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Conserved domains on  [gi|1002778021|gb|AMN68089|]
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(2Fe-2S)-binding protein [Psychrobacter sp. P11G5]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11433 super family cl36021
aldehyde oxidoreductase 2Fe-2S subunit; Provisional
 1-165 2.58e-91

aldehyde oxidoreductase 2Fe-2S subunit; Provisional


The actual alignment was detected with superfamily member PRK11433:

Pssm-ID: 236910 [Multi-domain]  Cd Length: 217  Bit Score: 267.02  E-value: 2.58e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIG 80
Cdd:PRK11433   49 ISPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  81 LPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQNWPSHVTTDLQNPDGLLVQEIAERMSGNICRCSAYPNIIK 160
Cdd:PRK11433  128 SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSHVTVDLTAAPELTADEIRERMSGNICRCGAYSNILE 207


                  ....*
gi 1002778021 161 AISQV 165
Cdd:PRK11433  208 AIEDV 212
 
Name Accession Description Interval E-value
PRK11433 PRK11433
aldehyde oxidoreductase 2Fe-2S subunit; Provisional
 1-165 2.58e-91

aldehyde oxidoreductase 2Fe-2S subunit; Provisional


Pssm-ID: 236910 [Multi-domain]  Cd Length: 217  Bit Score: 267.02  E-value: 2.58e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIG 80
Cdd:PRK11433   49 ISPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  81 LPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQNWPSHVTTDLQNPDGLLVQEIAERMSGNICRCSAYPNIIK 160
Cdd:PRK11433  128 SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSHVTVDLTAAPELTADEIRERMSGNICRCGAYSNILE 207


                  ....*
gi 1002778021 161 AISQV 165
Cdd:PRK11433  208 AIEDV 212
CutS COG2080
Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and ...
 1-167 2.10e-83

Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and conversion]; Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441683 [Multi-domain]  Cd Length: 155  Bit Score: 244.62  E-value: 2.10e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIG 80
Cdd:COG2080     1 MMMITLTVNGKPVEVD-VDPDTPLLDVLRDDLGLTGTKFGCGHGQCGACTVLVDGKAVRSCLTLAVQADGKEITTIEGLA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  81 LPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKqnwpshvttdlqNPDgllVQEIAERMSGNICRCSAYPNIIK 160
Cdd:COG2080    80 EDGELHPLQQAFIEHGALQCGYCTPGMIMAAVALLDENP------------NPT---EEEIREALSGNLCRCTGYVRIVR 144


                  ....*..
gi 1002778021 161 AISQVLE 167
Cdd:COG2080   145 AVKRAAA 151
glyceraldDH_gamma NF041020
glyceraldehyde dehydrogenase subunit gamma;
4-162 1.03e-48

glyceraldehyde dehydrogenase subunit gamma;


Pssm-ID: 468949 [Multi-domain]  Cd Length: 162  Bit Score: 156.88  E-value: 1.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   4 LTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIGLPE 83
Cdd:NF041020   11 IRVKVNGVWYEAE-VEPRKLLVHFLRDDLGFTGTHVGCDTSTCGACTVIMNGKSVKSCTVLAVQADGAEITTIEGLSKDG 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002778021  84 SLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQnwPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPNIIKAI 162
Cdd:NF041020   90 KLHPIQEAFWENHALQCGYCTPGMIMQAYFLLKENPN--PTE-------------EEIRDGIHGNLCRCTGYQNIVKAV 153
pucE TIGR03198
xanthine dehydrogenase E subunit; This gene has been characterized in B. subtilis as the ...
 4-165 1.76e-39

xanthine dehydrogenase E subunit; This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.


