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Conserved domains on  [gi|937829658|gb|ALI99515|]
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50S ribosomal protein L30 [Rufibacter tibetensis]

Protein Classification

uL30 family ribosomal protein( domain architecture ID 10012504)

uL30 family ribosomal protein, such as 50S ribosomal protein L30, which binds the 23SrRNA as well as the 5S rRNA

Gene Ontology:  GO:0006412|GO:0015934|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 1-59 6.18e-23

50S ribosomal protein L30; Reviewed


:

Pssm-ID: 180163  Cd Length: 59  Bit Score: 81.69  E-value: 6.18e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 937829658  1 MASVEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKEV 59
Cdd:PRK05611  1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEEV 59
 
Name Accession Description Interval E-value
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 1-59 6.18e-23

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 81.69  E-value: 6.18e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 937829658  1 MASVEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKEV 59
Cdd:PRK05611  1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEEV 59
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-58 3.49e-22

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 79.70  E-value: 3.49e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 937829658  1 MASVEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKE 58
Cdd:COG1841   1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVEE 58
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 6-56 1.72e-19

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 72.84  E-value: 1.72e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 937829658  6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSI 56
Cdd:cd01658   3 ITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKV 53
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 6-54 1.85e-17

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 67.34  E-value: 1.85e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 937829658   6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLV 54
Cdd:pfam00327  3 VTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 4-58 7.42e-16

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 63.49  E-value: 7.42e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937829658   4 VEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKE 58
Cdd:TIGR01308  1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVEE 55
 
Name Accession Description Interval E-value
rpmD PRK05611
50S ribosomal protein L30; Reviewed
 1-59 6.18e-23

50S ribosomal protein L30; Reviewed


Pssm-ID: 180163  Cd Length: 59  Bit Score: 81.69  E-value: 6.18e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 937829658  1 MASVEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKEV 59
Cdd:PRK05611  1 MKTLKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLVKVEEV 59
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-58 3.49e-22

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 79.70  E-value: 3.49e-22
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 937829658  1 MASVEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKE 58
Cdd:COG1841   1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTVEE 58
Ribosomal_L30 cd01658
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 6-56 1.72e-19

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100100  Cd Length: 54  Bit Score: 72.84  E-value: 1.72e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 937829658  6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSI 56
Cdd:cd01658   3 ITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLVKV 53
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 6-56 7.90e-18

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 68.59  E-value: 7.90e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 937829658  6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSI 56
Cdd:cd00355   2 VTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTV 52
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 6-54 1.85e-17

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 67.34  E-value: 1.85e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 937829658   6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLV 54
Cdd:pfam00327  3 VTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
rpmD_bact TIGR01308
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ...
 4-58 7.42e-16

ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130375  Cd Length: 55  Bit Score: 63.49  E-value: 7.42e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937829658   4 VEITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLVSIKE 58
Cdd:TIGR01308  1 IKVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVHEDNPAIRGMVNKVKHLVKVEE 55
rpl30p PRK06049
50S ribosomal protein L30P; Reviewed
 6-54 3.08e-04

50S ribosomal protein L30P; Reviewed


Pssm-ID: 235683  Cd Length: 154  Bit Score: 35.94  E-value: 3.08e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 937829658   6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLV 54
Cdd:PRK06049   5 VIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYV 53
Ribosomal_L7_archeal_euk cd01657
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ...
 6-54 3.60e-04

Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.


Pssm-ID: 100099  Cd Length: 159  Bit Score: 35.58  E-value: 3.60e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 937829658   6 ITQIKSIIDRPERQKQTMKALGLGKINRTVTKELTPQIAGMVNRVQHLV 54
Cdd:cd01657    4 VVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYV 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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