPGVKVSKITNLQSNLAYAVAT 592
Cdd:pfam17854    1 LPPLDLLEPPPTssQKVDEEELEETAEKLEETLAEFGIEAKVVGVTPGPVVTLYELEPAPGVKVSKITNLSDDLALALSA 80
                           90       100
                   ....*....|....*....|.
gi 1004391105  593 DNLRLLTPIPGKSAVGIEVPN 613
Cdd:pfam17854   81 PSIRIVAPIPGKSTIGIEVPN 101
FtsK_gamma pfam09397
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix ...
930-984 1.70e-25

Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 462786 [Multi-domain]  Cd Length: 63  Bit Score: 100.14  E-value: 1.70e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1004391105  930 EAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVK 984
Cdd:pfam09397    9 EAVEIVIETGKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPADGSKPREVLIT 63
Ftsk_gamma smart00843
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ...
930-984 5.32e-24

This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.


Pssm-ID: 197911 [Multi-domain]  Cd Length: 63  Bit Score: 95.94  E-value: 5.32e-24
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 1004391105   930 EAVELVVTSQLGSTSMLQRKLRIGFAKAGRLMDLMESRGVVGPSEGSKAREVLVK 984
Cdd:smart00843    9 EAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
T7SS_EccC_a TIGR03924
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ...
658-882 1.54e-23

type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274858 [Multi-domain]  Cd Length: 658  Bit Score: 106.98  E-value: 1.54e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  658 PHLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMvELT--PYEGIPHlITPIITQPKKAAAalqwLVE---- 731
Cdd:TIGR03924  436 PHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKG-GATflGLEGLPH-VSAVITNLADEAP----LVDrmqd 509
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  732 ----EMEQRYMDMKAA-RVRKIEDYNRKVISGAHQAPLgseremrpyPYIVCVVDELADLmMTAPKEIEESIVRITQKAR 806
Cdd:TIGR03924  510 alagEMNRRQELLRAAgNFANVAEYEKARAAGADLPPL---------PALFVVVDEFSEL-LSQHPDFADLFVAIGRLGR 579
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1004391105  807 AAGIHLVLATQRPSVDVVTGLiKTNVPSRLAFATSSLTDSRVILDQGGAEKLIGM-GDGLFIPQGGRPVRMQGAFVS 882
Cdd:TIGR03924  580 SLGVHLLLASQRLDEGRLRGL-ESHLSYRIGLKTFSASESRAVLGVPDAYHLPSTpGAGYLKVDTAEPVRFRAAYVS 655
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
658-850 3.48e-20

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 96.98  E-value: 3.48e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  658 PHLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPK---MVEltPYEGIPHLITPII----TQPKKAAAALQwlv 730
Cdd:TIGR03928  470 PHGLVAGTTGSGKSEILQTYILSLAVNFHPHEVAFLLIDYKgggMAN--LFKNLPHLLGTITnldgAQSMRALASIK--- 544
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  731 EEMEQRYMDMKAARVRKIEDYNRKVISGAHQAPLgseremrpyPYIVCVVDELADLMMTAPKEIEE--SIVRItqkARAA 808
Cdd:TIGR03928  545 AELKKRQRLFGENNVNHINQYQKLYKQGKAKEPM---------PHLFLISDEFAELKSEQPEFMKElvSTARI---GRSL 612
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1004391105  809 GIHLVLATQRPSvDVVTGLIKTNVPSRLAFATSSLTDSRVIL 850
Cdd:TIGR03928  613 GVHLILATQKPS-GVVDDQIWSNSRFKLALKVQDASDSNEIL 653
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
651-892 1.51e-12

