NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|728786687|gb|AIY69441|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Pomarea mendozae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 3.79e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 3.79e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 6.53e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 6.53e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  14 ILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  90 ---THPTSCLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK----FPPMTLLYMTSHSLNP---T 152
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 153 LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLS--FYL--YTLMTAAVFLTFNSMK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 728786687 224 VLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.95e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 8.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   23 SNHWVMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   91 HPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLL-STAMKFPP-----MTLLYMTSHSLNPTLLTTMAILSTAM 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIII----IYSPKLTLLSFYLYTLMTAAVFLTFNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 728786687  236 KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 9.74e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 9.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   14 ILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   93 TSCLILT------------AAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK---FPPMTLLYMTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  154 LTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTL--LSFYL--YTLMTAAVFLTFNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 728786687  227 ---LSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.99  E-value: 3.79e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.03e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 384.66  E-value: 1.03e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 3.13e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 383.39  E-value: 3.13e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSlNPTLLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 728786687 321 -VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 1.24e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 328.34  E-value: 1.24e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....
gi 728786687 319 KPVNISIAILTTLSIVLLPISPVI 342
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 4.27e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 291.49  E-value: 4.27e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 1.46e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.07  E-value: 1.46e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 TGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 728786687 321 VNISIAILTTLSIVLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.02e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.34  E-value: 1.02e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   1 MNPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  81 tgqwdITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLymtSHSLNPTLLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 161 STAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQwhTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                        330       340
                 ....*....|....*....|....*
gi 728786687 321 VNISIAILTTLSIVLLPISPVIASI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 8-275 9.84e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 161.21  E-value: 9.84e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   8 VFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDIT 87
Cdd:MTH00144   8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  88 qlthptscLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNP-TLLTTMAILSTAMGG 166
Cdd:MTH00144  88 --------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 167 WMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFnSMKVLKLSTLMTAWTKTPSLSTILLL 246
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLSIIS 238

                        250       260
                 ....*....|....*....|....*....
gi 728786687 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 9-275 8.11e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.79  E-value: 8.11e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   9 FIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawyTGQWDITQ 88
Cdd:MTH00011  11 FSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  89 LTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSTAMGGWM 168
Cdd:MTH00011  85 LLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 169 GLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSLSTILLLTL 248
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244

                        250       260
                 ....*....|....*....|....*..
gi 728786687 249 LSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 3.59e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.35  E-value: 3.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   8 VFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  88 QLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHslNPTLLTTMAILSTAMGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 168 MGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSLSTILLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260
                 ....*....|....*....|...
gi 728786687 248 LLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 6.53e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.59  E-value: 6.53e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  14 ILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  90 ---THPTSCLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK----FPPMTLLYMTSHSLNP---T 152
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 153 LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLS--FYL--YTLMTAAVFLTFNSMK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 728786687 224 VLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.95e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.32  E-value: 8.95e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   23 SNHWVMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   91 HPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLL-STAMKFPP-----MTLLYMTSHSLNPTLLTTMAILSTAM 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIII----IYSPKLTLLSFYLYTLMTAAVFLTFNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 728786687  236 KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.07e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.80  E-value: 1.07e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  13 LILGSTITISSNHWVMAWTGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  79 WYTGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYmtSHSLNPTLLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 159 ILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIII----IYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 728786687 233 AWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 2.30e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 100.28  E-value: 2.30e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  14 ILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  93 TS------------CLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK---FPPMT-LLYMTSHSLNPT---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 154 LTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLS--FYL--YTLMTAAVFLTFNSMK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 728786687 225 LKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVI 281
Cdd:PRK05777 353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 2.86e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.09  E-value: 2.86e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   8 VFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  87 ----TQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTtmAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 163 AMGGWMGLNQTQIRKIMAFSSISHLGW----MAIIIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLK--LSTLMTAWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 728786687 237 TPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 9.74e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 9.74e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   14 ILGSTITISSNHWVMAWTGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   93 TSCLILT------------AAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK---FPPMTLLYMTS----HSLNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  154 LTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTL--LSFYL--YTLMTAAVFLTFNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 728786687  227 ---LSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 5.13e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 81.35  E-value: 5.13e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  13 LILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  92 ---------PTSCLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMK--------------FPPMTLLYMTshs 148
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFLG--- 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 149 lnpTLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIiiiyspkltLLSFYLYTLMTAAVFLTFNSM------ 222
Cdd:COG0651  273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL---------GLGLGTPLGLAGALFHLLNHAlakall 340

