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Conserved domains on  [gi|808215623|gb|AKD27715|]
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histone acetyltransferase, partial [Thermococcus sp. MZ8]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ELP3 super family cl34206
tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), ...
 1-80 1.55e-27

tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), contains radical SAM and acetyltransferase domains [Translation, ribosomal structure and biogenesis];


The actual alignment was detected with superfamily member COG1243:

Pssm-ID: 440856 [Multi-domain]  Cd Length: 432  Bit Score: 103.45  E-value: 1.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808215623   1 RHSNLGQLVFNELVKRGVRPREIRFREVGHMMEkfgvqpeVEHIKLLREDYDAAGGREIFLSFEDTKNDVLIGFIRLRIP 80
Cdd:COG1243  291 KHPNLRQLVESRLEEEGIKCRCIRCREVGHNDD-------PEDIELRREDYEASGGKEHFLSFEDKDIDILIGFLRLRFP 363
 
Name Accession Description Interval E-value
ELP3 COG1243
tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), ...
 1-80 1.55e-27

tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), contains radical SAM and acetyltransferase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440856 [Multi-domain]  Cd Length: 432  Bit Score: 103.45  E-value: 1.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808215623   1 RHSNLGQLVFNELVKRGVRPREIRFREVGHMMEkfgvqpeVEHIKLLREDYDAAGGREIFLSFEDTKNDVLIGFIRLRIP 80
Cdd:COG1243  291 KHPNLRQLVESRLEEEGIKCRCIRCREVGHNDD-------PEDIELRREDYEASGGKEHFLSFEDKDIDILIGFLRLRFP 363
 
Name Accession Description Interval E-value
ELP3 COG1243
tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), ...
 1-80 1.55e-27

tRNA U34 5-carboxymethylaminomethylation enzyme Elp3 (RNA elongator complex protein 3), contains radical SAM and acetyltransferase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440856 [Multi-domain]  Cd Length: 432  Bit Score: 103.45  E-value: 1.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808215623   1 RHSNLGQLVFNELVKRGVRPREIRFREVGHMMEkfgvqpeVEHIKLLREDYDAAGGREIFLSFEDTKNDVLIGFIRLRIP 80
Cdd:COG1243  291 KHPNLRQLVESRLEEEGIKCRCIRCREVGHNDD-------PEDIELRREDYEASGGKEHFLSFEDKDIDILIGFLRLRFP 363
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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