Pssm-ID: 132242 [Multi-domain]  Cd Length: 151  Bit Score: 133.05  E-value: 1.76e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   4 LTLTINKQDYQLDNlDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIGlPE 83
Cdd:TIGR03198   4 FRFTVNGQAWEVAA-VPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIA-EN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  84 SLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQnwPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPNIIKAIS 163
Cdd:TIGR03198  82 ELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRETPQ--PSD-------------EDMEEGLSGNLCRCTGYGGIIRSAC 146


                  ..
gi 1002778021 164 QV 165
Cdd:TIGR03198 147 RI 148
Fer2_2 pfam01799
[2Fe-2S] binding domain;
75-162 8.12e-32

[2Fe-2S] binding domain;


Pssm-ID: 460336 [Multi-domain]  Cd Length: 73  Bit Score: 110.60  E-value: 8.12e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  75 TIEGIGLPESLsELQQAFKDHDAFQCGYCTPGQICSATALIEEvkqnwpshvttdlqNPDGLLVQEIAERMSGNICRCSA 154
Cdd:pfam01799   1 TIEGLAESGGE-PVQQAFAEAGAVQCGYCTPGMIMSAYALLER--------------NPPPPTEAEIREALSGNLCRCTG 65


                  ....*...
gi 1002778021 155 YPNIIKAI 162
Cdd:pfam01799  66 YRRIVDAV 73
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 4-59 1.90e-05

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 41.61  E-value: 1.90e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002778021   4 LTLTINKQDYQLDnLDPRTTLLDVCRQHlQITGPKkGCDHGQCGACTILINGERVN 59
Cdd:cd00207     1 VTINVPGSGVEVE-VPEGETLLDAAREA-GIDIPY-SCRAGACGTCKVEVVEGEVD 53
 
Name Accession Description Interval E-value
PRK11433 PRK11433
aldehyde oxidoreductase 2Fe-2S subunit; Provisional
 1-165 2.58e-91

aldehyde oxidoreductase 2Fe-2S subunit; Provisional


Pssm-ID: 236910 [Multi-domain]  Cd Length: 217  Bit Score: 267.02  E-value: 2.58e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIG 80
Cdd:PRK11433   49 ISPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  81 LPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQNWPSHVTTDLQNPDGLLVQEIAERMSGNICRCSAYPNIIK 160
Cdd:PRK11433  128 SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSHVTVDLTAAPELTADEIRERMSGNICRCGAYSNILE 207


                  ....*
gi 1002778021 161 AISQV 165
Cdd:PRK11433  208 AIEDV 212
CutS COG2080
Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and ...
 1-167 2.10e-83

Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family [Energy production and conversion]; Aldehyde, CO, or xanthine dehydrogenase, Fe-S subunit, CoxS/CutS family is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441683 [Multi-domain]  Cd Length: 155  Bit Score: 244.62  E-value: 2.10e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIG 80
Cdd:COG2080     1 MMMITLTVNGKPVEVD-VDPDTPLLDVLRDDLGLTGTKFGCGHGQCGACTVLVDGKAVRSCLTLAVQADGKEITTIEGLA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  81 LPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKqnwpshvttdlqNPDgllVQEIAERMSGNICRCSAYPNIIK 160
Cdd:COG2080    80 EDGELHPLQQAFIEHGALQCGYCTPGMIMAAVALLDENP------------NPT---EEEIREALSGNLCRCTGYVRIVR 144


                  ....*..
gi 1002778021 161 AISQVLE 167
Cdd:COG2080   145 AVKRAAA 151
glyceraldDH_gamma NF041020
glyceraldehyde dehydrogenase subunit gamma;
4-162 1.03e-48

glyceraldehyde dehydrogenase subunit gamma;


Pssm-ID: 468949 [Multi-domain]  Cd Length: 162  Bit Score: 156.88  E-value: 1.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   4 LTLTINKQDYQLDnLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIGLPE 83
Cdd:NF041020   11 IRVKVNGVWYEAE-VEPRKLLVHFLRDDLGFTGTHVGCDTSTCGACTVIMNGKSVKSCTVLAVQADGAEITTIEGLSKDG 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002778021  84 SLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQnwPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPNIIKAI 162
Cdd:NF041020   90 KLHPIQEAFWENHALQCGYCTPGMIMQAYFLLKENPN--PTE-------------EEIRDGIHGNLCRCTGYQNIVKAV 153
pucE TIGR03198
xanthine dehydrogenase E subunit; This gene has been characterized in B. subtilis as the ...
 4-165 1.76e-39

xanthine dehydrogenase E subunit; This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.