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 728786687 223 -----------KVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:COG0651  341 flaagaieratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 8.92e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 8.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  15 LGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAI---------EAATKYFLVQAAASALVLFSSMTNAWYTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  84 --WDITQLTHPTS----------CLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLymTSHSLNP 151
Cdd:MTH00198 279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 152 TLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLY-------TLMTAAVFLTF----- 219
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 728786687 220 -------------NSMKVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 8-263 7.90e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 7.90e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   8 VFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSsmtnaWYTGQ- 83
Cdd:CHL00049 115 LFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGLs 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  84 ------WDI------TQLTHPTSCLI----LTAAISMKLGLVPFHFWFPEVLQGS-----------SLTIGLLLSTAMkf 136
Cdd:CHL00049 190 ggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI-- 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 137 ppMTLLYMTSHSLNPTLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIII-------YSPKLTLLSFYLY- 208
Cdd:CHL00049 268 --FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFm 345

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 209 TLMTAAVFLTFNsmkvLKLST-----LMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 346 NLGTFACIVLFG----LRTGTdnirdYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 4.94e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 4.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWYTGQwdiTQL--------THPTSCLILT-----AAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 116 PEVLQGSSLTIGLLLSTAMK---FPPMTLLYMTSHSLNPT----LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 189 WMAIIIIYSPKLTLLSFYLYtlMTAAVFLTFNSMKVLKLSTLMTA----------WTKTPSLSTILLLTLLSLAGLPPLT 258
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                 ....*
gi 728786687 259 GFLPK 263
Cdd:PRK02504 392 GFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 8.46e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.81  E-value: 8.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  33 LEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFS---------SMTNAWYTGQWDITQLTHPTSCL-ILTAA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 102 ISMKLGLVPFHFWFPEVLQG--SSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTT------MAILSTAMGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 174 QIRKIMAFSSISHLGWMAI---IIIYSPKLTLLSFYLYTLMTAAVFLTFNS--MKVL---------------KLSTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHalYKALlfltagaviyetgtrNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 728786687 234 WTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 3.51e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 3.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQW--DITQLTH-----PTSCLILTA---AISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 119 LQ-----GSSLTIGLLLSTA----MKFPpMTLLYMTSHSLNPTLLTtMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 728786687 190 MAI 192
Cdd:COG1008  314 VLL 316
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 1.36e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 1.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   2 NPQAKTVFIVSLILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWYT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  82 GQWDIT-------QLTHPTSCLI----LTAAISMKLGLVPFHFWFPE-----------VLQG--SSL-TIGLLLSTAMkF 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLgAYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 137 PPMTLLY----MTSHSLNPTLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWmaiIIIYSPKLTLLSF------- 205
Cdd:PRK08668 254 PGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhv 330

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 206 YLYTLMTAAVFLTFNSM----KVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVI 281
Cdd:PRK08668 331 FNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410


                 .
gi 728786687 282 I 282
Cdd:PRK08668 411 A 411
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 9.96e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 53.34  E-value: 9.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwYTGQWDITQLTH--PTSCLILTA------AIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 104 MKLGLVPFHFWFPEVLQGSSLTIGLLLS---TAMKFPPMTLLYMT-------SHSLNPTLLTTMAILSTAMGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSglvTKVAVYALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 174 QIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYT-----------LMTAAVFLTFNSMKVLKLSTLMTawtKTPSLST 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 728786687 243 ILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 3.70e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 3.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   50 PRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQW----DITQLTHPTSC-----LILTAAISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  119 ---LQGSSLTIGLLLSTA----MKFpPMTLLYMTSHSLNPtLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMa 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV- 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  192 IIIIYSPKLTLLSFYLYT-----LMTAAVFL----TFNSMKVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLP 262
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQmishgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388


                  ....*.
gi 728786687  263 KWLIIQ 268
Cdd:TIGR01972 389 EFLILL 394
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.66e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  96 LILTAAISmKLGLVPFHFWFPEVLQGSSLTIGLLLSTAM---------KFPPMtllYMTSHSLNPTLLTtMAILSTAMGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 167 WMGLNQTQIRKIMAFSSISHLGWMAIII-IYSPKLTLLSFYL---YTLMTAAVFLTFN-------SMKVLKLSTLmtaWT 235
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMllaHALFKAALFLVVGiidhstgTRDIRKLSGL---GR 359

