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Conserved domains on  [gi|957775357|gb|ALQ29119|]
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hypothetical protein ATC04_00215 [Arthrobacter sp. YC-RL1]

Protein Classification

PH domain-containing protein( domain architecture ID 10007325)

PH domain-containing protein similar to Bacillus subtilis UPF0699 transmembrane protein YdbS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdbS COG3402
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 15-158 1.67e-30

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


:

Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 107.60  E-value: 1.67e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957775357  15 VAPEYFTVKLIGWALNTALYLLIALVPLILRLFgvqtPNWLAIAPPLAVLLVALLVLRLLRRRV-RALGYLEREEDLVVR 93
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLAVLALLLDF----PPWLGWVLLALVVVLAVLSLVLAPPLRyRRWRYEVREDDLYIR 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 957775357  94 SGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSATAVIPGLGQRTGEDLRERLSA 158
Cdd:COG3402   77 RGVLFRRRTVVPYGRIQHVDTEQGPLERLFGLATVTVTTAGSSGDVTIPGLPEEEAERLRDRLAA 141
 
Name Accession Description Interval E-value
YdbS COG3402
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 15-158 1.67e-30

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 107.60  E-value: 1.67e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957775357  15 VAPEYFTVKLIGWALNTALYLLIALVPLILRLFgvqtPNWLAIAPPLAVLLVALLVLRLLRRRV-RALGYLEREEDLVVR 93
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLAVLALLLDF----PPWLGWVLLALVVVLAVLSLVLAPPLRyRRWRYEVREDDLYIR 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 957775357  94 SGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSATAVIPGLGQRTGEDLRERLSA 158
Cdd:COG3402   77 RGVLFRRRTVVPYGRIQHVDTEQGPLERLFGLATVTVTTAGSSGDVTIPGLPEEEAERLRDRLAA 141
bPH_2 pfam03703
Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies ...
 82-156 1.29e-14

Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.


Pssm-ID: 427450 [Multi-domain]  Cd Length: 78  Bit Score: 64.93  E-value: 1.29e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 957775357   82 GYLEREEDLVVRSGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSaTAVIPGLGQRTGEDLRERL 156
Cdd:pfam03703   5 GYTITDRRVVVRSGILGRKRVDIPLERIQDVSLSQSPLQRRLGLGTIVIDTAGGS-GVRLPLRDVPDAEELREWL 78
 
Name Accession Description Interval E-value
YdbS COG3402
Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain ...
 15-158 1.67e-30

Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442629 [Multi-domain]  Cd Length: 143  Bit Score: 107.60  E-value: 1.67e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 957775357  15 VAPEYFTVKLIGWALNTALYLLIALVPLILRLFgvqtPNWLAIAPPLAVLLVALLVLRLLRRRV-RALGYLEREEDLVVR 93
Cdd:COG3402    1 LSPRAVKVWRLRALIGALILLAVLAVLALLLDF----PPWLGWVLLALVVVLAVLSLVLAPPLRyRRWRYEVREDDLYIR 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 957775357  94 SGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSATAVIPGLGQRTGEDLRERLSA 158
Cdd:COG3402   77 RGVLFRRRTVVPYGRIQHVDTEQGPLERLFGLATVTVTTAGSSGDVTIPGLPEEEAERLRDRLAA 141
bPH_2 pfam03703
Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies ...
 82-156 1.29e-14

Bacterial PH domain; Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.


Pssm-ID: 427450 [Multi-domain]  Cd Length: 78  Bit Score: 64.93  E-value: 1.29e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 957775357   82 GYLEREEDLVVRSGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSaTAVIPGLGQRTGEDLRERL 156
Cdd:pfam03703   5 GYTITDRRVVVRSGILGRKRVDIPLERIQDVSLSQSPLQRRLGLGTIVIDTAGGS-GVRLPLRDVPDAEELREWL 78
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 82-158 2.02e-13

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 66.65  E-value: 2.02e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 957775357  82 GYLEREEDLVVRSGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSATAVIPGLGQRTGEDLRERLSA 158
Cdd:COG3428  332 GYALTGDYLVVRSGFLTRRTVVVPRDRIQSVRLSQSPFQRRLGLATVRVDTAAGPGSYTVPDLDAEDARALAAWLLP 408
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 87-162 1.64e-10

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 58.18  E-value: 1.64e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 957775357  87 EEDLVVRSGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSATAV-IPGLGQRTGEDLRERLSAAGEA 162
Cdd:COG3428   72 DDRLIVRSGVLSRKRREIPLDRIQSVDVSQPLLHRLFGLGTVRIETAGGGESEVeLDALSVPEAERLRRLLLERAAG 148
YdbT COG3428
Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain ...
 84-137 2.38e-05

Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain [Function unknown];


Pssm-ID: 442654 [Multi-domain]  Cd Length: 410  Bit Score: 43.16  E-value: 2.38e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 957775357  84 LEREED-LVVRSGVMWRKQLVIPYGRMQYVEVTSGPLERKYGLCKLTLNTASGSA 137
Cdd:COG3428  228 LTRSGDgLRIRRGLLTRRSVTIPLDRIQAVRIKQPLLRRLFGWARLEVEVAGYGE 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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