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Conserved domains on  [gi|727099817|gb|AIY54587|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Rallus elegans ramsdeni]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-227 1.48e-109

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 318.31  E-value: 1.48e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00112  20 TISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00112 100 LALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIM 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00112 180 AFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-227 1.48e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 318.31  E-value: 1.48e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00112  20 TISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00112 100 LALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIM 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00112 180 AFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-200 1.50e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.50e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTAS---- 76
Cdd:COG1007  119 ASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAAggan 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  77 --------ILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKL----PPITILMMTTHSLNP---TLLTTLAIL 141
Cdd:COG1007  199 spllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVL 278

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727099817 142 SAALGGWMGLNQTQLRKILAFSSISHLGWITI-IMTYDP---KLMLLAFFLYCLTTIPIFLTI 200
Cdd:COG1007  279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVI 341
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 4-201 3.25e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.99  E-value: 3.25e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817    4 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQL-----------T 71
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   72 QPTASILLTTAISMKLGLVPFHFWFPEVLQGTS-PITALLLSTMMKLPPITILMMTT--HSLNPT---LLTTLAILSAAL 145
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPtPVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  146 GGWMGLNQTQLRKILAFSSISHLGWITIIM----TYDPKLMLLAFFLYCLTTIPIFLTIN 201
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAG 220
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-197 4.99e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 81.92  E-value: 4.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817    2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ------PT 74
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLflsngmLN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   75 ASILLTTAISM------KLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILM-------MTTHSLNPTLLTTLAIL 141
Cdd:TIGR01770 199 ISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  142 SAALGGWMGLNQTQLRKILAFSSISHLGWITIIMTYDPKL----MLLAFFLYCLTTIPIF 197
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAF 338
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-227 1.48e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 318.31  E-value: 1.48e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00112  20 TISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00112 100 LALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIM 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00112 180 AFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-227 1.58e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 259.74  E-value: 1.58e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00135  20 TFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMIT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPItILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00135 100 LALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKIL 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00135 179 AYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-227 5.86e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 258.31  E-value: 5.86e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00070  20 TLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00070 100 IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIM 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00070 180 AYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMML 246
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-227 7.58e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 245.14  E-value: 7.58e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00105  20 TMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00105 100 IALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKIL 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00105 180 AYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-227 1.17e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 204.05  E-value: 1.17e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLT 80
Cdd:MTH00200  20 TFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLIL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00200 100 LALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKIL 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00200 180 AYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-201 3.74e-64

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 202.47  E-value: 3.74e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLTT 81
Cdd:MTH00041  21 ISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  82 AISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKILA 161
Cdd:MTH00041 101 ALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILA 180

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 727099817 162 FSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTIN 201
Cdd:MTH00041 181 FSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGN 220
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-227 3.24e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 145.74  E-value: 3.24e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWhtgqwdISQLTQPTASILLT 80
Cdd:MTH00160  21 SISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNISSMLIN 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTThslNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00160  95 SSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIILSAIIGAIGGLNQTSLRKIL 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTINTTKTLKLTTMMTSWTKTPAMNAALML 227
Cdd:MTH00160 172 AYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-198 4.16e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 137.32  E-value: 4.16e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISqltqptasILLTT 81
Cdd:MTH00144  21 LSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  82 AISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPI-TILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00144  93 GLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALL 172

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFL 198
Cdd:MTH00144 173 AYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFF 210
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-201 1.38e-36

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 130.67  E-value: 1.38e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTInawhtgQWDISQLTQPTASILLT 80
Cdd:MTH00011  22 ALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNITALMLL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKIL 160
Cdd:MTH00011  96 VSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLL 175

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 727099817 161 AFSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFLTIN 201
Cdd:MTH00011 176 AYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFA 216
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 2-198 1.50e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 106.68  E-value: 1.50e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLtqptasiLLTT 81
Cdd:MTH00197  15 LSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLSVV-------LVIL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  82 AISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHslNPTLLTTLAILSAALGGWMGLNQTQLRKILA 161
Cdd:MTH00197  88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLA 165

