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Conserved domains on  [gi|773015183|gb|AJY10873|]
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hypothetical protein AK34_4224 [Burkholderia dolosa AU0158]

Protein Classification

DUF2938 domain-containing protein( domain architecture ID 10567658)

DUF2938 domain-containing protein similar to Pseudoalteromonas sp. plasmid-borne TmlY

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF2938 pfam11158
Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. ...
11-150 1.23e-51

Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.


:

Pssm-ID: 431689  Cd Length: 150  Bit Score: 161.75  E-value: 1.23e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   11 LPVGAGATLVMDLCTLLRRRAFGTPSLDYALVGRWLGHMTRGRFRHASIAAAPRVRGERALGWLAHYAIGVAFAVLPVVI 90
Cdd:pfam11158   1 ILIGVGATLVMDLWALLLKRLFGVPALNYAMVGRWLGHLPKGRFFHDAIAASPPVPGERALGWLAHYAIGILFAAILALI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   91 AGARWLDAPTLAPALAAGLVSVVAPFFVMQPAFGFGIAASRTPRPAVARARSIVSHLSYG 150
Cdd:pfam11158  81 MGAGWLANPTLLPALVVGIVTVVAPWFLMQPALGAGIAASRTPNPWRARLLSLVAHTVFG 140
 
Name Accession Description Interval E-value
DUF2938 pfam11158
Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. ...
11-150 1.23e-51

Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.


Pssm-ID: 431689  Cd Length: 150  Bit Score: 161.75  E-value: 1.23e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   11 LPVGAGATLVMDLCTLLRRRAFGTPSLDYALVGRWLGHMTRGRFRHASIAAAPRVRGERALGWLAHYAIGVAFAVLPVVI 90
Cdd:pfam11158   1 ILIGVGATLVMDLWALLLKRLFGVPALNYAMVGRWLGHLPKGRFFHDAIAASPPVPGERALGWLAHYAIGILFAAILALI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   91 AGARWLDAPTLAPALAAGLVSVVAPFFVMQPAFGFGIAASRTPRPAVARARSIVSHLSYG 150
Cdd:pfam11158  81 MGAGWLANPTLLPALVVGIVTVVAPWFLMQPALGAGIAASRTPNPWRARLLSLVAHTVFG 140
 
Name Accession Description Interval E-value
DUF2938 pfam11158
Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. ...
11-150 1.23e-51

Protein of unknown function (DUF2938); This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.


Pssm-ID: 431689  Cd Length: 150  Bit Score: 161.75  E-value: 1.23e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   11 LPVGAGATLVMDLCTLLRRRAFGTPSLDYALVGRWLGHMTRGRFRHASIAAAPRVRGERALGWLAHYAIGVAFAVLPVVI 90
Cdd:pfam11158   1 ILIGVGATLVMDLWALLLKRLFGVPALNYAMVGRWLGHLPKGRFFHDAIAASPPVPGERALGWLAHYAIGILFAAILALI 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 773015183   91 AGARWLDAPTLAPALAAGLVSVVAPFFVMQPAFGFGIAASRTPRPAVARARSIVSHLSYG 150
Cdd:pfam11158  81 MGAGWLANPTLLPALVVGIVTVVAPWFLMQPALGAGIAASRTPNPWRARLLSLVAHTVFG 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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