Pssm-ID: 132242 [Multi-domain]  Cd Length: 151  Bit Score: 133.05  E-value: 1.76e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   4 LTLTINKQDYQLDNlDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIGlPE 83
Cdd:TIGR03198   4 FRFTVNGQAWEVAA-VPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIA-EN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  84 SLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQnwPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPNIIKAIS 163
Cdd:TIGR03198  82 ELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRETPQ--PSD-------------EDMEEGLSGNLCRCTGYGGIIRSAC 146


                  ..
gi 1002778021 164 QV 165
Cdd:TIGR03198 147 RI 148
XdhA COG4630
Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA [Nucleotide transport and ...
 4-173 2.29e-38

Xanthine dehydrogenase, Fe-S cluster and FAD-binding subunit XdhA [Nucleotide transport and metabolism];


Pssm-ID: 443668 [Multi-domain]  Cd Length: 476  Bit Score: 137.96  E-value: 2.29e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   4 LTLTINKQDYQLDNLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILInGER---------VNSCLTLAVMHDGDEIT 74
Cdd:COG4630     1 IRFLLNGELVELSDVPPTTTLLDWLREDRGLTGTKEGCAEGDCGACTVVV-GELddgglryraVNACILFLPQLDGKALV 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  75 TIEGIGLPE-SLSELQQAFKDHDAFQCGYCTPGQICSATALieevkqnWpshvttdlQNPDGLLVQEIAERMSGNICRCS 153
Cdd:COG4630    80 TVEGLAGPDgALHPVQQAMVDHHGSQCGFCTPGFVMSLFAL-------Y--------ERGPAPDRADIEDALSGNLCRCT 144

                         170       180
                  ....*....|....*....|
gi 1002778021 154 AYPNIIKAISQVLENQIADK 173
Cdd:COG4630   145 GYRPIIDAARAMAEAPAPDP 164
PRK09908 PRK09908
xanthine dehydrogenase iron sulfur-binding subunit XdhC;
3-162 6.11e-36

xanthine dehydrogenase iron sulfur-binding subunit XdhC;


Pssm-ID: 182139 [Multi-domain]  Cd Length: 159  Bit Score: 124.26  E-value: 6.11e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   3 TLTLTINKQDYQLdNLDPRTTLLDVCRQHlQITGPKKGCDHGQCGACTILINGERVNSCLTLAVMHDGDEITTIEGIGLP 82
Cdd:PRK09908    8 TIECTINGMPFQL-HAAPGTPLSELLREQ-GLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  83 ESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQNWPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPNIIKAI 162
Cdd:PRK09908   86 GKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTI-------------TEIRRGLAGNLCRCTGYQMIVNTV 152
xanthine_xdhA TIGR02963
xanthine dehydrogenase, small subunit; Members of this protein family are the small subunit ...
 9-173 2.43e-32

xanthine dehydrogenase, small subunit; Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other]


Pssm-ID: 274365 [Multi-domain]  Cd Length: 467  Bit Score: 121.61  E-value: 2.43e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   9 NKQDYQLDNLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILI----NGER-----VNSCLTLAVMHDGDEITTIEGI 79
Cdd:TIGR02963   6 NGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVgelvDGGKlryrsVNACIQFLPSLDGKAVVTVEDL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  80 GLPES-LSELQQAFKDHDAFQCGYCTPGQICSATALieevkqnWPSHvttdlQNPDgllVQEIAERMSGNICRCSAYPNI 158
Cdd:TIGR02963  86 RQPDGrLHPVQQAMVECHGSQCGFCTPGFVMSLYAL-------YKNS-----PAPS---RADIEDALQGNLCRCTGYRPI 150

                         170
                  ....*....|....*
gi 1002778021 159 IKAISQVLENQIADK 173
Cdd:TIGR02963 151 LDAAEAAFDYPCSDP 165
Fer2_2 pfam01799
[2Fe-2S] binding domain;
75-162 8.12e-32

[2Fe-2S] binding domain;


Pssm-ID: 460336 [Multi-domain]  Cd Length: 73  Bit Score: 110.60  E-value: 8.12e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  75 TIEGIGLPESLsELQQAFKDHDAFQCGYCTPGQICSATALIEEvkqnwpshvttdlqNPDGLLVQEIAERMSGNICRCSA 154
Cdd:pfam01799   1 TIEGLAESGGE-PVQQAFAEAGAVQCGYCTPGMIMSAYALLER--------------NPPPPTEAEIREALSGNLCRCTG 65


                  ....*...
gi 1002778021 155 YPNIIKAI 162
Cdd:pfam01799  66 YRRIVDAV 73
PLN00192 PLN00192
aldehyde oxidase
 2-161 3.94e-27

aldehyde oxidase


Pssm-ID: 215096 [Multi-domain]  Cd Length: 1344  Bit Score: 108.26  E-value: 3.94e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021    2 STLTLTINKQDYQLDNLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGE----------RVNSCLTLAVMHDGD 71
Cdd:PLN00192     4 MSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYdpvldqvedfTVSSCLTLLCSVNGC 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   72 EITTIEGIG-LPESLSELQQAFKDHDAFQCGYCTPGQICS-ATALIEEVKQNWPShvttdlqNPDG---LLVQEiAER-M 145
Cdd:PLN00192    84 SITTSEGLGnSKDGFHPIHKRFAGFHASQCGFCTPGMCISlFSALVNADKTDRPE-------PPSGfskLTVVE-AEKaV 155

                          170
                   ....*....|....*.
gi 1002778021  146 SGNICRCSAYPNIIKA 161
Cdd:PLN00192   156 SGNLCRCTGYRPIVDA 171
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 2-161 5.70e-25

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 102.40  E-value: 5.70e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021    2 STLTLTINKQDYQLDNLDPRTTLLDVCRQHLQITGPKKGCDHGQCGACTILINGER----------VNSCLTLAVMHDGD 71
Cdd:TIGR02969    1 PELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNpstksirhhpVNACLTPICSLYGA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   72 EITTIEGIGLPES-LSELQQAFKDHDAFQCGYCTPGQICSATALIEevkqnwpshvttdlQNPDGLLVQeIAERMSGNIC 150
Cdd:TIGR02969   81 AVTTVEGIGSTRTrLHPVQERIAKCHGTQCGFCTPGMVMSMYALLR--------------NHPEPTLDQ-LTDALGGNLC 145

                          170
                   ....*....|.
gi 1002778021  151 RCSAYPNIIKA 161
Cdd:TIGR02969  146 RCTGYRPIIDA 156
PLN02906 PLN02906
xanthine dehydrogenase
 23-161 1.52e-21

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 92.45  E-value: 1.52e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   23 TLLDVCRQhLQITGPKKGCDHGQCGACTIL----------INGERVNSCLTLAVMHDGDEITTIEGIGLPES-LSELQQA 91
Cdd:PLN02906     3 TLLEYLRD-LGLTGTKLGCGEGGCGACTVMvshydrktgkCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDgLHPVQEA 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   92 FKDHDAFQCGYCTPGQICSATALIEEVKQNwPShvttdlqnpdgllVQEIAERMSGNICRCSAYPNIIKA 161
Cdd:PLN02906    82 LASMHGSQCGFCTPGFIMSMYALLRSSKTP-PT-------------EEQIEECLAGNLCRCTGYRPILDA 137
PRK09800 PRK09800
putative hypoxanthine oxidase; Provisional
 3-162 1.54e-06

putative hypoxanthine oxidase; Provisional


Pssm-ID: 182084 [Multi-domain]  Cd Length: 956  Bit Score: 48.29  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   3 TLTLTINKQDYQL-----DNLDprtTLLDVCRQHlQITGPKKGcdHGQCGACTILINGERVNSCLTLAVMHDGDEITTIE 77
Cdd:PRK09800    2 IIHFTLNGAPQELtvnpgENVQ---KLLFNMGMH-SVRNSDDG--FGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAE 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  78 GIGLPESLSELQQAFKDHDAFQCGYCTPGQICSATALIEEVKQnwPSHvttdlqnpdgllvQEIAERMSGNICRCSAYPN 157
Cdd:PRK09800   76 SLGKWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAA--PTR-------------EEIDDALSGLFSRDAGWQQ 140


                  ....*
gi 1002778021 158 IIKAI 162
Cdd:PRK09800  141 YYQVI 145
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 4-59 1.90e-05

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 41.61  E-value: 1.90e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002778021   4 LTLTINKQDYQLDnLDPRTTLLDVCRQHlQITGPKkGCDHGQCGACTILINGERVN 59
Cdd:cd00207     1 VTINVPGSGVEVE-VPEGETLLDAAREA-GIDIPY-SCRAGACGTCKVEVVEGEVD 53
Fer2_3 pfam13085
2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core ...
 11-77 3.50e-05

2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which abeta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated.


Pssm-ID: 432963 [Multi-domain]  Cd Length: 107  Bit Score: 41.45  E-value: 3.50e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002778021  11 QDYQLDNlDPRTTLLDvCRQHL--QITGP---KKGCDHGQCGACTILINGERVNSCLTLaVMHDGDEITTIE 77
Cdd:pfam13085  19 QEYEVPY-EEGMTVLD-ALNKIkeEQDPTlafRRSCREGICGSCAMNINGKPRLACKTL-IDDLLGQDITLE 87
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
6-63 1.90e-04

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 38.66  E-value: 1.90e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1002778021   6 LTINKQDYQLDNLDPRTTLLDVCRQHLqiTGPKKGCDHGQCGACTILINGERVNSCLT 63
Cdd:pfam00111   1 VTINGKGVTIEVPDGETTLLDAAEEAG--IDIPYSCRGGGCGTCAVKVLEGEDQSDQS 56
SdhB/FrdB COG0479
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and ...
 11-77 8.61e-04

Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440247 [Multi-domain]  Cd Length: 230  Bit Score: 38.96  E-value: 8.61e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002778021  11 QDYQLDnLDPRTTLLDVCRQ-HLQITGP---KKGCDHGQCGACTILINGERVNSCLTLavMHD-GDEItTIE 77
Cdd:COG0479    21 QTYEVP-VSPGMTVLDALDYiKEEQDPTlafRRSCREGICGSCAMVINGRPRLACQTH--VRDlKDTI-TIE 88
PRK06259 PRK06259
succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
 1-82 1.38e-03

succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional


Pssm-ID: 235756 [Multi-domain]  Cd Length: 486  Bit Score: 39.22  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021   1 MSTLTLTINKQDYQLD---------NLDPRTTLLDVCRQHLQITGP----KKGCDHGQCGACTILINGERVNSCLTLAvm 67
Cdd:PRK06259    1 MKMITITVKRFDPEKDephfesyevPVKEGMTVLDALEYINKTYDAniafRSSCRAGQCGSCAVTINGEPVLACKTEV-- 78

                          90
                  ....*....|....*
gi 1002778021  68 HDGDeitTIEGIGLP 82
Cdd:PRK06259   79 EDGM---IIEPLDFP 90
sdhB PRK05950
succinate dehydrogenase iron-sulfur subunit; Reviewed
 11-82 3.23e-03

succinate dehydrogenase iron-sulfur subunit; Reviewed


Pssm-ID: 235652 [Multi-domain]  Cd Length: 232  Bit Score: 37.47  E-value: 3.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002778021  11 QDYQLDNLDPRTTLLDVCrqhLQITGPKKG-------CDHGQCGACTILINGERVNSCLTLavMHD--GDEItTIEGI-G 80
Cdd:PRK05950   18 QTYEVDVDECGPMVLDAL---IKIKNEIDPtltfrrsCREGVCGSDAMNINGKNGLACITP--ISDlkKGKI-VIRPLpG 91


                  ..
gi 1002778021  81 LP 82
Cdd:PRK05950   92 LP 93
PRK12576 PRK12576
succinate dehydrogenase/fumarate reductase iron-sulfur subunit;
11-77 5.31e-03

succinate dehydrogenase/fumarate reductase iron-sulfur subunit;


Pssm-ID: 237143 [Multi-domain]  Cd Length: 279  Bit Score: 37.04  E-value: 5.31e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002778021  11 QDYQLDnLDPRTTLLDVCRQHLQITGP----KKGCDHGQCGACTILINGERVNSCLTLA--VMHDGDEITTIE 77
Cdd:PRK12576   25 QEYKVK-VDRFTQVTEALRRIKEEQDPtlsyRASCHMAVCGSCGMKINGEPRLACKTLVldVAKKYNSVITIE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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