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 727099817 162 FSSISHLGWITIIMTYDPKLMLLAFFLYCLTTIPIFL 198
Cdd:MTH00197 166 YSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFL 202
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-200 1.50e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.80  E-value: 1.50e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTAS---- 76
Cdd:COG1007  119 ASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAALAAggan 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  77 --------ILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKL----PPITILMMTTHSLNP---TLLTTLAIL 141
Cdd:COG1007  199 spllllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVL 278

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727099817 142 SAALGGWMGLNQTQLRKILAFSSISHLGWITI-IMTYDP---KLMLLAFFLYCLTTIPIFLTI 200
Cdd:COG1007  279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPlgvSAALFYLLAYLFMNLGAFAVI 341
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 4-201 3.25e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.99  E-value: 3.25e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817    4 SNHWMMAWTGLEINTLAIIPLI-SKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQL-----------T 71
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   72 QPTASILLTTAISMKLGLVPFHFWFPEVLQGTS-PITALLLSTMMKLPPITILMMTT--HSLNPT---LLTTLAILSAAL 145
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPtPVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  146 GGWMGLNQTQLRKILAFSSISHLGWITIIM----TYDPKLMLLAFFLYCLTTIPIFLTIN 201
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAG 220
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 2-171 5.96e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.46  E-value: 5.96e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDI----SQLTQPTAS 76
Cdd:MTH00199 114 VSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGK 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  77 ILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTtlAILSAALGGWMGLNQTQL 156
Cdd:MTH00199 194 ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKI 271

                        170
                 ....*....|....*
gi 727099817 157 RKILAFSSISHLGWI 171
Cdd:MTH00199 272 KRLLAYSGIGHMGFI 286
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-171 1.47e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.11  E-value: 1.47e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTAS---- 76
Cdd:PRK05777 120 VSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALADgsgn 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  77 --------ILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKL----PPITILMMTTHSLNPT---LLTTLAIL 141
Cdd:PRK05777 200 sllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLAIIAIA 279

                        170       180       190
                 ....*....|....*....|....*....|
gi 727099817 142 SAALGGWMGLNQTQLRKILAFSSISHLGWI 171
Cdd:PRK05777 280 SMLVGNLAALSQTNIKRLLAYSSIAHAGYL 309
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 2-200 1.75e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 85.47  E-value: 1.75e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLI-SKSHHPRATEAAIKYFLVQAAASTLLLFS-------------STINAWHTGQWDI 67
Cdd:MTH00196  10 ISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  68 SQLTQPTASILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTthSLNPTLLTTLAILSAALGG 147
Cdd:MTH00196  90 SSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGGLFSLFVGA 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 727099817 148 WMGLNQTQLRKILAFSSISHLGWITIIMTYDP----KLMLLAFFLYCLTTIPIFLTI 200
Cdd:MTH00196 168 IGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSII 224
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-197 4.99e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 81.92  E-value: 4.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817    2 ISSNHWMMAWTGLEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ------PT 74
Cdd:TIGR01770 119 VSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLflsngmLN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   75 ASILLTTAISM------KLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILM-------MTTHSLNPTLLTTLAIL 141
Cdd:TIGR01770 199 ISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  142 SAALGGWMGLNQTQLRKILAFSSISHLGWITIIMTYDPKL----MLLAFFLYCLTTIPIF 197
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAF 338
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-173 3.44e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.42  E-value: 3.44e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  11 WTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ----------PTASILLT 80
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVL-QGTSPITALLLSTMMKLPPITILMMTTHSLNP-------TLLTTLAILSAALGGWMGLN 152
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVLTLLFGAdpalflgTLLLVLGLLTMLVGALGALA 292

                        170       180
                 ....*....|....*....|.
gi 727099817 153 QTQLRKILAFSSISHLGWITI 173
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILL 313
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-173 1.90e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.81  E-value: 1.90e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRAT---------EAAIKYFLVQAAASTLLLFSSTINAWHTGQ----WDIS 68
Cdd:MTH00198 205 IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTIL 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  69 QLTQPTASILL----------TTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLppITILMMTTHSLNPTLLTTL 138
Cdd:MTH00198 285 SATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSV 362

