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Conserved domains on  [gi|772989524|gb|AJX97888|]
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type IV pilus secretin PilQ family protein [Burkholderia thailandensis 2002721643]

Protein Classification

type IV pilus secretin PilQ( domain architecture ID 11469174)

type IV pilus secretin PilQ is required for type IV pilus biogenesis and competence, and could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 179-573 4.04e-172

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 499.77  E-value: 4.04e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 179 ISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERR 258
Cdd:COG4796  163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 259 RFDAHARAAQLEPLASRSFVLRYARAADVQRLLSGSAaQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPS 338
Cdd:COG4796  243 ELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQR-GSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 339 RQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFD--------AATAGLTLFAARAS 410
Cdd:COG4796  322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNvnlpaanpAGSLGLTLAKLGGG 401

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 411 RLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDV 490
Cdd:COG4796  402 RLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDV 481

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 491 AKDSVGEETASG-PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYIT 569
Cdd:COG4796  482 SKDSPGETVAGGvPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFIT 561


                 ....
gi 772989524 570 PTVV 573
Cdd:COG4796  562 PRIV 565
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
23-147 7.97e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 7.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  23 SPPPLPAGVPAGWAVSASVGAVGRAPLPDAAASrwridserdAVAEAPTPDAGGGAPADEFAGDAAPESTSAANSVEPSG 102
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEAL---------AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 772989524 103 SAPAATGLPSRAASVQAEDAALDAVL---EGPPVPLSPEQRMSDEHPA 147
Cdd:PRK12323 472 VAAAAAAAPARAAPAAAPAPADDDPPpweELPPEFASPAPAQPDAAPA 519
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 179-573 4.04e-172

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 499.77  E-value: 4.04e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 179 ISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERR 258
Cdd:COG4796  163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 259 RFDAHARAAQLEPLASRSFVLRYARAADVQRLLSGSAaQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPS 338
Cdd:COG4796  243 ELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQR-GSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 339 RQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFD--------AATAGLTLFAARAS 410
Cdd:COG4796  322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNvnlpaanpAGSLGLTLAKLGGG 401

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 411 RLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDV 490
Cdd:COG4796  402 RLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDV 481

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 491 AKDSVGEETASG-PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYIT 569
Cdd:COG4796  482 SKDSPGETVAGGvPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFIT 561


                 ....
gi 772989524 570 PTVV 573
Cdd:COG4796  562 PRIV 565
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 176-573 5.96e-152

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 442.52  E-value: 5.96e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  176 NRAISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAER 255
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  256 ERRRFDAHARAAQLEPLASRSFVLRYARAADVQRLLSGSAAQR--ILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGK 333
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGGSggLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  334 LDTPSRQVLIEARIVEGDRGFSRNLGARLALRAP-DAGDRAAGVVAGRNGTLADLTARPISGFDAATAGLTLFAARA--- 409
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKnGNGNGTAGGIGGNNGTTATGAGGTGNPPFGDNLNVNLATATTaag 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  410 ----------SRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQIT 479
Cdd:TIGR02515 241 isfalgkigsGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVLSLEVTPQIT 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  480 PDGRVILDLDVAKDSVGEETA---SGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRA 556
Cdd:TIGR02515 321 PDGRIIMDLLVSKDSPGVVAQaggGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTG 400

                         410
                  ....*....|....*..
gi 772989524  557 QRAQRSELVVYITPTVV 573
Cdd:TIGR02515 401 KSDEKSELLIFITPRIV 417
hofQ PRK13568
DNA uptake porin HofQ;
191-573 2.48e-88

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 278.15  E-value: 2.48e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 191 VFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRFDAHARAAQLE 270
Cdd:PRK13568   1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 271 PLASRSFVLRYARAADVQRLLSgSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEG 350
Cdd:PRK13568  81 PLANLTLTLQYADAEEVADSLQ-SQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 351 DRGFSRNLGARLALrapDAGDRAAGVVAGRNGTLADLTARPisgfdAATAGLTLfAARASRLLDIELSALEAQGRGQIVS 430
Cdd:PRK13568 160 SSESLQELGVRWGM---GEGKQGNTALRINDFNVNLPLPNP-----AASAGFHL-ARLGGRLLDLELSALEQENQVDIIA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 431 SPRVVTADRTKAVVEQGAELPYQAKVGN-GVSGVQFRRATLKLEVEPQITPDGRVILDLDVAKDSVGEETASGP----AI 505
Cdd:PRK13568 231 SPRLFTSHQQTASIKQGTEIPYTVSSGKsGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRGEgemlAI 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 772989524 506 HTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:PRK13568 311 DKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
Secretin pfam00263
Bacterial type II and III secretion system protein;
419-573 6.82e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 172.32  E-value: 6.82e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  419 ALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSG---VQFRRATLKLEVEPQITPDGRVILDLDVAKDSV 495
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTtttVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 772989524  496 GEETASG-PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:pfam00263  81 DGNGGNGvPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
23-147 7.97e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 7.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  23 SPPPLPAGVPAGWAVSASVGAVGRAPLPDAAASrwridserdAVAEAPTPDAGGGAPADEFAGDAAPESTSAANSVEPSG 102
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEAL---------AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 772989524 103 SAPAATGLPSRAASVQAEDAALDAVL---EGPPVPLSPEQRMSDEHPA 147
Cdd:PRK12323 472 VAAAAAAAPARAAPAAAPAPADDDPPpweELPPEFASPAPAQPDAAPA 519
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 201-248 5.21e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 35.17  E-value: 5.21e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 772989524   201 LNIVVSER-VRG-TVSLRLNNVRWRSAFDALLDAHGLAMARR-GSVIWVAP 248
Cdd:smart00965   1 LNFVYDPAlVAGrRVSLLLGNVTVEQALDRLLAGTGLTYRRIgGNTIVLSP 51
 
Name Accession Description Interval E-value
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 179-573 4.04e-172

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 499.77  E-value: 4.04e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 179 ISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERR 258
Cdd:COG4796  163 LSLNFQDIPVRSVLQLIADFTGLNLVISDSVTGNITLRLKNVPWDQALDIILKAKGLDKRKNGNVLLVAPAEELAAREKL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 259 RFDAHARAAQLEPLASRSFVLRYARAADVQRLLSGSAaQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPS 338
Cdd:COG4796  243 ELEAKQQIEELEPLRTEYIQLNYAKASDLAKLLKGQR-GSLLSERGSVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPV 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 339 RQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFD--------AATAGLTLFAARAS 410
Cdd:COG4796  322 RQVLIEARIVEASDSFSRELGVRWGGSGANGTGNNRGGIGGSLNGTTAGTPLLPDGLNvnlpaanpAGSLGLTLAKLGGG 401

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 411 RLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDV 490
Cdd:COG4796  402 RLLDLELSALEAEGKGEIISSPRVITADQQEASIEQGTEIPYQESSSSGATSVEFKEAVLSLEVTPQITPDGRIILDLDV 481

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 491 AKDSVGEETASG-PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYIT 569
Cdd:COG4796  482 SKDSPGETVAGGvPAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFIT 561


                 ....
gi 772989524 570 PTVV 573
Cdd:COG4796  562 PRIV 565
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 176-573 5.96e-152

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 442.52  E-value: 5.96e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  176 NRAISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAER 255
Cdd:TIGR02515   1 GEKISLNFQDIPVRTVLQVIAEFTGLNIVVSDSVQGNITLRLKNVPWDQALDIVLKSKGLDKRRDGNIIYIAPLDELAAQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  256 ERRRFDAHARAAQLEPLASRSFVLRYARAADVQRLLSGSAAQR--ILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGK 333
Cdd:TIGR02515  81 EKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGVTGGSggLLSPRGSVTVDPRTNTLIVTDTPENLARIRKLIAE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  334 LDTPSRQVLIEARIVEGDRGFSRNLGARLALRAP-DAGDRAAGVVAGRNGTLADLTARPISGFDAATAGLTLFAARA--- 409
Cdd:TIGR02515 161 LDIPVRQVLIEARIVEATDSFSRELGVRWGITDKnGNGNGTAGGIGGNNGTTATGAGGTGNPPFGDNLNVNLATATTaag 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  410 ----------SRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQIT 479
Cdd:TIGR02515 241 isfalgkigsGRLLDLELSALESEGKGEIISSPRVLTANNKEAKIEQGTEIPYQQTSSSGATSVEFKEAVLSLEVTPQIT 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  480 PDGRVILDLDVAKDSVGEETA---SGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRA 556
Cdd:TIGR02515 321 PDGRIIMDLLVSKDSPGVVAQaggGVPAIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTG 400

                         410
                  ....*....|....*..
gi 772989524  557 QRAQRSELVVYITPTVV 573
Cdd:TIGR02515 401 KSDEKSELLIFITPRIV 417
hofQ PRK13568
DNA uptake porin HofQ;
191-573 2.48e-88

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 278.15  E-value: 2.48e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 191 VFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRFDAHARAAQLE 270
Cdd:PRK13568   1 VLQALADYQQLNLVTAPGVGGNLSLRLIEVPWEQALAIILRMGKLSAEREGNVLMVFPEQEIQERQQKTKQQAAPQEQML 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 271 PLASRSFVLRYARAADVQRLLSgSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEG 350
Cdd:PRK13568  81 PLANLTLTLQYADAEEVADSLQ-SQRGGLLSPRGSVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 351 DRGFSRNLGARLALrapDAGDRAAGVVAGRNGTLADLTARPisgfdAATAGLTLfAARASRLLDIELSALEAQGRGQIVS 430
Cdd:PRK13568 160 SSESLQELGVRWGM---GEGKQGNTALRINDFNVNLPLPNP-----AASAGFHL-ARLGGRLLDLELSALEQENQVDIIA 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 431 SPRVVTADRTKAVVEQGAELPYQAKVGN-GVSGVQFRRATLKLEVEPQITPDGRVILDLDVAKDSVGEETASGP----AI 505
Cdd:PRK13568 231 SPRLFTSHQQTASIKQGTEIPYTVSSGKsGSTSIEFKEAVLGMEVTPKILRNGRITLKLKISQNMPGRTIKRGEgemlAI 310

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 772989524 506 HTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:PRK13568 311 DKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLI 378
hofQ PRK10560
outer membrane porin HofQ; Provisional
 185-573 2.70e-70

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 231.24  E-value: 2.70e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 185 QASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRFDAHA 264
Cdd:PRK10560   4 DVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQAWQNENIARQEAEQA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 265 RAAQLEPLASRSFVLRYARAADVQRllsgsAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIE 344
Cdd:PRK10560  84 RAQANLPLENRSITLQYADAGELAK-----AGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELA 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 345 ARIVEGDRGFSRNLGARLALrAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAGltlfaaraSRLLDIELSALEAQG 424
Cdd:PRK10560 159 AHIVTINEKSLRELGVKWTL-ADAQQAGGVGQVTTLGSDLSVATATTRVGFNIGRIN--------GRLLDLELSALEQKQ 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 425 RGQIVSSPRVVTADRTKAVVEQGAELPYQAKVG-NGVSGVQFRRATLKLEVEPQITPDGRVILDLDVAKDSVGE--ETAS 501
Cdd:PRK10560 230 QLDIIASPRLLASHLQPASIKQGSEIPYQVSSGeSGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQvlQQAD 309

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 772989524 502 GP--AIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:PRK10560 310 GEvlAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 383
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 281-573 3.15e-68

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 224.03  E-value: 3.15e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 281 YARAADVQRLLSGSAAQrilSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGA 360
Cdd:COG1450   24 YADAEDLAKVLRSLLGG---AAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGI 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 361 RLALRAPDAGdraaGVVAGRNGTLADLTA--RPISGFDAATAGLTLFAARasrlldieLSALEAQGRGQIVSSPRVVTAD 438
Cdd:COG1450  101 DWSALGGNGG----GVNFGGTGSLGSLAAagSLGGGLNLGLLGGGNFGAL--------LNALESNGDANVLSSPSILTLN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 439 RTKAVVEQGAELPYQAKV------GNGVSGVQFRRATLKLEVEPQITPDGRVILDLDVAKDSVGEETASG----PAIHTK 508
Cdd:COG1450  169 NQEAVIKVGQTVPYVTGStttsstGNPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVTGSTTGGgnglPTINKR 248

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 772989524 509 HVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:COG1450  249 EISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTII 313
IV PHA00019
phage assembly protein
 178-573 2.33e-56

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 195.42  E-value: 2.33e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 178 AISLNLQQASLAAVFDAFARFTGLNIVVSERVRGTVSLR---LNNVRWRSAFDALLDAHGLAMARRGS--VIWVAPVAEL 252
Cdd:PHA00019  23 ALPVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYsadVNPANLPQFFDSVLRANGFDLVAGGPavVIKQNPNQED 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 253 AERERRRF------DAHARAAQLE---PLASRSFVLRYARAADVQRLLSgSAAQRILSKRGSVLADPRTNLLFVTDLSGR 323
Cdd:PHA00019 103 YADDLRDSrddvfyDNSVPSGAPEvpnDLIVRTFNINNVRASDLLPLVK-IFVKSNGAPGGSVTDLPGTNSLVVSGSASQ 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 324 LAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARlalrapdAGDRAAGVVAGRNGTladltARPISGFDAATAGLT 403
Cdd:PHA00019 182 LPALADFISAIDVPRRQVLIEALIFETSLGDGVDLSFA-------AGLASGGKVAGGFNT-----ARLTTVLSSAGGSFG 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 404 LFAaraSRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPY--------QAKVGNGVSGVQFRRATLKLEVE 475
Cdd:PHA00019 250 IFN---GNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQNVPFvtgrvtgeAANVNNPFQTIERKDVGVSLEVT 326

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 476 PQITPDGRVILDLDVAKDSVGEET-ASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRH 554
Cdd:PHA00019 327 PVVMGDGQLVLDIDTKADSLSDSTiASDIITNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRS 406

                        410
                 ....*....|....*....
gi 772989524 555 RAQRAQRSELVVYITPTVV 573
Cdd:PHA00019 407 KSDSNEQRTLYVLLTARVI 425
Secretin pfam00263
Bacterial type II and III secretion system protein;
419-573 6.82e-51

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 172.32  E-value: 6.82e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  419 ALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSG---VQFRRATLKLEVEPQITPDGRVILDLDVAKDSV 495
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTtttVEFKDAGLSLKVTPQVTPDGTITLKINPEVSSP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 772989524  496 GEETASG-PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:pfam00263  81 DGNGGNGvPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFITPRIV 159
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 292-576 9.09e-41

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 156.01  E-value: 9.09e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  292 SGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALR---APD 368
Cdd:TIGR02517 283 SAQAASSASGGSVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAgtgGGV 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  369 AGDRAAGVVAGRNGTLADLTARPISGFDAATAGLTLFAARASRLLDIE----LSALEAQGRGQIVSSPRVVTADRTKAVV 444
Cdd:TIGR02517 363 NFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNlgvlLNALKQDTGFNVLSTPSLLTLDNQEAEI 442

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  445 EQGAELPY----QAKVGNGVSG-----VQFRRATLKLEVEPQITPDGRVILDLDVAKDSVGEET----ASGPAIHTKHVQ 511
Cdd:TIGR02517 443 NVGQEVPVltgsYNTGTGGTNAnpfntYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTvgsaASGPTFNKREIK 522

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 772989524  512 TRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVVIGP 576
Cdd:TIGR02517 523 TVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDP 587
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 184-573 3.93e-38

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 146.37  E-value: 3.93e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  184 QQASLAAVFDAFARFTGLNIVVSERVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAE----------LA 253
Cdd:TIGR02516   7 KQESLRALLADFAANYGIPVVVSSKVNKKVTGKFEDDNPEKFLQRLALLYGLTWYYDGNALYIYPNSEiaravisprpLS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  254 ERERRRF---------------DAHAR-----------------AAQLEPLASRS---------FVLRYARAAD------ 286
Cdd:TIGR02516  87 ANELKKAlrrsglydprfpwrgDPEEGtvyvsgppayidlvrnaATALEKQDQGRagnrqvvkvFPLKYASASDrtynyr 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  287 ------------VQRLLSGS---AAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGD 351
Cdd:TIGR02516 167 dqkvtipgvatiLRRLLSGGrqgAGGGRASASPKISADPRTNAVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDID 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  352 RGFSRNLGA--RLALRApdaGDRAAGVVAGrngtladltarpisgfDAATAGLTLFA--ARASRLLDIELSALEAQGRGQ 427
Cdd:TIGR02516 247 ASDLSQLGVdwQATLGA---GDRQTGFNVS----------------AGAGLGATGSSivTSDGDYFMARVNALEQTGKAK 307

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  428 IVSSPRVVTADRTKAVVEQGAElpYQAKV-GNGVSGVQFRRATLKLEVEPQITPDG----RVILDLDVAKDSVGEETASG 502
Cdd:TIGR02516 308 IVSRPSVLTLENVQAVLDNNRT--FYVKVsGERVADLESVTAGTSLRVTPRVIGDEgaqrQIKLNVDIEDGQQKTDGTST 385

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 772989524  503 ----PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573
Cdd:TIGR02516 386 vdalPEIKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIV 460
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 338-573 1.07e-31

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 127.68  E-value: 1.07e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 338 SRQVLIEARIVEGDRGFSRNLGARLALRApDAGDRAAGVVAGRN--GTLADLTARPISGFDAATAGLTLFaarasrlldi 415
Cdd:COG4964  174 PQQVMLKVRVAEVSRSVLKQLGINWSGLG-SSGGFSFGLLTGGLlsGLLGGATAGAFSGFGFGNASISAT---------- 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 416 eLSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQAKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDLDV---AK 492
Cdd:COG4964  243 -LDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPVAQGDGTITVEYKEFGVSLNFTPTVLSNGRISLKVAPevsEL 321

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 493 DSVGEETASG---PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYIT 569
Cdd:COG4964  322 DPSNAVTLNGitiPGLTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVT 401


                 ....
gi 772989524 570 PTVV 573
Cdd:COG4964  402 PYLV 405
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
308-553 1.57e-13

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 73.19  E-value: 1.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 308 ADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGArlalrapdagDRAAGVVAGR-----NG 382
Cdd:PRK15346 240 ADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGI----------DWSASASLGGgkisfNS 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 383 TLADLTArpiSGFDAATAGLTLFAARasrlldieLSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELpYQAKVGNGVSG 462
Cdd:PRK15346 310 GFADGNA---SGFSTVISNTGNFMVR--------LNALEKNSKAKILSQPSVVTLNNIQAVLDKNVTF-YTKLQGEKVAK 377

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 463 VQFRRATLKLEVEPQITPDG---RVILDLDVAKDSVGE---ETASGPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDV 536
Cdd:PRK15346 378 LESITTGSLLRVTPRLIDDNgtqKVMLNLNIQDGQQSAtqsETDPLPEVQNSEIATQATLKAGQSLLLGGFIQDKQIESQ 457

                        250
                 ....*....|....*..
gi 772989524 537 TRVPLLGKIPVLGALFR 553
Cdd:PRK15346 458 NKIPLLGDIPLIGGLFR 474
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
291-570 2.75e-11

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 66.33  E-value: 2.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 291 LSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGArlalrapdag 370
Cdd:PRK15339 253 LQEALKQNAAAGDIKIIAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGV---------- 322

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 371 DRAAGVVAGRNGTlADLTARPISGFDAataglTLFAArasrlldiELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAEL 450
Cdd:PRK15339 323 NWSGSITIGDKLG-VSLNQSSISTLDG-----SRFIA--------AVMALEQKKKANVVSRPVVLTQENIPAIFDNNRTF 388

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524 451 pYQAKVGNgvSGVQFRRATLK--LEVEPQITPDGRVILDLDV-------AKDSVGEETASGPAIHTKHVQTRVEVENGGT 521
Cdd:PRK15339 389 -YTKLVGE--RNVALEHVTYGtmISVLPRFSADGQIEMSLDIedgnektPQSDTTTSVDALPEVGRTLISTIARVPQGKS 465

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 772989524 522 VSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITP 570
Cdd:PRK15339 466 LLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNIVRVFLIEP 514
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 274-340 4.43e-11

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 58.77  E-value: 4.43e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 772989524  274 SRSFVLRYARAADVQRLLSG-SAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQ 340
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSlLGGSGLLSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
23-147 7.97e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 7.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  23 SPPPLPAGVPAGWAVSASVGAVGRAPLPDAAASrwridserdAVAEAPTPDAGGGAPADEFAGDAAPESTSAANSVEPSG 102
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEAL---------AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 772989524 103 SAPAATGLPSRAASVQAEDAALDAVL---EGPPVPLSPEQRMSDEHPA 147
Cdd:PRK12323 472 VAAAAAAAPARAAPAAAPAPADDDPPpweELPPEFASPAPAQPDAAPA 519
STN pfam07660
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 202-248 3.20e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 429580 [Multi-domain]  Cd Length: 51  Bit Score: 35.95  E-value: 3.20e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 772989524  202 NIVVSER-VRG--TVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAP 248
Cdd:pfam07660   1 SILYDSDlVDGkqSVSLNVGNVTLEEALDQLLAGTGLSYEIGGNTIVLRP 50
STN smart00965
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ...
 201-248 5.21e-03

Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.


Pssm-ID: 198033 [Multi-domain]  Cd Length: 52  Bit Score: 35.17  E-value: 5.21e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 772989524   201 LNIVVSER-VRG-TVSLRLNNVRWRSAFDALLDAHGLAMARR-GSVIWVAP 248
Cdd:smart00965   1 LNFVYDPAlVAGrRVSLLLGNVTVEQALDRLLAGTGLTYRRIgGNTIVLSP 51
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
25-149 8.94e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 8.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  25 PPLPAGVPAGWAVSASVGAVGRAPLPDAAASRWRIDSERDAVAEAPtpdAGGGAPADEFAGDAAPESTSAANSVEPSGSA 104
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAP---PATADRGDDAADGDAPVPAKANARASADSRC 463

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 772989524 105 PAATGLPSRAASVQAEdAALDAvleGPPVPLSPEQRMSDEHPALP 149
Cdd:PRK07003 464 DERDAQPPADSGSASA-PASDA---PPDAAFEPAPRAAAPSAATP 504
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
24-150 9.25e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 9.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 772989524  24 PPPLPAG-VPAGWAVSASVGAV----GRAPLPDAAASRWRIDSERDAVAEAPTPDAGGGAPADefAGDAAPESTSAANSV 98
Cdd:PRK07003 372 VPARVAGaVPAPGARAAAAVGAsavpAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPA--TADRGDDAADGDAPV 449

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 772989524  99 EPSGSAPAATglPSRAASVQAEDAALDAVLEGPPVPLSPEQRMSDEHPALPS 150
Cdd:PRK07003 450 PAKANARASA--DSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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