|
Name |
Accession |
Description |
Interval |
E-value |
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
493-1010 |
0e+00 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 826.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 493 FDAPLTDASGRPMSRAMQVAKKRLDLPTLPGFELLDKVdPNKKVNFTEEQLSRLSELLEIKLQEFNVKAQVVEAQPGPVV 572
Cdd:COG1674 109 GLLALAAAALGALALLLLAAAEALALAVLPPLDLLDPP-PPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVV 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 573 TRFELDLAPGVKASKVTNISRDLARSMSMASVRVVEVIPGKPYIGIEVPNSAREMVRLIELLETPAYRDPSALISMAMGK 652
Cdd:COG1674 188 TRYEIEPAPGVKVSKITNLADDIALALAAKSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 653 DISGNPVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHLLTPVVTDMKDAV 732
Cdd:COG1674 268 DISGEPVVADLAKMPHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAA 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 733 SALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDlidptwkpsdsatqerAPRLTPLPSIVIVADEFADMIMQ 812
Cdd:COG1674 348 NALKWAVREMERRYKLFAKAGVRNIAGYNEKVREAKAKGEE----------------EEGLEPLPYIVVIIDELADLMMV 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 813 VGKKAEEMITRLAQKSRAAGIHLLLATQRPSVDVITGLIKANIPTRVALRVNSKIDSRTILDAGGAEDLLGHGDMLFLGP 892
Cdd:COG1674 412 AGKEVEEAIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPP 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 893 GKIEPERVHGAFISDDEVNRICDAWRERGEPDYVDEILTPFDEEpasrgfEEGDGASDRDALYDQCVSFVLETRKASTSS 972
Cdd:COG1674 492 GASKPIRVQGAFVSDEEVERVVDFLKSQGEPEYIEEILEEEEEE------DEGGDDDEDDELFDEAVELVVETQKASTSL 565
|
490 500 510
....*....|....*....|....*....|....*...
gi 742929088 973 LQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDILV 1010
Cdd:COG1674 566 LQRRLRIGYNRAARLIDQMEERGIVGPAEGSKPREVLV 603
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
252-1009 |
0e+00 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 668.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 252 ADVLAKEQSQPETIEEKPAPQPENFERTLEQAQQLKKDSErlvatgevwralQRDDASHKQEIDallraaDDSNEHPSHE 331
Cdd:PRK10263 640 AQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQ------------YQHDVPVNAEDA------DAAAEAELAR 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 332 QFQETAYQAKQA-QPQASNIHQgldwNDDEIFDELLAAVPNSKTATdVHTPFVQ-DHHVESAVAPQTSHPSVETSAPVSN 409
Cdd:PRK10263 702 QFAQTQQQRYSGeQPAGANPFS----LDDFEFSPMKALLDDGPHEP-LFTPIVEpVQQPQQPVAPQQQYQQPQQPVAPQP 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 410 LNQSPKnlsnEQVFDDFDDLLIDEDIAPAPQSVKASSYAQSSAFVKAPIQTTIgaeklSKEEFIEAWQETAGKPEDNFED 489
Cdd:PRK10263 777 QYQQPQ----QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA-----PQPQYQQPQQPVAPQPQDTLLH 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 490 efdfdaPLTDASG--RPMSRAmQVAKKRLDLPTLPGFELlDKVDpnkkvNFTEEQLSRLselLEIKLQEFNVKAQVVEAQ 567
Cdd:PRK10263 848 ------PLLMRNGdsRPLHKP-TTPLPSLDLLTPPPSEV-EPVD-----TFALEQMARL---VEARLADFRIKADVVNYS 911
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 568 PGPVVTRFELDLAPGVKASKVTNISRDLARSMSMASVRVVEVIPGKPYIGIEVPNSAREMVRLIELLETPAYRDPSALIS 647
Cdd:PRK10263 912 PGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLT 991
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 648 MAMGKDISGNPVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHLLTPVVTD 727
Cdd:PRK10263 992 VVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTD 1071
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 728 MKDAVSALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDLIDPTWKPSDSATQERaPRLTPLPSIVIVADEFA 807
Cdd:PRK10263 1072 MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQH-PVLKKEPYIVVLVDEFA 1150
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 808 DMIMQVGKKAEEMITRLAQKSRAAGIHLLLATQRPSVDVITGLIKANIPTRVALRVNSKIDSRTILDAGGAEDLLGHGDM 887
Cdd:PRK10263 1151 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDM 1230
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 888 LFLGPGKIEPERVHGAFISDDEVNRICDAWRERGEPDYVDEILTPFDEEPASRGFeegDGASDRDALYDQCVSFVLETRK 967
Cdd:PRK10263 1231 LYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGF---DGAEELDPLFDQAVQFVTEKRK 1307
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 742929088 968 ASTSSLQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDIL 1009
Cdd:PRK10263 1308 ASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVL 1349
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
630-843 |
1.55e-73 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 241.90 E-value: 1.55e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 630 LIELLETPAYRDPSALISMAMGKDISGNPVLTDLAKAP-HMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQ 708
Cdd:pfam01580 1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 709 LELANYNDIPHLLT-PVVTDMKDAVSALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDLIDPTWKPSDSATq 787
Cdd:pfam01580 81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGFGDVFLVIYGVHVMC- 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 788 ERAPRLTPLPSIVIVADEFADMIMQVGKK----AEEMITRLAQKSRAAGIHLLLATQRPS 843
Cdd:pfam01580 160 TAGRWLEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK_4TM |
pfam13491 |
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ... |
16-169 |
2.11e-37 |
|
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.