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 727099817 139 AILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:MTH00198 363 AIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
31-173 2.25e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.46  E-value: 2.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  31 PRATEAAIKYFLVQAAASTLLLFSST----INAWHTGQWDISQLTQPTASILLTTA-------ISMKLGLVPFHFWFPEV 99
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817 100 LQGT-SPITALLlSTMMKLP----PITILMMTTHSLNP---TLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWI 171
Cdd:PRK02504 237 YEGSpTPVVAFL-SVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFV 315


                 ..
gi 727099817 172 TI 173
Cdd:PRK02504 316 MI 317
ndhB CHL00049
NADH dehydrogenase subunit 2
 32-173 2.46e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.41  E-value: 2.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  32 RATEAAIKYFLVQAAASTLLL--FSST--INAWHTGQWDI------SQLTQPTAS----ILLTTAISMKLGLVPFHFWFP 97
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  98 EVLQG-----------TSPITALLLSTMMklppITILMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKILAFSSIS 166
Cdd:CHL00049 239 DVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314


                 ....*..
gi 727099817 167 HLGWITI 173
Cdd:CHL00049 315 QIGYVII 321
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 19-173 5.38e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.33  E-value: 5.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  19 LAIIP---LISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQW--DISQLTQPTAS--------ILLTTAISM 85
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  86 KLGLVPFHFWFPEVL-QGTSPITALLLSTMMKLP-------PITILMMTTHSLNPTLLTtLAILSAALGGWMGLNQTQLR 157
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLK 300

                        170
                 ....*....|....*.
gi 727099817 158 KILAFSSISHLGWITI 173
Cdd:COG1008  301 RLIAYSSVSHMGFVLL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 29-173 9.19e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.85  E-value: 9.19e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  29 HHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASIL---LTTAISM--------KLGLVPFHFWFP 97
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  98 EVLQGTSPITALLLS-TM--------MKLPPITilmmtthSLNPTLLTTLAILSAA---LGGWMGLNQTQLRKILAFSSI 165
Cdd:COG1009  236 DAMEGPTPVSALLHAaTMvkagvyllARLSPLF-------ALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTV 308


                 ....*...
gi 727099817 166 SHLGWITI 173
Cdd:COG1009  309 SQLGYMFL 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 61-185 1.85e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 57.24  E-value: 1.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  61 HTGQWDISQL-TQPTASILLTTAISM-------KLGLVPFHFWFPEVLQGTSPITALLLST-MMKLPPITILMMT----- 126
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAaMVKAGIYLVARLApgfad 262

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 727099817 127 THSLNPTLLTtLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITIIMTYDPKLMLLA 185
Cdd:PRK12644 263 VPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALA 320
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-171 4.07e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 4.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  14 LEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQP--------TASILLTTAISM 85
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaenptvvTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  86 KLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPI-----------TILMMTTHSLNpTLLTTLAILSAALGGWMGLNQT 154
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVyaliriyftvfGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQD 293

                        170
                 ....*....|....*..
gi 727099817 155 QLRKILAFSSISHLGWI 171
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYI 310
PRK12650 PRK12650
DUF4040 family protein;
10-171 4.19e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.20  E-value: 4.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  10 AWtglEINTLAIIPLISKSHhPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQ------------LTQPTAsI 77
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGilhsdvwaekpgLTTVVA-V 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  78 LLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMM--TTHSLNPT---LLTTLAILSAALGGWMGLN 152
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRfsPVFHDVAVwnwLLIIVGMITALMGAVFAVQ 292

                        170
                 ....*....|....*....
gi 727099817 153 QTQLRKILAFSSISHLGWI 171
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWI 311
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-171 2.78e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.56  E-value: 2.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  14 LEINTLAIIPLIS-KSHHPRATEAAIKYFLVQAAASTLLLFSSTInawHTGQWD----------ISQLTQPTASI---LL 79
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGtlnmaylavkMSENPTVVAKIalaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  80 TTAISMKLGLVPFHFWFPEVL-QGTSPITALLLstMMKLPPITILMMTTHSL-NPTLLTT--------LAILSAALGGWM 149
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLL--VIKQAGLYALARVLFSIyGPAINLAtvgwviiiLGCLTMFVGVAM 304

                        170       180
                 ....*....|....*....|..
gi 727099817 150 GLNQTQLRKILAFSSISHLGWI 171
Cdd:PRK08376 305 AVVQKDVKRLLAYHSVSQIGYM 326
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 34-173 2.82e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 53.58  E-value: 2.82e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  34 TEAAIKYFLVQAAASTLLLFSSTINAW-HTGQWDISQLTQPTAS-----ILLTTAISMKLGLVPFHFWFPEVLQGT-SPI 106
Cdd:PRK08667 160 TQRAGIFYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASpSNV 239

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727099817 107 TALLLSTMMKLPPITILMMTTHSLNP-----TLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK08667 240 SALMSGVMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILM 311
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-171 4.53e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 52.65  E-value: 4.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  14 LEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ--PTASILLTTAISMKLGLVP 91
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  92 FHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPT--LLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLG 169
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                 ..
gi 727099817 170 WI 171
Cdd:PRK07234 283 FI 284
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 24-189 7.34e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 52.23  E-value: 7.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  24 LISKSHH-PRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ-----------PTASILLTTAISMKLGLVP 91
Cdd:PRK12647 134 LIGFNHErEAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLAsgdvirehplyLAILLLVLGGAFTKSAQFP 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  92 FHFWFPEVLQGTSPITALLLS-TMMKLPpITILMMTTHSLNPTLL--TTLAILSAA---LGGWMGLNQTQLRKILAFSSI 165
Cdd:PRK12647 214 FHFWLPNAMEAPTPVSAYLHSaTMVKAG-IYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYSTV 292

                        170       180
                 ....*....|....*....|....
gi 727099817 166 SHLGWITIIMTYDPKLMLLAFFLY 189
Cdd:PRK12647 293 SALGTLVMLLGLGSELAIKAAVLF 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 36-173 1.77e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.09  E-value: 1.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   36 AAIKYFLVQAAASTLLLFSSTINAWHTG---------QWDISQLTQPTASILLTTAISMKLGLVPFHFWFPEV-LQGTSP 105
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllellNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727099817  106 ITALLLSTMMKLPPITI------LMMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
19-185 5.12e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 49.70  E-value: 5.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  19 LAIIPL---ISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTG--QWDISQL--------TQPTASILLTTAISM 85
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshtlplsTQLLLLAPILVGFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  86 KLGLVPFHFWFPEV-LQGTSPITALLLSTMMKLPPITIL------MMTTHSLNPTLLTTLAILSAALGGWMGLNQTQLRK 158
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180
                 ....*....|....*....|....*..
gi 727099817 159 ILAFSSISHLGWITIIMTYDPKLMLLA 185
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSILA 324
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-173 1.76e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.00  E-value: 1.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLV------QAAASTLLLFSS--------------TINAW 60
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvmgdgemailwTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  61 HTGQWDiSQLTQpTASILLTTAISMKLGLVPFHFWFPEV-LQGTSPITALLLSTMMK---LPPITILMMTTHSLNP---- 132
Cdd:PRK06458 204 HASLLD-PTLMK-LAFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNvalYAVLRYYILIDAAIGSdfpg 281

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 727099817 133 TLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK06458 282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
33-175 2.79e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 47.33  E-value: 2.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  33 ATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASILLTTAISMKLGLV----------------PFHFWF 96
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  97 PEVLQGTSPITALLLSTMMKLPPITIL--MMTTHSLNPTLLTTLAI---LSAALGGWMGLNQTQLRKILAFSSISHLGWI 171
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVarMYPVFEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330


                 ....
gi 727099817 172 TIIM 175
Cdd:PRK07376 331 VMAM 334
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 4-173 4.50e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.67  E-value: 4.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   4 SNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAA------STLLLFSSTINAWHTGQWDISQLTQPT--- 74
Cdd:PRK08676 121 SDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHAsll 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  75 -------ASILLTTAISMKLGLVPFHFWFPEV-LQGTSPITALLLSTMMKLPPITILMMT-------THSLNPTLLTTLA 139
Cdd:PRK08676 201 spsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSallrqsgAAEQFSNVLIGLG 280

