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Conserved domains on  [gi|830871923|gb|AKL90076|]
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excinuclease ABC subunit C, partial [Limosilactobacillus fermentum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uvrC super family cl35109
excinuclease ABC subunit UvrC;
2-172 1.18e-77

excinuclease ABC subunit UvrC;


The actual alignment was detected with superfamily member PRK00558:

Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.95  E-value: 1.18e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558 111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558 191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                        170
                 ....*....|....*
gi 830871923 158 QARLMKREKRLFPVV 172
Cdd:PRK00558 271 GGKLLGRRSYFPKVS 285
 
Name Accession Description Interval E-value
uvrC PRK00558
excinuclease ABC subunit UvrC;
2-172 1.18e-77

excinuclease ABC subunit UvrC;


Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.95  E-value: 1.18e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558 111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558 191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                        170
                 ....*....|....*
gi 830871923 158 QARLMKREKRLFPVV 172
Cdd:PRK00558 271 GGKLLGRRSYFPKVS 285
UvrC COG0322
Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];
2-172 9.18e-73

Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];


Pssm-ID: 440091 [Multi-domain]  Cd Length: 603  Bit Score: 229.24  E-value: 9.18e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGY----QGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:COG0322  112 PRIFVTRGVKKDGGRYFGPYPSAGAVRETLDLLQKLFPLRTCSDSlfknRSRPCLLYQIGRCSAPCVGLISEEEYREDVE 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:COG0322  192 QARRFLEGKTKELIKELEEKMEEAAEELEFERAARLRDQIRALEKVQEKQKVVLPDGGDADVIAIARDGGEACVQVFFVR 271

                        170
                 ....*....|....*
gi 830871923 158 QARLMKREKRLFPVV 172
Cdd:COG0322  272 GGRLIGRRSFFLEKV 286
uvrC TIGR00194
excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC ...
 2-171 2.70e-56

excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 272953 [Multi-domain]  Cd Length: 574  Bit Score: 185.65  E-value: 2.70e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923    2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQ-GRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIK 80
Cdd:TIGR00194 106 PRLLITRKLKQDKGKYFGPFTNAFALRETLDLLLKLFPLRKCAKHNrNRPCLYYQIGRCLGPCVKEITEEEYQQIVEKIE 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   81 SFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:TIGR00194 186 LFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGK 265

                         170
                  ....*....|.
gi 830871923  161 LMKREKRLFPV 171
Cdd:TIGR00194 266 LIGRDQFDFSL 276
UVR pfam02151
UvrB/uvrC motif;
89-121 8.77e-06

UvrB/uvrC motif;


Pssm-ID: 308001 [Multi-domain]  Cd Length: 36  Bit Score: 40.84  E-value: 8.77e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 830871923   89 QVKKQLTARMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:pfam02151   2 KLIKELEEEMEEAAENEDFEKAAKLRDQINALK 34
 
Name Accession Description Interval E-value
uvrC PRK00558
excinuclease ABC subunit UvrC;
2-172 1.18e-77

excinuclease ABC subunit UvrC;


Pssm-ID: 234792 [Multi-domain]  Cd Length: 598  Bit Score: 241.95  E-value: 1.18e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC----HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK00558 111 PRLAITRGVAKDKGRYFGPYPSAGAVRETLDLLQKLFPLRTCedsvFKNRKRPCLLYQIGRCLAPCVGLISKEEYAELVD 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK00558 191 EAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKVSLKDGEDADVIAIAVDGGWACVQVFFVR 270

                        170
                 ....*....|....*
gi 830871923 158 QARLMKREKRLFPVV 172
Cdd:PRK00558 271 GGKLLGRRSYFPKVS 285
UvrC COG0322
Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];
2-172 9.18e-73

Excinuclease UvrABC, nuclease subunit [Replication, recombination and repair];


Pssm-ID: 440091 [Multi-domain]  Cd Length: 603  Bit Score: 229.24  E-value: 9.18e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGY----QGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:COG0322  112 PRIFVTRGVKKDGGRYFGPYPSAGAVRETLDLLQKLFPLRTCSDSlfknRSRPCLLYQIGRCSAPCVGLISEEEYREDVE 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:COG0322  192 QARRFLEGKTKELIKELEEKMEEAAEELEFERAARLRDQIRALEKVQEKQKVVLPDGGDADVIAIARDGGEACVQVFFVR 271

                        170
                 ....*....|....*
gi 830871923 158 QARLMKREKRLFPVV 172
Cdd:COG0322  272 GGRLIGRRSFFLEKV 286
uvrC TIGR00194
excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC ...
 2-171 2.70e-56

excinuclease ABC, C subunit; This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 272953 [Multi-domain]  Cd Length: 574  Bit Score: 185.65  E-value: 2.70e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923    2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQ-GRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIK 80
Cdd:TIGR00194 106 PRLLITRKLKQDKGKYFGPFTNAFALRETLDLLLKLFPLRKCAKHNrNRPCLYYQIGRCLGPCVKEITEEEYQQIVEKIE 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   81 SFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:TIGR00194 186 LFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGK 265

                         170
                  ....*....|.
gi 830871923  161 LMKREKRLFPV 171
Cdd:TIGR00194 266 LIGRDQFDFSL 276
uvrC PRK14666
excinuclease ABC subunit C; Provisional
 2-169 2.70e-41

excinuclease ABC subunit C; Provisional


Pssm-ID: 237782 [Multi-domain]  Cd Length: 694  Bit Score: 146.57  E-value: 2.70e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCH----GYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK14666 110 PRLEIVRKARRDGARYFGPFTSASAARETWKTIHRAFPLRRCSdrafGNRVRACLYHFMGQCLGPCVNDVPRETYAALVR 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIR 157
Cdd:PRK14666 190 KVEMLLSGRSGELVDALRTEMEAASEALEFERAAVLRDQIRAVERTVERQAAVLPGGGDLDVVGLVEAEGGLALGVLFVR 269

                        170
                 ....*....|..
gi 830871923 158 QARLMkrEKRLF 169
Cdd:PRK14666 270 QGVLL--DGRAF 279
uvrC PRK14669
excinuclease ABC subunit C; Provisional
 2-169 6.84e-32

excinuclease ABC subunit C; Provisional


Pssm-ID: 237784 [Multi-domain]  Cd Length: 624  Bit Score: 120.01  E-value: 6.84e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCH----GYQGRPCLYYHLGQCLGCCFKEVP-EEEYAVQT 76
Cdd:PRK14669 111 PRVYVTRRLRKDGAQYYGPFFPANLAYRLVDLIHRHFLVPSCKvdltRYHPRPCLQFYIHRCLGPCVQGLTtDEAYAEAV 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  77 KRIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFI 156
Cdd:PRK14669 191 RDVRLFLEGRHSDLARSLRARMEAAALEMQFELAAKYRDLITTVEELEEKQRMAAAKGDDADVFGYHYENPMVAVNLFHM 270

                        170
                 ....*....|...
gi 830871923 157 RQARLMKREKRLF 169
Cdd:PRK14669 271 RGGKIVDRREFFW 283
uvrC PRK14670
excinuclease ABC subunit C; Provisional
 2-165 6.98e-26

excinuclease ABC subunit C; Provisional


Pssm-ID: 173133 [Multi-domain]  Cd Length: 574  Bit Score: 102.68  E-value: 6.98e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQTKRIKS 81
Cdd:PRK14670  90 PRIFKTRKIINDGSEYFGPYVNVKKLDLVLDLINKTFKTRKCKKKSKNPCLYFHMGQCLGVCYREDLEKEYQKEVDKIKH 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  82 FLNGNTAQVKKQLTARMERAAGQLEFERAAEIRD-QLHYIEVTvEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQAR 160
Cdd:PRK14670 170 ILNGNISKLLSQIEIKMKEAIQKEDFEAAIKLKEtKRSLIEIS-QTQIITKINKLSIDYVYIHPTENLNTIVILKYKDGK 248


                 ....*
gi 830871923 161 LMKRE 165
Cdd:PRK14670 249 LVEKD 253
uvrC PRK14667
excinuclease ABC subunit C; Provisional
 2-165 9.33e-24

excinuclease ABC subunit C; Provisional


Pssm-ID: 237783 [Multi-domain]  Cd Length: 567  Bit Score: 96.73  E-value: 9.33e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYyFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTKRI 79
Cdd:PRK14667 111 PTVKIVRGTGEKGEY-FGPFLPARKARKVKKLIHKLFKLRTCDPMPKRkePCMDYHLGLCSGPCCGKISKEDYELSVKSA 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  80 KSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLsiqvFFIRQA 159
Cdd:PRK14667 190 KAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALENLIKGQEVSGLPIEEADIFYFMGSRLGL----FLVRSS 265


                 ....*.
gi 830871923 160 RLMKRE 165
Cdd:PRK14667 266 KLVGKE 271
PRK07883 PRK07883
DEDD exonuclease domain-containing protein;
2-129 2.44e-23