                        170       180
                 ....*....|....*....|....*...
gi 728786687 236 KTPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 5.06e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.02  E-value: 5.06e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 728786687  295 RLAYCATITLPPHTTNHMKQWHTNKPVNI-SIAILTTLSIVLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 1.51e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.35  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWY----TGQWDITQLTH---PTSCLILT-----AAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 118 VLQ-----GSSLTIGLLLSTA----MKFPpMTLLYMTSHSLNPtLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                 ....*.
gi 728786687 189 WMAIII 194
Cdd:PRK05846 315 FVTLGI 320
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.72e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.71  E-value: 2.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  92 PTSCLILTAAISMKLGLVPFhFWFPEVLQGSSLTIGLLLSTAMK-------FPPMTLLYMTSHSLNPTLLTTMAILsTAM 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAI-TMV 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 165 GGWMG-LNQTQIRKIMAFSSISHLGWM-AIIIIYSPK-LTLLSFYLYTLMT--AAVFLTFNSMKVL----KLSTLMTAWT 235
Cdd:PRK12663 285 IGALGaLAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYR 364

                        170       180       190
                 ....*....|....*....|....*....|...
gi 728786687 236 KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-215 2.76e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.90  E-value: 2.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  13 LILGSTITISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  87 TQLTHPTSCL---ILTAAISM-------KLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPT---- 152
Cdd:PRK08676 191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 728786687 153 ----LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYTLMTAAV 215
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 3.29e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.46  E-value: 3.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  55 AATKYFLVQAAASALVLFSSMTNAWYTG-------QWDITQLTHPTSCLILTA---AISMKLGLVPFHFWFPEVLQGSSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 125 TIGLLLS-TAMKFPPMTLL------YMTSHSLNPTLLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYS 197
Cdd:PRK06473 238 PVSVLLAgVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 198 PKLTLLSFYL----YTLMTAAVFLTF-------NSMKVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 318 TPLSILAAVFqmisHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 4.49e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 4.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  20 TISSNHWVMAWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSS----------MTNAWYTGQWD--IT 87
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWTelLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  88 QLTHPTSCLILTAAISM------KLGLVPFHFWFPEVLQG-----SSLTIGLLLSTA----MKFPPMTLLYMTSHSLNPt 152
Cdd:PRK06458 204 HASLLDPTLMKLAFVFLligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAlyavLRYYILIDAAIGSDFPGR- 282

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 728786687 153 LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-282 5.18e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.91  E-value: 5.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  96 LILTAAISmKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPT-----LLTTMAILSTAMGGWMGL 170
Cdd:PRK12647 200 LVLGGAFT-KSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAV 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 171 NQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLY----TLMTAAVFLTFNSMK-------VLKLSTLmtaWTKTPS 239
Cdd:PRK12647 279 RQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPI 355

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 728786687 240 LSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:PRK12647 356 TAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-190 7.07e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 44.37  E-value: 7.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  23 SNHWVMAWTGLEINTLAVLPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTH---------- 91
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  92 --PTSCLILTAAISmKLGLVPFHFWFPEVLQGSSLTIGLLLSTAM---------KFPPMTllymtshSLNPTLLTTMAIL 160
Cdd:COG1009  210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPLF-------ALSPVWLTVVAII 281

                        170       180       190
                 ....*....|....*....|....*....|...
gi 728786687 161 STA---MGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:COG1009  282 GAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.19e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.79  E-value: 1.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTH--PTSCLILTAAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 111 FHFWFPEVLQGSSLTIGLLLSTAMK----FPPMTLLYMTSHSLNPtlLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 187 LGWmaiiIIYSPKLTLLSFYLYTLMTAAVFLTFNSMKVLKLSTLMTAWTKTPSLSTILLLTLLSlAGLPPLTGFLPKWLI 266
Cdd:PRK07234 281 LGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMASFSI-AGFPLLAGFVSKVLT 355


                 ....*
gi 728786687 267 IQELT 271
Cdd:PRK07234 356 LKNLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-281 1.24e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.48  E-value: 1.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  34 EINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQ-----LTHPTSCLILTAAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 109 V------PFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLL-------YMTSH-SLNPTLLTTMAILSTAMGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSYfPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 175 IRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLYT----LMTAAVFLTFNSM----KVLKLSTLMTAWTKTPSLSTILLL 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 728786687 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVI 281
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAII 404
PRK12650 PRK12650
DUF4040 family protein;
87-263 1.51e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.49  E-value: 1.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  87 TQLTHPTSCLILTAAISmKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTS--HSLNPT---LLTTMAILS 161
Cdd:PRK12650 204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMIT 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 162 TAMGGWMGLNQTQIRKIMAFSSISHLGWM-AIIIIYSPkltllsfylyTLMTAAVFLTFnSMKVLKLSTLMTA------- 233
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTP----------FALTAAVVHTL-AHALFKSSLFMLIgvvdhqa 351