                        170       180       190
                 ....*....|....*....|....*....|....
gi 727099817 140 ILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK08676 281 IFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 36-173 9.07e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.96  E-value: 9.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  36 AAIKYFLVQAAASTLLLFS----STINAWHTGQWDISQLTQPTASILLTT--------AISMKLGLVPFHFWFPEV-LQG 102
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPDAhVQA 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727099817 103 TSPITALLLSTMMKLPP-------ITILMMTTHSLNPtLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK05846 242 PTAGSVLLAGILLKMGAygllrfsLPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 14-177 1.13e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 45.35  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  14 LEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWD---ISQLTQPTASIL---LTTAISMKL 87
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFAlsaLSGLHGSLKYLVflgILFAAWGKS 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  88 GLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNP------TLLTTLAILSAALGGWMGLNQTQLRKILA 161
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                        170
                 ....*....|....*.
gi 727099817 162 FSSISHLGWITIIMTY 177
Cdd:PRK06525 302 YSTITQLGYMFFGLSL 317
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 36-173 5.85e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 5.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  36 AAIKYFLVQAAASTLLLFSSTINAWHTGQ--WDISQLTQ---PTASILLT-----TAISMKLGLVPFHFWFPEVL-QGTS 104
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727099817 105 PITALLLSTMMKLPPITILMMT------THSLNPTLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 29-177 6.01e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.66  E-value: 6.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  29 HHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQPTASI--------LLTTAISMKLGLV------PFHF 94
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  95 WFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPT-----LLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLG 169
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 727099817 170 WITIIMTY 177
Cdd:PRK12649 316 YLMTMYGY 323
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 84-175 6.80e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 6.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  84 SMKLGLvpfHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPTLLTTLAI-----LSAALGGWMGLNQTQLRK 158
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKK 315

                         90
                 ....*....|....*..
gi 727099817 159 ILAFSSISHLGWITIIM 175
Cdd:MTH00032 316 VIAYSTCSQLGYMVLII 332
PRK12646 PRK12646
DUF4040 family protein;
91-171 1.05e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 42.82  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  91 PFHFWFPEVLQGTSPITALLLSTMMKLPPITILMMTTHSLNPT-----LLTTLAILSAALGGWMGLNQTQLRKILAFSSI 165
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307


                 ....*.
gi 727099817 166 SHLGWI 171
Cdd:PRK12646 308 SQLGMI 313
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 15-173 1.18e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 42.68  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  15 EINTLA---IIPLISKshhpRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQP-----------TASILLT 80
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGlindtstgfalIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  81 TAISMKLGLVPFHFWFPEVLQGT-SPITALLLSTMMKLP------PITILMMT----------THSLNPTLLTTLAILSA 143
Cdd:PRK08668 204 AFGVAKAGIFPLHVWAPDAYSEApQSFSAVLSGQLSKLGaygfllVLYVLPGTklfsefgtyrGVPLFNYILAWLGNISI 283

                        170       180       190
                 ....*....|....*....|....*....|
gi 727099817 144 ALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILV 313
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
70-171 2.61e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 2.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  70 LTQPTASILLTTAI---SMKLGLVPFHFWFPEVLQGTSPITALLLSTMM-KLPPITILMM-------TTHSLNPTLLTTL 138
Cdd:PRK07363 199 LSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLaKLGTYGLLRFglqlfpqTWSLVAPGLAIIG 278

                         90       100       110
                 ....*....|....*....|....*....|...
gi 727099817 139 AIlSAALGGWMGLNQTQLRKILAFSSISHLGWI 171
Cdd:PRK07363 279 TI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYI 310
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-110 6.08e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.45  E-value: 6.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   1 TISSNHW---MMAW--TGLEINTLaiipLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ--- 72
Cdd:PRK08168 116 LVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALWAhla 191