Pssm-ID: 463896 Cd Length: 171 Bit Score: 138.10 E-value: 2.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 16 LFLVSFGIYMFLATVTYTPFDPGWMHISSDTQQVSNASGIAGAWIADLLFGFLGWASLLIPIFLFveaiqVWWPHSFLNR 95
Cdd:pfam13491 10 LALLLLGLFLLLALVSYSPADPSWSTSGSGAAPVHNWGGRFGAWLADLLLQLFGYSAWLLPVALL-----YWGWRLFRRR 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 742929088 96 PFRYAAQFF-----LILVVSSLLYLHWNVPADTLDNAAGGIIGYELGQSLSQLLTIYGATLFLLVFGVVLFTLAFGVQW 169
Cdd:pfam13491 85 SLERRWLRLlgfllLLLASSALFALRLPSLEFGLPGGAGGVIGRLLANALVTLLGFTGATLLLLALLAIGLSLVTGFSW 163
|
|
| Ftsk_gamma |
smart00843 |
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ... |
949-1010 |
5.74e-30 |
|
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 197911 [Multi-domain] Cd Length: 63 Bit Score: 112.89 E-value: 5.74e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 742929088 949 SDRDALYDQCVSFVLETRKASTSSLQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDILV 1010
Cdd:smart00843 1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLV 62
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
640-908 |
2.00e-27 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 119.31 E-value: 2.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 640 RDPSALISMAMGKDISGNPVLTDLAKA------PHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQ----L 709
Cdd:TIGR03924 403 RPGRDRLRVPIGVGDDGEPVELDLKESaeggmgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKGgatfL 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 710 ELAnynDIPH---LLT------PVVTDMKDAVSAlnwcvnEMERRYKLMSFL-KIRKLSDYNRkveeAIANGEDlidptw 779
Cdd:TIGR03924 483 GLE---GLPHvsaVITnladeaPLVDRMQDALAG------EMNRRQELLRAAgNFANVAEYEK----ARAAGAD------ 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 780 kpsdsatqeraprLTPLPSIVIVADEFADMIMQVGKKAE--EMITRLAqksRAAGIHLLLATQRPSVDVITGLiKANIPT 857
Cdd:TIGR03924 544 -------------LPPLPALFVVVDEFSELLSQHPDFADlfVAIGRLG---RSLGVHLLLASQRLDEGRLRGL-ESHLSY 606
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 742929088 858 RVALRVNSKIDSRTILDAGGAEDL---LGHGdmlFLGPGKIEPERVHGAFISDD 908
Cdd:TIGR03924 607 RIGLKTFSASESRAVLGVPDAYHLpstPGAG---YLKVDTAEPVRFRAAYVSGP 657
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1-586 |
4.53e-13 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 73.97 E-value: 4.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 1 MTAVSSvyAQRLLMTLFLVS--FGIYMFLATVTYTPFDPGWMHiSSDTQQVSNASGIAGAWIADLLFGFLGWASLLIPIf 78
Cdd:PRK10263 13 LTKLSS--GRRLLEALLILIvlFAVWLMAALLSFNPSDPSWSQ-TAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 79 LFVEAIQVWWPHSFLNRPFRYAAQFFLILVVSSLLYLHWNVPADTLDN----AAGGIIGYELGQSLSQLLTIYGATLFLL 154
Cdd:PRK10263 89 IIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDiwyfASGGVIGSLLSTTLQPLLHSSGGTIALL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 155 VF---GVVLFTlafgvQWSktWVTL-KAMPSYLQDLFykNVSPNESAYDLTtqpanktaTIKVAEMPNADVTDEAELNVQ 230
Cdd:PRK10263 169 CVwaaGLTLFT-----GWS--WVTIaEKLGGWILNIL--TFASNRTRRDDT--------WVDEDEYEDDEEYEDENHGKQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 231 PEKTQA---KASSTRHDEMAERlFADVLAKeQSQPETIEEKPAPQPENFERTleqAQQLKKDSERLVATGEvwRALQRDd 307
Cdd:PRK10263 232 HESRRArilRGALARRKRLAEK-FINPMGR-QTDAALFSGKRMDDDEEITYT---ARGVAADPDDVLFSGN--RATQPE- 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 308 ashKQEIDALLraaddsNEHPSHEQFQETAYQAKQAQPQASNIhqgldwnddeifDELLAAVPNSKTATDVHTPFVQdhh 387
Cdd:PRK10263 304 ---YDEYDPLL------NGAPITEPVAVAAAATTATQSWAAPV------------EPVTQTPPVASVDVPPAQPTVA--- 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 388 VESAVAPQTSHPSV----ETSAPVSNLNQ--SPKNLSNEQVFDDFDDLLIDEDIAPAPQSVKASSYAQSSAFVKAPIQTT 461
Cdd:PRK10263 360 WQPVPGPQTGEPVIapapEGYPQQSQYAQpaVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPE 439
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 462 igaEKLSKEEFIEAWQETAGKPEDNFEDEFDFDAPLTDAsgrPMSRAMQVAKKRLDLPTLPGFElldKVDPNKKVNF--- 538
Cdd:PRK10263 440 ---QPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE---PLYQQPQPVEQQPVVEPEPVVE---ETKPARPPLYyfe 510
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 742929088 539 -TEEQLSRLSELLEIKLQEfnVKAQVVEAQP-GPVVTRFELDLAPGVKAS 586
Cdd:PRK10263 511 eVEEKRAREREQLAAWYQP--IPEPVKEPEPiKSSLKAPSVAAVPPVEAA 558
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-863 |
2.80e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 50.68 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 668 HMLVAGTTGSGKSVAVNSMILSMLLKYTpdqlRLILIDPKqlelanyNDIPhLLTPVVTDMKDAVSAL--NWcvnemerr 745
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGG----SVIITDPK-------GELF-LVIPDRDDSFAALRALffNQ-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 746 ykLMSFLKIRklsdynrkveeaiangedlidptwkpSDSATQERAPRltplpsIVIVADEFADMImqvgkkAEEMITRLA 825
Cdd:cd01127 61 --LFRALTEL--------------------------ASLSPGRLPRR------VWFILDEFANLG------RIPNLPNLL 100
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 742929088 826 QKSRAAGIHLLLATQ------RPSVDVITGLIKANIPTRVALRV 863
Cdd:cd01127 101 ATGRKRGISVVLILQslaqleAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| ECF-S |
COG4720 |
ECF-type riboflavin transporter, membrane (S) component [Coenzyme transport and metabolism]; |
53-148 |
1.40e-03 |
|
ECF-type riboflavin transporter, membrane (S) component [Coenzyme transport and metabolism];
Pssm-ID: 443755 [Multi-domain] Cd Length: 170 Bit Score: 40.60 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 53 SGIAGAWIADLLFGFLGWAslliPIFLFVEAIQVW----WPHSFLNRPFRYAAQFFLI---------LVVSSLLYLHWN- 118
Cdd:COG4720 58 AGGIGSALADLLSGYPIWA----PWTFIIKGLEGLivglIAKKLKKKSFKKIILANILgglvmvigyYLAAPILYGGFAa 133
|
90 100 110
....*....|....*....|....*....|....
gi 742929088 119 ----VPADTLDNAAGGIIGYELGQSLSQLLTIYG 148
Cdd:COG4720 134 alqsIPGNLLQAVVGAIIALILLKALKKIRKKKG 167
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
493-1010 |
0e+00 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 826.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 493 FDAPLTDASGRPMSRAMQVAKKRLDLPTLPGFELLDKVdPNKKVNFTEEQLSRLSELLEIKLQEFNVKAQVVEAQPGPVV 572
Cdd:COG1674 109 GLLALAAAALGALALLLLAAAEALALAVLPPLDLLDPP-PPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVV 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 573 TRFELDLAPGVKASKVTNISRDLARSMSMASVRVVEVIPGKPYIGIEVPNSAREMVRLIELLETPAYRDPSALISMAMGK 652
Cdd:COG1674 188 TRYEIEPAPGVKVSKITNLADDIALALAAKSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 653 DISGNPVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHLLTPVVTDMKDAV 732
Cdd:COG1674 268 DISGEPVVADLAKMPHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAA 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 733 SALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDlidptwkpsdsatqerAPRLTPLPSIVIVADEFADMIMQ 812
Cdd:COG1674 348 NALKWAVREMERRYKLFAKAGVRNIAGYNEKVREAKAKGEE----------------EEGLEPLPYIVVIIDELADLMMV 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 813 VGKKAEEMITRLAQKSRAAGIHLLLATQRPSVDVITGLIKANIPTRVALRVNSKIDSRTILDAGGAEDLLGHGDMLFLGP 892
Cdd:COG1674 412 AGKEVEEAIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPP 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 893 GKIEPERVHGAFISDDEVNRICDAWRERGEPDYVDEILTPFDEEpasrgfEEGDGASDRDALYDQCVSFVLETRKASTSS 972
Cdd:COG1674 492 GASKPIRVQGAFVSDEEVERVVDFLKSQGEPEYIEEILEEEEEE------DEGGDDDEDDELFDEAVELVVETQKASTSL 565
|
490 500 510
....*....|....*....|....*....|....*...