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 72.33  E-value: 1.51e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  651 SYSVQKMPHLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHlITPIIT--QPKKAAAALQW 728
Cdd:TIGR03928  804 TLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPH-VADYFTldEEEKIEKLIRR 882
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  729 LVEEMEQRYMDMKAARVRKIEDYNRKvisgahqaplgSEREMrpyPYIVCVVDELaDLMMTAP--KEIEESIVRITQKAR 806
Cdd:TIGR03928  883 IKKEIDRRKKLFSEYGVASISMYNKA-----------SGEKL---PQIVIIIDNY-DAVKEEPfyEDFEELLIQLAREGA 947
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  807 AAGIHLVL-ATQRPSVDVVtglIKTNVPSRLAFATSSLTDSRVILdqgGAEKL---------IGMGDGLFIPQGGRPVRM 876
Cdd:TIGR03928  948 SLGIYLVMtAGRQNAVRMP---LMNNIKTKIALYLIDKSEYRSIV---GRTKFtieeipgrgLIKKDEPTLFQTALPVKG 1021
                          250
                   ....*....|....*.
gi 1004391105  877 QGAFVSDEEVQAVVDA 892
Cdd:TIGR03928 1022 EDDLEVIENIKAEIQK 1037
T7_EssCb_Firm TIGR03928
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ...
639-877 1.29e-11

type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274860 [Multi-domain]  Cd Length: 1296  Bit Score: 69.25  E-value: 1.29e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  639 IGLGKDIEG-EYSSYSVQKMPHLLVAGATGSGKSAFVNSMLVSLltrATPEQVRLILVDPKMVELTPYEGIPHLITpIIT 717
Cdd:TIGR03928 1077 IPIGLDEETvEPVYIDLTENPHLLIVGESDDGKTNVLKSLLKTL---AKQEKEKIGLIDSIDRGLLAYRDLKEVAT-YIE 1152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  718 QPKKAAAALQWLVEEMEQRYMDMKAARvrkiedynrkvisgahqaplGSEREMRPYPYIVCVVDELADLMMTAPKEIEES 797
Cdd:TIGR03928 1153 EKEDLKEILAELKEEIELREAAYKEAL--------------------QNETGEPAFKPILLIIDDLEDFIQRTDLEIQDI 1212
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  798 IVRITQKARAAGIHLVLATQRPSV----DVVTGLIKTnvpSRLAFATSSLTDSRVI-LDQGGAEKLIGMGDGLFIpQGGR 872
Cdd:TIGR03928 1213 LALIMKNGKKLGIHFIVAGTHSELsksyDGVPKEIKQ---LRTGILGMRKSDQSFFkLPFTRSEKELEPGEGYFV-VNGK 1288

                   ....*
gi 1004391105  873 PVRMQ 877
Cdd:TIGR03928 1289 YQKIK 1293
T7SS_EccC_b TIGR03925
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ...
659-848 9.44e-07

type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274859 [Multi-domain]  Cd Length: 566  Bit Score: 52.69  E-value: 9.44e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  659 HLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPKMVELTPYEGIPHlITPIITQ--PKKAAAALQWLVEEMEQR 736
Cdd:TIGR03925   81 HVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLASLADLPH-VGGVAGRldPERVRRTVAEVEGLLRRR 159
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  737 YMDMKAARVRKIEDYNRkvisgAHQAPLGSEremRPYPYIVCVVDELADLmMTAPKEIEESIVRITQKARAAGIHLVLAT 816
Cdd:TIGR03925  160 ERLFRTHGIDSMAQYRA-----RRAAGRLPE---DPFGDVFLVIDGWGTL-RQDFEDLEDKVTDLAARGLAYGVHVVLTA 230
                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1004391105  817 -----QRPSV-DVVTGLIKTnvpsRLAFATSSLTDSRV 848
Cdd:TIGR03925  231 srwseIRPALrDLIGTRIEL----RLGDPMDSEIDRRA 264
TrwB_TraG_TraD_VirD4 cd01127
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ...
659-840 1.10e-06

TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.


Pssm-ID: 410871 [Multi-domain]  Cd Length: 144  Bit Score: 49.14  E-value: 1.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  659 HLLVAGATGSGKSAFVNSMLVSLLTRatpeQVRLILVDPKM---VELTPYEGIPHLITPIITqpkkaaAALQWLVEEMeq 735
Cdd:cd01127      1 NTLVLGTTGSGKTTSIVIPLLDQAAR----GGSVIITDPKGelfLVIPDRDDSFAALRALFF------NQLFRALTEL-- 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  736 rymdmkaarvrkiedynrkvisgahqaplGSEREMRPYPYIVCVVDELADLMmtapkeIEESIVRITQKARAAGIHLVLA 815
Cdd:cd01127     69 -----------------------------ASLSPGRLPRRVWFILDEFANLG------RIPNLPNLLATGRKRGISVVLI 113
                          170       180       190
                   ....*....|....*....|....*....|.
gi 1004391105  816 TQ------RPSVDVVTGLIKTNVPSRLAFAT 840
Cdd:cd01127    114 LQslaqleAVYGKDGAQTILGNCNTKLYLGT 144
T7SS_EccC_b TIGR03925
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ...
658-815 6.23e-06

