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Conserved domains on  [gi|806393658|gb|AKB92403|]
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CCR4-NOT transcription complex subunit 1, partial [Oligocottus snyderi]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CDC39 super family cl34904
Cell division control protein, negative regulator of transcription [Cell division and ...
1-42 7.63e-04

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


The actual alignment was detected with superfamily member COG5103:

Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 34.60  E-value: 7.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 806393658    1 QISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFS 42
Cdd:COG5103    30 QILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQ 71
 
Name Accession Description Interval E-value
CDC39 COG5103
Cell division control protein, negative regulator of transcription [Cell division and ...
1-42 7.63e-04

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 34.60  E-value: 7.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 806393658    1 QISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFS 42
Cdd:COG5103    30 QILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQ 71
CARD_CASP1-like cd08325
Caspase activation and recruitment domain found in Caspase-1 and related proteins; Caspase ...
5-29 6.27e-03

Caspase activation and recruitment domain found in Caspase-1 and related proteins; Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5), and -12 (CASP12) are inflammatory caspases implicated in inflammation and endoplasmic reticulum stress-induced apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260036  Cd Length: 83  Bit Score: 31.02  E-value: 6.27e-03
                        10        20
                ....*....|....*....|....*
gi 806393658  5 LVDNLTKKNYRASQQEIQHIVNRHG 29
Cdd:cd08325  53 LIDSVTEKGQMAGQIFIQHLCNRDK 77
 
Name Accession Description Interval E-value
CDC39 COG5103
Cell division control protein, negative regulator of transcription [Cell division and ...
1-42 7.63e-04

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 34.60  E-value: 7.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 806393658    1 QISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFS 42
Cdd:COG5103    30 QILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQ 71
CARD_CASP1-like cd08325
Caspase activation and recruitment domain found in Caspase-1 and related proteins; Caspase ...
5-29 6.27e-03

Caspase activation and recruitment domain found in Caspase-1 and related proteins; Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5), and -12 (CASP12) are inflammatory caspases implicated in inflammation and endoplasmic reticulum stress-induced apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.


Pssm-ID: 260036  Cd Length: 83  Bit Score: 31.02  E-value: 6.27e-03
                        10        20
                ....*....|....*....|....*
gi 806393658  5 LVDNLTKKNYRASQQEIQHIVNRHG 29
Cdd:cd08325  53 LIDSVTEKGQMAGQIFIQHLCNRDK 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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