DEDD exonuclease domain-containing protein;


Pssm-ID: 236123 [Multi-domain]  Cd Length: 557  Bit Score: 95.37  E-value: 2.44e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC------HGYQGRPCLYYHLGQCLGCCFKEVPEEEYAVQ 75
Cdd:PRK07883 313 PRLSVVRAVEDDGAAYLGPFRSRRAAEEAAEALARAFPLRQCtdrlsrRARHGPACALAELGRCPAPCDGRESAAEYAEA 392

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 830871923  76 TKRIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLH-YIEVTVEKQKI 129
Cdd:PRK07883 393 VARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAaLLRALARAQRL 447
uvrC PRK14668
excinuclease ABC subunit C; Provisional
 2-121 4.79e-22

excinuclease ABC subunit C; Provisional


Pssm-ID: 184785 [Multi-domain]  Cd Length: 577  Bit Score: 91.75  E-value: 4.79e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITgQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRC--HGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTK 77
Cdd:PRK14668 109 PRIEVT-RDPDEGATVFGPYTDKGRVETVVKALRETYGLRGCsdHKYSNRdrPCLDYEMGLCTAPCTGEIDEEAYAEDVE 187

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 830871923  78 RIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:PRK14668 188 SAERFFEGETGVLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231
uvrC PRK14672
excinuclease ABC subunit C; Provisional
 2-165 1.03e-21

excinuclease ABC subunit C; Provisional


Pssm-ID: 173135 [Multi-domain]  Cd Length: 691  Bit Score: 90.95  E-value: 1.03e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923   2 PIIKITGQVKKDGAYYFGPYPNVYAAEETVHFIQKVFPLRRCHGYQGR--PCLYYHLGQCLGCCFKEVPEEEYAVQTKRI 79
Cdd:PRK14672 116 PRIFRTRQFCQDGARYFGPFPDVQILDSFLKLILRTYKIRTCTTLRKRknPCLYYHLKRCDAPCCGWVSPRTYQKDIHEI 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 830871923  80 KSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIEVTVEKQKIISNDKTPRDLFNFYLDKGWLSIQVFFIRQA 159
Cdd:PRK14672 196 TLLLEGNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDMDERARDYIAWSSTGAIVTFAVLRMRGG 275


                 ....*.
gi 830871923 160 RLMKRE 165
Cdd:PRK14672 276 KLNGRE 281
UvrB COG0556
Excinuclease UvrABC helicase subunit UvrB [Replication, recombination and repair];
69-121 6.89e-08

Excinuclease UvrABC helicase subunit UvrB [Replication, recombination and repair];


Pssm-ID: 440322 [Multi-domain]  Cd Length: 657  Bit Score: 50.78  E-value: 6.89e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 830871923  69 EEEYAVQTKRIKSFLNGNTAQVKKQLTARMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:COG0556  603 ETEELVAEADAAKLSKEELEKLIKELEKEMKEAAKNLEFEEAARLRDEIKELK 655
PRK05298 PRK05298
excinuclease ABC subunit UvrB;
92-118 1.53e-06

excinuclease ABC subunit UvrB;


Pssm-ID: 235395 [Multi-domain]  Cd Length: 652  Bit Score: 46.96  E-value: 1.53e-06
                         10        20
                 ....*....|....*....|....*..
gi 830871923  92 KQLTARMERAAGQLEFERAAEIRDQLH 118
Cdd:PRK05298 616 KELEKQMKEAAKNLEFEEAARLRDEIK 642
UVR pfam02151
UvrB/uvrC motif;
89-121 8.77e-06

UvrB/uvrC motif;


Pssm-ID: 308001 [Multi-domain]  Cd Length: 36  Bit Score: 40.84  E-value: 8.77e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 830871923   89 QVKKQLTARMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:pfam02151   2 KLIKELEEEMEEAAENEDFEKAAKLRDQINALK 34
McsA COG3880
Protein-arginine kinase activator protein McsA [Posttranslational modification, protein ...
 85-121 5.76e-03

Protein-arginine kinase activator protein McsA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443088 [Multi-domain]  Cd Length: 173  Bit Score: 35.64  E-value: 5.76e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 830871923  85 GNTAQVKKQ---LTARMERAAGQLEFERAAEIRDQLHYIE 121
Cdd:COG3880  126 GGRLRIKREieeLKEELQEAVEKEEYEEAAELRDEIRELE 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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