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 728786687 234 -----------WTKTPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 352 gtrdirrlgslWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-194 2.32e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  28 MAWtglEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQ--WDITQLTH---PTSCLILT--- 99
Cdd:PRK12561 114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyag 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 100 --AAISMKLGLVPFHFWFPEVLQGSSLTIGLLLS-TAMKFPPMTLLYMT------SHSLNPTLLTTMAILSTAMGGWMGL 170
Cdd:PRK12561 191 flIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAgVLLKMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAF 270

                        170       180
                 ....*....|....*....|....
gi 728786687 171 NQTQIRKIMAFSSISHLGWMAIII 194
Cdd:PRK12561 271 AQDNVKRRLAYSSVSHMGFVLLGI 294
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 4.97e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 4.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  55 AATKYFLVQAAASALVLFSSMTNAWYTGQWD------ITQ-LTHPTSCLILTAAI---SMKLGLVPFHFWFPEVLQGSSL 124
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 125 TIGLLLSTAM-KFPPMTLLYM-------TSHSLNPTLLTTMAIlSTAMGGWMGLNQTQIRKIMAFSSISHLGWMAIIIIY 196
Cdd:PRK07363 238 AVAILLGGVLaKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 197 SPKLTLLS---------------FYLYTLMTAAVfltfNSMKVLKLSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 317 GTQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 728786687 262 PKWLIIQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 7.44e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.35  E-value: 7.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWYTGQWDITQLTHPTS---------------CLILTAAISmKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 113 FWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPT-----LLTTMAILSTAMGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 188 GWMAIIIIYSPK------LTLLSFYL--YTLMTAAVFLTFN-------SMKVLKLSTLMTawtKTPSLSTILLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 728786687 253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-268 1.60e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 103 SMKLGLvpfHFWFPEVLQGSSLTIGLLLSTAM----------KFP-----PMTLLymtshslnptLLTTMAILSTAMGGW 167
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMvtagvflmirSFPlfekaPLTLL----------IITIFGALTAFFAAT 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 168 MGLNQTQIRKIMAFSSISHLGWMAIIIIY--SPKLTLLSFYLYTLMTAAVFL---------TFNSMKVLKLSTLMTAwtk 236
Cdd:MTH00032 306 VGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS--- 382

                        170       180       190
                 ....*....|....*....|....*....|..
gi 728786687 237 TPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 4.15e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 4.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 101 AISMKLGLVPFHFWFPEV-----LQGSSLTIGLLLSTA------MKFPpmtLLYMTSHSLNPTLLtTMAILSTAMGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*.
gi 728786687 170 LNQTQIRKIMAFSSISHLGWMAIIII 195
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 4.86e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 4.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  96 LILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLS----TAMKFPPMTLLYMTSHS-------LNPTLLTTMAILSTAM 164
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYDVFKAnfvfttlPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIIIYSPKLTLLSFYLY----TLMTAAVFLTFNSMK----VLKLSTLMTAWTK 236
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKS 372

                        170       180       190
                 ....*....|....*....|....*....|.
gi 728786687 237 TPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-282 5.13e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.64  E-value: 5.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687   9 FIVSLILGSTITISSNHWVMaWTGLEINTLAVLPLISKSHHPRAIEAATKYFLVqAAASALVLFSSMTNAWY--TGQWDI 86
Cdd:PRK06589 122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFLPAVILIYtkTGNLDF 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  87 TQ---LTHPTSCLILTAAISM--KLGLVPFHFWFPEVLQG----SSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTM 157
Cdd:PRK06589 200 VSgglFSKNQSIILLLMFIYGiaKTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAE 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 158 -------AILSTAMGGWMGLNQTQIRKIMAFSSISHLGW--MAIIIIYSPKLTLLSFYLYT--LMTAAVFLTFNSMKVLK 226
Cdd:PRK06589 280 fnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLK 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 227 ----LSTLMTAWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVII 282
Cdd:PRK06589 360 kedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 9.11e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 37.75  E-value: 9.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687  95 CLILTAAISMKLGLVPFHFWFPEVLQGSSLTIGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAI-----LSTAMGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728786687 170 LNQTQIRKIMAFSSISHLGWMAIIIiyspKLTLLSFYLYTLMTAAVF--LTFNS-----------MKVLKLSTLMTAwtk 236
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVAC----GLSHYSISLFHLMNHAFFkaLLFLSagsvihalsdeQDMRKMGGLISF--- 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 728786687 237 TPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH