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Conserved domains on  [gi|961582316|gb|ALS80484|]
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cell wall-binding protein [Bacillus subtilis subsp. subtilis]

Protein Classification

SH3 domain-containing protein( domain architecture ID 11459669)

uncharacterized SH3 (SRC Homology 3) domain-containing protein may interact with other proteins; SH3 domains are protein interaction domains that bind proline-rich ligands

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YgiM COG3103
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family ...
 50-169 1.63e-14

Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family [General function prediction only];


:

Pssm-ID: 442337 [Multi-domain]  Cd Length: 119  Bit Score: 66.30  E-value: 1.63e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961582316  50 YLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNaDWAKVQYKNGKIGFVSTHYIVKAATTVKTKTKT---KVYTSA 126
Cdd:COG3103    7 YVVDADALNVRSGPGTSYRIVGTLPKGEKVTVLGRSG-GWYKVRYSNGKTGWVSSRYLTVTPSARERLPDElnlRAGPST 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 961582316 127 DGKSIKTLPADTSVSFLGWSKtnkggfdfDWVFVDYGGaTGYM 169
Cdd:COG3103   86 SSEVLGLLPKGETVTVLKKSG--------GWFKVGYRG-TGWV 119
 
Name Accession Description Interval E-value
YgiM COG3103
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family ...
 50-169 1.63e-14

Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family [General function prediction only];


Pssm-ID: 442337 [Multi-domain]  Cd Length: 119  Bit Score: 66.30  E-value: 1.63e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961582316  50 YLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNaDWAKVQYKNGKIGFVSTHYIVKAATTVKTKTKT---KVYTSA 126
Cdd:COG3103    7 YVVDADALNVRSGPGTSYRIVGTLPKGEKVTVLGRSG-GWYKVRYSNGKTGWVSSRYLTVTPSARERLPDElnlRAGPST 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 961582316 127 DGKSIKTLPADTSVSFLGWSKtnkggfdfDWVFVDYGGaTGYM 169
Cdd:COG3103   86 SSEVLGLLPKGETVTVLKKSG--------GWFKVGYRG-TGWV 119
SH3_3 pfam08239
Bacterial SH3 domain;
55-107 9.15e-12

Bacterial SH3 domain;


Pssm-ID: 462405 [Multi-domain]  Cd Length: 54  Bit Score: 57.26  E-value: 9.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 961582316   55 EALNVRTKPSASSQKADTLHLGDSLKLISFSNADWAKVQYKNGKIGFVSTHYI 107
Cdd:pfam08239   1 SGLNVRSGPSTSSEVVGTLPKGEKVEVLEEQGGGWYKVRTYDGYEGWVSSSYL 53
SH3b smart00287
Bacterial SH3 domain homologues;
48-104 2.59e-11

Bacterial SH3 domain homologues;


Pssm-ID: 214600 [Multi-domain]  Cd Length: 63  Bit Score: 56.19  E-value: 2.59e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 961582316    48 DSYLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNADWAKVQYKNGKIGFVST 104
Cdd:smart00287   2 ETAVVTGDGLNVRTGPGTSSPIIGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPG 58
tagH PRK13545
teichoic acids export protein ATP-binding subunit; Provisional
 50-107 1.45e-04

teichoic acids export protein ATP-binding subunit; Provisional


Pssm-ID: 184130 [Multi-domain]  Cd Length: 549  Bit Score: 41.41  E-value: 1.45e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 961582316  50 YLVSAEALNVRTKPSASSQKADTLHLGDSLKlISFSN------ADWAKVQYKNGKIGFVSTHYI 107
Cdd:PRK13545 349 YIVNSNGISIREEADASSKRLAVANFGDIFT-ISDSNknekkdVEWIQITLSNGEIGWISTKFI 411
 
Name Accession Description Interval E-value
YgiM COG3103
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family ...
 50-169 1.63e-14

Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family [General function prediction only];


Pssm-ID: 442337 [Multi-domain]  Cd Length: 119  Bit Score: 66.30  E-value: 1.63e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 961582316  50 YLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNaDWAKVQYKNGKIGFVSTHYIVKAATTVKTKTKT---KVYTSA 126
Cdd:COG3103    7 YVVDADALNVRSGPGTSYRIVGTLPKGEKVTVLGRSG-GWYKVRYSNGKTGWVSSRYLTVTPSARERLPDElnlRAGPST 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 961582316 127 DGKSIKTLPADTSVSFLGWSKtnkggfdfDWVFVDYGGaTGYM 169
Cdd:COG3103   86 SSEVLGLLPKGETVTVLKKSG--------GWFKVGYRG-TGWV 119
SH3_3 pfam08239
Bacterial SH3 domain;
55-107 9.15e-12

Bacterial SH3 domain;


Pssm-ID: 462405 [Multi-domain]  Cd Length: 54  Bit Score: 57.26  E-value: 9.15e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 961582316   55 EALNVRTKPSASSQKADTLHLGDSLKLISFSNADWAKVQYKNGKIGFVSTHYI 107
Cdd:pfam08239   1 SGLNVRSGPSTSSEVVGTLPKGEKVEVLEEQGGGWYKVRTYDGYEGWVSSSYL 53
SH3b smart00287
Bacterial SH3 domain homologues;
48-104 2.59e-11

Bacterial SH3 domain homologues;


Pssm-ID: 214600 [Multi-domain]  Cd Length: 63  Bit Score: 56.19  E-value: 2.59e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 961582316    48 DSYLVSAEALNVRTKPSASSQKADTLHLGDSLKLISFSNADWAKVQYKNGKIGFVST 104
Cdd:smart00287   2 ETAVVTGDGLNVRTGPGTSSPIIGTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPG 58
tagH PRK13545
teichoic acids export protein ATP-binding subunit; Provisional
 50-107 1.45e-04

teichoic acids export protein ATP-binding subunit; Provisional


Pssm-ID: 184130 [Multi-domain]  Cd Length: 549  Bit Score: 41.41  E-value: 1.45e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 961582316  50 YLVSAEALNVRTKPSASSQKADTLHLGDSLKlISFSN------ADWAKVQYKNGKIGFVSTHYI 107
Cdd:PRK13545 349 YIVNSNGISIREEADASSKRLAVANFGDIFT-ISDSNknekkdVEWIQITLSNGEIGWISTKFI 411
SH3 smart00326
Src homology 3 domains; Src homology 3 (SH3) domains bind to target proteins through sequences ...
 67-107 5.26e-03

Src homology 3 domains; Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.


Pssm-ID: 214620 [Multi-domain]  Cd Length: 56  Bit Score: 33.67  E-value: 5.26e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 961582316    67 SQKADTLHL--GDSLKLISFSNADWAKVQYKNGKIGFVSTHYI 107
Cdd:smart00326  13 AQDPDELSFkkGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55
SH3_1 pfam00018
SH3 domain; SH3 (Src homology 3) domains are often indicative of a protein involved in signal ...
 72-102 5.56e-03

SH3 domain; SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organization. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel.


Pssm-ID: 394975 [Multi-domain]  Cd Length: 47  Bit Score: 33.72  E-value: 5.56e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 961582316   72 TLHLGDSLKLISFSNADWAKVQYKNGKIGFV 102
Cdd:pfam00018  15 SFKKGDIIIVLEKSEDGWWKGRNKGGKEGLI 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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