carbamoyl phosphate synthase large subunit, partial [Limosilactobacillus fermentum]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
carB super family | cl35300 | carbamoyl-phosphate synthase large subunit; |
1-172 | 4.67e-110 | ||||
carbamoyl-phosphate synthase large subunit; The actual alignment was detected with superfamily member PRK05294: Pssm-ID: 235393 [Multi-domain] Cd Length: 1066 Bit Score: 336.68 E-value: 4.67e-110
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Name | Accession | Description | Interval | E-value | ||||
carB | PRK05294 | carbamoyl-phosphate synthase large subunit; |
1-172 | 4.67e-110 | ||||
carbamoyl-phosphate synthase large subunit; Pssm-ID: 235393 [Multi-domain] Cd Length: 1066 Bit Score: 336.68 E-value: 4.67e-110
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CPSaseII_lrg | TIGR01369 | carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ... |
1-172 | 3.00e-96 | ||||
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis] Pssm-ID: 273581 [Multi-domain] Cd Length: 1050 Bit Score: 299.99 E-value: 3.00e-96
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CarB | COG0458 | Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ... |
1-172 | 1.13e-74 | ||||
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis Pssm-ID: 440226 [Multi-domain] Cd Length: 536 Bit Score: 232.85 E-value: 1.13e-74
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CPSase_L_D2 | pfam02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ... |
1-50 | 6.13e-20 | ||||
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Pssm-ID: 397079 [Multi-domain] Cd Length: 209 Bit Score: 82.35 E-value: 6.13e-20
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CPSase_L_D3 | smart01096 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate ... |
138-172 | 6.41e-12 | ||||
Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. Pssm-ID: 198164 [Multi-domain] Cd Length: 124 Bit Score: 59.39 E-value: 6.41e-12
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Name | Accession | Description | Interval | E-value | ||||
carB | PRK05294 | carbamoyl-phosphate synthase large subunit; |
1-172 | 4.67e-110 | ||||
carbamoyl-phosphate synthase large subunit; Pssm-ID: 235393 [Multi-domain] Cd Length: 1066 Bit Score: 336.68 E-value: 4.67e-110
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CPSaseII_lrg | TIGR01369 | carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ... |
1-172 | 3.00e-96 | ||||
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis] Pssm-ID: 273581 [Multi-domain] Cd Length: 1050 Bit Score: 299.99 E-value: 3.00e-96
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carB | PRK12815 | carbamoyl phosphate synthase large subunit; Reviewed |
1-172 | 1.19e-86 | ||||
carbamoyl phosphate synthase large subunit; Reviewed Pssm-ID: 237215 [Multi-domain] Cd Length: 1068 Bit Score: 274.15 E-value: 1.19e-86
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CarB | COG0458 | Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ... |
1-172 | 1.13e-74 | ||||
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis Pssm-ID: 440226 [Multi-domain] Cd Length: 536 Bit Score: 232.85 E-value: 1.13e-74
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PLN02735 | PLN02735 | carbamoyl-phosphate synthase |
1-172 | 5.81e-53 | ||||
carbamoyl-phosphate synthase Pssm-ID: 215391 [Multi-domain] Cd Length: 1102 Bit Score: 180.74 E-value: 5.81e-53
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carB | PRK05294 | carbamoyl-phosphate synthase large subunit; |
1-114 | 3.64e-29 | ||||
carbamoyl-phosphate synthase large subunit; Pssm-ID: 235393 [Multi-domain] Cd Length: 1066 Bit Score: 112.50 E-value: 3.64e-29
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CPSaseII_lrg | TIGR01369 | carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ... |
1-117 | 6.05e-27 | ||||
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis] Pssm-ID: 273581 [Multi-domain] Cd Length: 1050 Bit Score: 105.85 E-value: 6.05e-27
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carB | PRK12815 | carbamoyl phosphate synthase large subunit; Reviewed |
1-117 | 1.95e-24 | ||||
carbamoyl phosphate synthase large subunit; Reviewed Pssm-ID: 237215 [Multi-domain] Cd Length: 1068 Bit Score: 98.89 E-value: 1.95e-24
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CPSase_L_D2 | pfam02786 | Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ... |
1-50 | 6.13e-20 | ||||
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Pssm-ID: 397079 [Multi-domain] Cd Length: 209 Bit Score: 82.35 E-value: 6.13e-20
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PLN02735 | PLN02735 | carbamoyl-phosphate synthase |
1-114 | 1.01e-18 | ||||
carbamoyl-phosphate synthase Pssm-ID: 215391 [Multi-domain] Cd Length: 1102 Bit Score: 82.52 E-value: 1.01e-18
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CPSase_L_D3 | pfam02787 | Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate ... |
140-172 | 4.68e-12 | ||||
Carbamoyl-phosphate synthetase large chain, oligomerization domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. Pssm-ID: 460695 Cd Length: 79 Bit Score: 58.54 E-value: 4.68e-12
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CPSase_L_D3 | smart01096 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate ... |
138-172 | 6.41e-12 | ||||
Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. Pssm-ID: 198164 [Multi-domain] Cd Length: 124 Bit Score: 59.39 E-value: 6.41e-12
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Blast search parameters | ||||
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