gi 742929088 973 LQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDILV 1010
Cdd:COG1674 566 LQRRLRIGYNRAARLIDQMEERGIVGPAEGSKPREVLV 603
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
252-1009 |
0e+00 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 668.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 252 ADVLAKEQSQPETIEEKPAPQPENFERTLEQAQQLKKDSErlvatgevwralQRDDASHKQEIDallraaDDSNEHPSHE 331
Cdd:PRK10263 640 AQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQ------------YQHDVPVNAEDA------DAAAEAELAR 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 332 QFQETAYQAKQA-QPQASNIHQgldwNDDEIFDELLAAVPNSKTATdVHTPFVQ-DHHVESAVAPQTSHPSVETSAPVSN 409
Cdd:PRK10263 702 QFAQTQQQRYSGeQPAGANPFS----LDDFEFSPMKALLDDGPHEP-LFTPIVEpVQQPQQPVAPQQQYQQPQQPVAPQP 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 410 LNQSPKnlsnEQVFDDFDDLLIDEDIAPAPQSVKASSYAQSSAFVKAPIQTTIgaeklSKEEFIEAWQETAGKPEDNFED 489
Cdd:PRK10263 777 QYQQPQ----QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA-----PQPQYQQPQQPVAPQPQDTLLH 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 490 efdfdaPLTDASG--RPMSRAmQVAKKRLDLPTLPGFELlDKVDpnkkvNFTEEQLSRLselLEIKLQEFNVKAQVVEAQ 567
Cdd:PRK10263 848 ------PLLMRNGdsRPLHKP-TTPLPSLDLLTPPPSEV-EPVD-----TFALEQMARL---VEARLADFRIKADVVNYS 911
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 568 PGPVVTRFELDLAPGVKASKVTNISRDLARSMSMASVRVVEVIPGKPYIGIEVPNSAREMVRLIELLETPAYRDPSALIS 647
Cdd:PRK10263 912 PGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLT 991
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 648 MAMGKDISGNPVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHLLTPVVTD 727
Cdd:PRK10263 992 VVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTD 1071
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 728 MKDAVSALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDLIDPTWKPSDSATQERaPRLTPLPSIVIVADEFA 807
Cdd:PRK10263 1072 MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQH-PVLKKEPYIVVLVDEFA 1150
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 808 DMIMQVGKKAEEMITRLAQKSRAAGIHLLLATQRPSVDVITGLIKANIPTRVALRVNSKIDSRTILDAGGAEDLLGHGDM 887
Cdd:PRK10263 1151 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDM 1230
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 888 LFLGPGKIEPERVHGAFISDDEVNRICDAWRERGEPDYVDEILTPFDEEPASRGFeegDGASDRDALYDQCVSFVLETRK 967
Cdd:PRK10263 1231 LYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGF---DGAEELDPLFDQAVQFVTEKRK 1307
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 742929088 968 ASTSSLQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDIL 1009
Cdd:PRK10263 1308 ASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVL 1349
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
630-843 |
1.55e-73 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 241.90 E-value: 1.55e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 630 LIELLETPAYRDPSALISMAMGKDISGNPVLTDLAKAP-HMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQ 708
Cdd:pfam01580 1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 709 LELANYNDIPHLLT-PVVTDMKDAVSALNWCVNEMERRYKLMSFLKIRKLSDYNRKVEEAIANGEDLIDPTWKPSDSATq 787
Cdd:pfam01580 81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGFGDVFLVIYGVHVMC- 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 788 ERAPRLTPLPSIVIVADEFADMIMQVGKK----AEEMITRLAQKSRAAGIHLLLATQRPS 843
Cdd:pfam01580 160 TAGRWLEILPYLVVIVDERAELRLAAPKDsemrVEDAIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK_alpha |
pfam17854 |
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell ... |
521-622 |
7.19e-40 |
|
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally and reverse direction. FtsK can be split into three domains called alpha (this entry), beta and gamma. The alpha and beta domains contain the core ATPase machinery of the DNA translocase.
Pssm-ID: 436096 [Multi-domain] Cd Length: 101 Bit Score: 142.67 E-value: 7.19e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 521 LPGFELLDKVDPNKKVnFTEEQLSRLSELLEIKLQEFNVKAQVVEAQPGPVVTRFELDLAPGVKASKVTNISRDLARSMS 600
Cdd:pfam17854 1 LPPLDLLEPPPTSSQK-VDEEELEETAEKLEETLAEFGIEAKVVGVTPGPVVTLYELEPAPGVKVSKITNLSDDLALALS 79
|
90 100
....*....|....*....|..
gi 742929088 601 MASVRVVEVIPGKPYIGIEVPN 622
Cdd:pfam17854 80 APSIRIVAPIPGKSTIGIEVPN 101
|
|
| FtsK_4TM |
pfam13491 |
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the ... |
16-169 |
2.11e-37 |
|
4TM region of DNA translocase FtsK/SpoIIIE; 4TM_FtsK is the integral membrane domain of the FtsK DNA tranlocases. During sporulation in Bacillus subtilis, the SpoIIIE protein is believed to form a translocation pore at the leading edge of the nearly closed septum. The E. coli FtsK protein is homologous to SpoIIIE, and can free chromosomes trapped in vegetative septa.
Pssm-ID: 463896 Cd Length: 171 Bit Score: 138.10 E-value: 2.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 16 LFLVSFGIYMFLATVTYTPFDPGWMHISSDTQQVSNASGIAGAWIADLLFGFLGWASLLIPIFLFveaiqVWWPHSFLNR 95
Cdd:pfam13491 10 LALLLLGLFLLLALVSYSPADPSWSTSGSGAAPVHNWGGRFGAWLADLLLQLFGYSAWLLPVALL-----YWGWRLFRRR 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 742929088 96 PFRYAAQFF-----LILVVSSLLYLHWNVPADTLDNAAGGIIGYELGQSLSQLLTIYGATLFLLVFGVVLFTLAFGVQW 169
Cdd:pfam13491 85 SLERRWLRLlgfllLLLASSALFALRLPSLEFGLPGGAGGVIGRLLANALVTLLGFTGATLLLLALLAIGLSLVTGFSW 163
|
|
| FtsK_gamma |
pfam09397 |
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix ... |
949-1010 |
2.94e-30 |
|
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 462786 [Multi-domain] Cd Length: 63 Bit Score: 113.62 E-value: 2.94e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 742929088 949 SDRDALYDQCVSFVLETRKASTSSLQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDILV 1010
Cdd:pfam09397 1 EEEDELYEEAVEIVIETGKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPADGSKPREVLI 62
|
|
| Ftsk_gamma |
smart00843 |
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ... |
949-1010 |
5.74e-30 |
|
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 197911 [Multi-domain] Cd Length: 63 Bit Score: 112.89 E-value: 5.74e-30
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 742929088 949 SDRDALYDQCVSFVLETRKASTSSLQRKFSLGYNRAARIIDQMEENGIVSAMGANGKRDILV 1010
Cdd:smart00843 1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLV 62
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
640-908 |
2.00e-27 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 119.31 E-value: 2.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 640 RDPSALISMAMGKDISGNPVLTDLAKA------PHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQ----L 709
Cdd:TIGR03924 403 RPGRDRLRVPIGVGDDGEPVELDLKESaeggmgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKGgatfL 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 710 ELAnynDIPH---LLT------PVVTDMKDAVSAlnwcvnEMERRYKLMSFL-KIRKLSDYNRkveeAIANGEDlidptw 779
Cdd:TIGR03924 483 GLE---GLPHvsaVITnladeaPLVDRMQDALAG------EMNRRQELLRAAgNFANVAEYEK----ARAAGAD------ 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 780 kpsdsatqeraprLTPLPSIVIVADEFADMIMQVGKKAE--EMITRLAqksRAAGIHLLLATQRPSVDVITGLiKANIPT 857
Cdd:TIGR03924 544 -------------LPPLPALFVVVDEFSELLSQHPDFADlfVAIGRLG---RSLGVHLLLASQRLDEGRLRGL-ESHLSY 606
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 742929088 858 RVALRVNSKIDSRTILDAGGAEDL---LGHGdmlFLGPGKIEPERVHGAFISDD 908
Cdd:TIGR03924 607 RIGLKTFSASESRAVLGVPDAYHLpstPGAG---YLKVDTAEPVRFRAAYVSGP 657
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
538-873 |
5.29e-25 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 112.77 E-value: 5.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 538 FTEEQLSRLSE----LLEIKLQEfnvKAQVVEAQPGPVVTRFELDlapGVKASKVTNISRdlarsmSMASVRVVEVIPgk 613
Cdd:TIGR03928 345 FVQDVMESLPEnvktVIDIKNRN---EGEIVLEEGELVEKSFTPD---HLDNEDLEEYSR------TLAPLNHLQNLK-- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 614 pyigievpNSAREMVRLIELL---------------ETPAYRDPSALISMAmGKDisgNPVLTDL---AKAPHMLVAGTT 675
Cdd:TIGR03928 411 --------NSIPESVTFLEMYgvkkveelniqerwaKNETYKSLAVPIGLR-GKD---DIVYLNLhekAHGPHGLVAGTT 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 676 GSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELAN-YNDIPHLLTpVVTDMKDAVS--ALNWCVNEMERRYKLMSFL 752
Cdd:TIGR03928 479 GSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANlFKNLPHLLG-TITNLDGAQSmrALASIKAELKKRQRLFGEN 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 753 KIRKLSDY-----NRKVEEaiangedlidptwkpsdsatqeraprltPLPSIVIVADEFADMimqvgKKAE-EMITRL-- 824
Cdd:TIGR03928 558 NVNHINQYqklykQGKAKE----------------------------PMPHLFLISDEFAEL-----KSEQpEFMKELvs 604
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 742929088 825 -AQKSRAAGIHLLLATQRPSvDVITGLIKANIPTRVALRVNSKIDSRTIL 873
Cdd:TIGR03928 605 tARIGRSLGVHLILATQKPS-GVVDDQIWSNSRFKLALKVQDASDSNEIL 653
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
658-873 |
3.00e-15 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 80.80 E-value: 3.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 658 PVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHLLTPVVTDMKDAVS-ALN 736
Cdd:TIGR03928 802 PLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKIEkLIR 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 737 WCVNEMERRYKLMSFLKIRKLSDYNRKVEEaiangedlidptwkpsdsatqeraprltPLPSIVIVADEFaDMIMQVGKK 816
Cdd:TIGR03928 882 RIKKEIDRRKKLFSEYGVASISMYNKASGE----------------------------KLPQIVIIIDNY-DAVKEEPFY 932
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 817 A--EEMITRLAQKSRAAGIHLLL-ATQRPSVDVItglIKANIPTRVALRVNSKIDSRTIL 873
Cdd:TIGR03928 933 EdfEELLIQLAREGASLGIYLVMtAGRQNAVRMP---LMNNIKTKIALYLIDKSEYRSIV 989
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1-586 |
4.53e-13 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 73.97 E-value: 4.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 1 MTAVSSvyAQRLLMTLFLVS--FGIYMFLATVTYTPFDPGWMHiSSDTQQVSNASGIAGAWIADLLFGFLGWASLLIPIf 78
Cdd:PRK10263 13 LTKLSS--GRRLLEALLILIvlFAVWLMAALLSFNPSDPSWSQ-TAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 79 LFVEAIQVWWPHSFLNRPFRYAAQFFLILVVSSLLYLHWNVPADTLDN----AAGGIIGYELGQSLSQLLTIYGATLFLL 154
Cdd:PRK10263 89 IIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDiwyfASGGVIGSLLSTTLQPLLHSSGGTIALL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 155 VF---GVVLFTlafgvQWSktWVTL-KAMPSYLQDLFykNVSPNESAYDLTtqpanktaTIKVAEMPNADVTDEAELNVQ 230
Cdd:PRK10263 169 CVwaaGLTLFT-----GWS--WVTIaEKLGGWILNIL--TFASNRTRRDDT--------WVDEDEYEDDEEYEDENHGKQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 231 PEKTQA---KASSTRHDEMAERlFADVLAKeQSQPETIEEKPAPQPENFERTleqAQQLKKDSERLVATGEvwRALQRDd 307
Cdd:PRK10263 232 HESRRArilRGALARRKRLAEK-FINPMGR-QTDAALFSGKRMDDDEEITYT---ARGVAADPDDVLFSGN--RATQPE- 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 308 ashKQEIDALLraaddsNEHPSHEQFQETAYQAKQAQPQASNIhqgldwnddeifDELLAAVPNSKTATDVHTPFVQdhh 387
Cdd:PRK10263 304 ---YDEYDPLL------NGAPITEPVAVAAAATTATQSWAAPV------------EPVTQTPPVASVDVPPAQPTVA--- 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 388 VESAVAPQTSHPSV----ETSAPVSNLNQ--SPKNLSNEQVFDDFDDLLIDEDIAPAPQSVKASSYAQSSAFVKAPIQTT 461
Cdd:PRK10263 360 WQPVPGPQTGEPVIapapEGYPQQSQYAQpaVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPE 439
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 462 igaEKLSKEEFIEAWQETAGKPEDNFEDEFDFDAPLTDAsgrPMSRAMQVAKKRLDLPTLPGFElldKVDPNKKVNF--- 538
Cdd:PRK10263 440 ---QPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE---PLYQQPQPVEQQPVVEPEPVVE---ETKPARPPLYyfe 510
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 742929088 539 -TEEQLSRLSELLEIKLQEfnVKAQVVEAQP-GPVVTRFELDLAPGVKAS 586
Cdd:PRK10263 511 eVEEKRAREREQLAAWYQP--IPEPVKEPEPiKSSLKAPSVAAVPPVEAA 558
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
636-919 |
1.28e-08 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 58.08 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 636 TPAYRDPSALISMAMGKD---------ISGNPVLTDLAK--APHMLVAGTTGSGKSVAVNSMILSMLLKYTPdqlrLILI 704
Cdd:COG0433 6 SPVYLADDEELEELLGDGggiligkllSPGVPVYLDLDKllNRHILILGATGSGKSNTLQVLLEELSRAGVP----VLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 705 DPK--------------QLELANYNDIPHL------LTPVVTDMKDAV-----------SALNWCVNEMERRYK------ 747
Cdd:COG0433 82 DPHgeysglaepgaeraDVGVFDPGAGRPLpinpwdLFATASELGPLLlsrldlndtqrGVLREALRLADDKGLllldlk 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 748 -LMSFLK-IRKLSDYNRKVE-----------EAIANGEDLIDPTWKPSDSATQERAP----RLTPLPS------------ 798
Cdd:COG0433 162 dLIALLEeGEELGEEYGNVSaasagallrrlESLESADGLFGEPGLDLEDLLRTDGRvtviDLSGLPEelqstfvlwllr 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 799 ------------------IVIVADE---FADmimQVGKKAEEMITRLAQKSRAAGIHLLLATQRPSvDVITGlIKANIPT 857
Cdd:COG0433 242 elfearpevgdaddrklpLVLVIDEahlLAP---AAPSALLEILERIAREGRKFGVGLILATQRPS-DIDED-VLSQLGT 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 858 RVALRVNSKIDSRTI------LDAGGAEDL--LGHGDMLFLGPGKIEPERVHGAFISDDEVNRICDAWRE 919
Cdd:COG0433 317 QIILRLFNPRDQKAVkaaaetLSEDLLERLpsLGTGEALVLGEGIPLPVLVKIRLPESRPGGESPDLVRE 386
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
658-870 |
2.23e-08 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 58.08 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 658 PVLTDLAKAP-HMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPKQLELANYNDIPHlLTPVVTDMK-DAVSAL 735
Cdd:TIGR03925 70 PLVVDLSGAAgHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLASLADLPH-VGGVAGRLDpERVRRT 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 736 nwcVNEME----RRYKLMSFLKIRKLSDYnRKVEEAIANGEDlidptwkpsdsatqeraprltPLPSIVIVADEFADMiM 811
Cdd:TIGR03925 149 ---VAEVEgllrRRERLFRTHGIDSMAQY-RARRAAGRLPED---------------------PFGDVFLVIDGWGTL-R 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 742929088 812 QVGKKAEEMITRLAQKSRAAGIHLLLATQRPSvdVITGLIKANIPTRVALRVN----SKIDSR 870
Cdd:TIGR03925 203 QDFEDLEDKVTDLAARGLAYGVHVVLTASRWS--EIRPALRDLIGTRIELRLGdpmdSEIDRR 263
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-863 |
2.80e-07 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 50.68 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 668 HMLVAGTTGSGKSVAVNSMILSMLLKYTpdqlRLILIDPKqlelanyNDIPhLLTPVVTDMKDAVSAL--NWcvnemerr 745
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGG----SVIITDPK-------GELF-LVIPDRDDSFAALRALffNQ-------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 746 ykLMSFLKIRklsdynrkveeaiangedlidptwkpSDSATQERAPRltplpsIVIVADEFADMImqvgkkAEEMITRLA 825
Cdd:cd01127 61 --LFRALTEL--------------------------ASLSPGRLPRR------VWFILDEFANLG------RIPNLPNLL 100
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 742929088 826 QKSRAAGIHLLLATQ------RPSVDVITGLIKANIPTRVALRV 863
Cdd:cd01127 101 ATGRKRGISVVLILQslaqleAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
650-708 |
4.07e-07 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 53.80 E-value: 4.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 742929088 650 MGKDISGNPVLTDL---AKAPHMLVAGTTGSGKSVAVNSMILSMlLKYTPdqlRLILIDPKQ 708
Cdd:COG3451 185 LLNTRSGTPVFFDFhdgLDNGNTLILGPSGSGKSFLLKLLLLQL-LRYGA---RIVIFDPGG 242
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
658-730 |
9.59e-07 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 52.69 E-value: 9.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 658 PVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDQLRLILIDPK--------QLELANYNDIPHLLTPVVTDMK 729
Cdd:TIGR03925 355 PVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRrtllgavpEDYLAGYAATSAALTELIAALA 434
|
.
gi 742929088 730 D 730
Cdd:TIGR03925 435 A 435
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
658-853 |
3.48e-06 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 51.14 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 658 PVLTDLAKAPHMLVAGTTGSGKSVAVNSMILSMLLKYTPDqlrLILIDPKQLELANYNDIPHLLTPVV--TDMKDAVSAL 735
Cdd:TIGR03928 1088 PVYIDLTENPHLLIVGESDDGKTNVLKSLLKTLAKQEKEK---IGLIDSIDRGLLAYRDLKEVATYIEekEDLKEILAEL 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 736 nwcVNEMERRYKLMSflkirklsdynrkveEAIANGEDliDPTWKPsdsatqeraprltplpsIVIVADEFADMIMQVGK 815
Cdd:TIGR03928 1165 ---KEEIELREAAYK---------------EALQNETG--EPAFKP-----------------ILLIIDDLEDFIQRTDL 1207
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 742929088 816 KAEEMITRLAQKSRAAGIHLLLATQRPSV----DVITGLIKA 853
Cdd:TIGR03928 1208 EIQDILALIMKNGKKLGIHFIVAGTHSELsksyDGVPKEIKQ 1249
|
|
| TauE |
pfam01925 |
Sulfite exporter TauE/SafE; This is a family of integral membrane proteins where the alignment ... |
11-164 |
2.73e-04 |
|
Sulfite exporter TauE/SafE; This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.
Pssm-ID: 460386 Cd Length: 235 Bit Score: 43.73 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 11 RLLMTLFLVSFGIYMFLatvtytpfdpgWMHISSDTQQVSNASGIAGAWIADLLFGFL------GWASLLIPIFLFveai 84
Cdd:pfam01925 92 KLLFGVLLLLAALLMLL-----------RRRLGAAPRARRRRPGPLALALLGGLIGFLsglfgiGGGFLLVPALLY---- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 85 qvwwphsFLNRPFRYA-----AQFFLILVVSSLLYLHW-NVPADTLDN-AAGGIIGYELGQSLSQLLtiyGATLFLLVFG 157
Cdd:pfam01925 157 -------LLGLPLKKAvgtslLLFLVSNLAALLGYALLgAVDWPLLLLlLLGALLGAYLGARLARRL---PPRLLRRLFA 226
|
....*..
gi 742929088 158 VVLFTLA 164
Cdd:pfam01925 227 VLLLLVG 233
|
|
| Colicin_V |
pfam02674 |
Colicin V production protein; Colicin V production protein is required in E. Coli for colicin ... |
53-175 |
8.31e-04 |
|
Colicin V production protein; Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.
Pssm-ID: 460647 Cd Length: 143 Bit Score: 40.59 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 53 SGIAGAW--IADLLFGFLGWASLLIPIFLFVEAIQVWWPHSFLNRPFRYAAQFFLILVVSSLL------YLHWNV---PA 121
Cdd:pfam02674 12 SALLGLRrgFVREVLSLLGWVVAFVVASLFYPPLAPLLASLILSPALAAAVAFILLFLVVLLIgsllgvLLRKLVrltGL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 742929088 122 DTLDNAAGGIIGyelgqslsqlltiyGATLFLLVFGVVLFTLAFGVQWSKTWVT 175
Cdd:pfam02674 92 GGLDRLLGAIFG--------------LLRGLLIVSVLLFLLALFPLPGPPEWLR 131
|
|
| ECF-S |
COG4720 |
ECF-type riboflavin transporter, membrane (S) component [Coenzyme transport and metabolism]; |
53-148 |
1.40e-03 |
|
ECF-type riboflavin transporter, membrane (S) component [Coenzyme transport and metabolism];
Pssm-ID: 443755 [Multi-domain] Cd Length: 170 Bit Score: 40.60 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 53 SGIAGAWIADLLFGFLGWAslliPIFLFVEAIQVW----WPHSFLNRPFRYAAQFFLI---------LVVSSLLYLHWN- 118
Cdd:COG4720 58 AGGIGSALADLLSGYPIWA----PWTFIIKGLEGLivglIAKKLKKKSFKKIILANILgglvmvigyYLAAPILYGGFAa 133
|
90 100 110
....*....|....*....|....*....|....
gi 742929088 119 ----VPADTLDNAAGGIIGYELGQSLSQLLTIYG 148
Cdd:COG4720 134 alqsIPGNLLQAVVGAIIALILLKALKKIRKKKG 167
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
668-707 |
8.22e-03 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 39.58 E-value: 8.22e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 742929088 668 HMLVAGTTGSGKSVAVNSMILSMLLKytpdQLRLILIDPK 707
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLTQLAR----GESVVVTDPK 36
|
|
| TauE |
COG0730 |
Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family [Inorganic ion transport ... |
11-165 |
9.22e-03 |
|
Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family [Inorganic ion transport and metabolism];
Pssm-ID: 440494 Cd Length: 250 Bit Score: 39.02 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 11 RLLMTLFLVSFGIYMFLatvtytpfdpGWMHISSDTQQVSNASGIAGAWIAdLLFGFL------GWASLLIPIFLfveai 84
Cdd:COG0730 100 KLLFGVLLLLVALLMLL----------RPKPGAEPERRLPRRSPLLLLLLG-FVIGFLsglfgiGGGFLLVPALV----- 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 742929088 85 qvwwphSFLNRPFRYA-----AQFFLILVVSSLLYL---HWNVPAdTLDNAAGGIIGYELGQSLSQLLtiyGATLFLLVF 156
Cdd:COG0730 164 ------LLLGLPLKRAvatslALIFVTALAGLIGFAllgYVDWPL-ALLLALGSLLGAYLGARLARRL---PPKLLRRLF 233
|
....*....
gi 742929088 157 GVVLFTLAF 165
Cdd:COG0730 234 AVVLLLVGL 242
|
|
| |