type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274859 [Multi-domain]  Cd Length: 566  Bit Score: 49.99  E-value: 6.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  658 PHLLVAGATGSGKSAFVNSMLVSLLTRATPEQVRLILVDPK--MVELTPYEgipHLITPIITQPKKAAAALQwLVEEMEQ 735
Cdd:TIGR03925  364 PHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRrtLLGAVPED---YLAGYAATSAALTELIAA-LAALLER 439
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  736 RY--MDMKAARVRkiedyNRKVISGahqaplgseremrpyPYIVCVVDELaDLMMTAPKEIEESIVRITQKARAAGIHLV 813
Cdd:TIGR03925  440 RLpgPDVTPQQLR-----ARSWWSG---------------PEIYVVVDDY-DLVATGSGNPLAPLVELLPHARDIGLHVV 498

                   ..
gi 1004391105  814 LA 815
Cdd:TIGR03925  499 VA 500
HerA COG0433
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
619-820 2.27e-05

Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];


Pssm-ID: 440202 [Multi-domain]  Cd Length: 388  Bit Score: 48.06  E-value: 2.27e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  619 VRLRDVLDSPAIASDEDPMLIGLGKDIEGEYSsYSVQKM--PHLLVAGATGSGKSAFVNSMLVSLLTRatpeQVRLILVD 696
Cdd:COG0433      8 VYLADDEELEELLGDGGGILIGKLLSPGVPVY-LDLDKLlnRHILILGATGSGKSNTLQVLLEELSRA----GVPVLVFD 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  697 PK---------------MVELTPYEGIPHLITPI--------------------ITQPKKAAAALQWL------------ 729
Cdd:COG0433     83 PHgeysglaepgaeradVGVFDPGAGRPLPINPWdlfataselgplllsrldlnDTQRGVLREALRLAddkglllldlkd 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  730 -------VEEMEQRYMDMKAARVRKIEDYNRKVISGAH------------------------------------------ 760
Cdd:COG0433    163 lialleeGEELGEEYGNVSAASAGALLRRLESLESADGlfgepgldledllrtdgrvtvidlsglpeelqstfvlwllre 242
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1004391105  761 ---QAPLGSEREMRPYPyIVCVVDELADLMMTAPKEIEESIVRITQKARAAGIHLVLATQRPS 820
Cdd:COG0433    243 lfeARPEVGDADDRKLP-LVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPS 304
FtsK_4TM pfam13491
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ...
112-240 3.93e-05

4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.


Pssm-ID: 463896  Cd Length: 171  Bit Score: 45.27  E-value: 3.93e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1004391105  112 VGVIGAYLTDAVRYVIGAGAYVLPVALIALAMALMMGVSgvagrLQPRVMGGIGLIIvsMLGLIHIFAGLPKLSWRDNAA 191
Cdd:pfam13491   47 GGRFGAWLADLLLQLFGYSAWLLPVALLYWGWRLFRRRS-----LERRWLRLLGFLL--LLLASSALFALRLPSLEFGLP 119
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1004391105  192 GDAGGAIGFAVGQLLEAAFSAYVAVPLLILLIIYGALNVTGITLRQAFD 240
Cdd:pfam13491  120 GGAGGVIGRLLANALVTLLGFTGATLLLLALLAIGLSLVTGFSWLALAE 168
VirB4 COG3451
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
658-697 5.29e-03

Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442674 [Multi-domain]  Cd Length: 546  Bit Score: 40.70  E-value: 5.29e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 1004391105  658 PHLLVAGATGSGKSAFVNSMLVSLLTRatpeQVRLILVDP 697
Cdd:COG3451    205 GNTLILGPSGSGKSFLLKLLLLQLLRY----GARIVIFDP 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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