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 727099817  73 --------PTASILLTTAISMKLGLVPFHFWFPEVLQGTSPITALL 110
Cdd:PRK08168 192 aqgaspslQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-172 9.06e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 39.79  E-value: 9.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  91 PFHFWFPEVLQGTSPITALLLS-TMMKLppiTILMMTThsLNPTLLTT---LAILSAA------LGGWMGLNQTQLRKIL 160
Cdd:PRK12648 225 PFHFWLPHAMAAPTPVSAYLHSaTMVKA---GVFLLAR--LWPVLAGTeewFWIVGGAglitllLGAYFALFQHDLKGLL 299

                         90
                 ....*....|..
gi 727099817 161 AFSSISHLGWIT 172
Cdd:PRK12648 300 AYSTISHLGLIT 311
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 14-171 1.15e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.36  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  14 LEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDISQLTQ------PTASILLTTAISMKL 87
Cdd:PRK08377 137 MEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQlagtidPTVAQVGLALLIFGL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  88 G----LVPFHFWFPEVLQGTS-PITALLLSTMMK-----LPPITILMMTTHSLNPTL--LTTLAILSAALGGWMGLNQTQ 155
Cdd:PRK08377 217 AveaeLFPLNAWAPDAYQAAPhPITVMFSAFVVKaglyaMARILYLMQNANGWSSVLklVIIMATLTVFFAELSALRQKN 296

                        170
                 ....*....|....*.
gi 727099817 156 LRKILAFSSISHLGWI 171
Cdd:PRK08377 297 VKRMIAYSSIGQVGMI 312
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 8-171 1.45e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.10  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   8 MMAWtglEINTLAIIPLISKSH-HPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDIS-----QLTQPTASILLTT 81
Cdd:PRK06521 139 LVAW---ETMSLSSWFLVIANHrEAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAamraaHLSPFWASLVFLL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  82 AI---SMKLGLVPFHFWFPEVLQGT-SPITALLLSTMMKLPPITILMMTTHSLNPT------LLTTLAILSAALGGWMGL 151
Cdd:PRK06521 216 ALfgfGAKAGLVPLHVWLPRAHPAApSHVSALMSGVMLKVAIYGILRVVFDLLGAPgwwwgvLVLALGAISAVLGVLYAL 295

                        170       180
                 ....*....|....*....|
gi 727099817 152 NQTQLRKILAFSSISHLGWI 171
Cdd:PRK06521 296 AEHDLKRLLAYSTIENIGII 315
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 36-173 3.28e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.15  E-value: 3.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  36 AAIKYFLVQAAASTLLLFSS----------TINAWHTGQWDISQLTQPTASILLTTAISMKLGLVPFHFWFPEVL-QGTS 104
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAAlamafygdtpTFDMTALAAKDFGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHgEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727099817 105 PITALLLSTMMKLPPITILMMT------THSLNPTLLTTLAILSAALGGWMGLNQTQLRKILAFSSISHLGWITI 173
Cdd:PRK02546 246 PVHMLLAGILLKMGGYALLRMNagmlpdAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLI 320
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 50-169 4.28e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 37.62  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  50 LLLFSSTINAWHTGQWDISQLTQPTASILLTTAISMKLGLVPFHFWFPEVLQGTSPITALLLSTMMKLPPITILMmtthS 129
Cdd:MTH00211 181 MVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLI----R 256

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 727099817 130 LNPTLLTTLAILSAAL---------GGWMGLNQTQLRKILAFSSISHLG 169
Cdd:MTH00211 257 LSPLFQNNQLILGAVLllgaltmlfGALCALTQNDIKKIVAFSTTSQLG 305
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-174 4.89e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 37.45  E-value: 4.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817   2 ISSNHWMMAWTGLEINTLAIIPLISKSHHPRATEAAIKYFLVQAAASTLLLFSSTINAWHTGQWDI----SQLTQPTASI 77
Cdd:PRK06591 132 IATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMtdiaAYLQEHTNSR 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  78 LLTTAIS-------MKLGLVPFHFWFPEVLQGTSPITALLL---STMM------KLPPITILMMTTHSLNPTLLTTLAIL 141
Cdd:PRK06591 212 IITIAIGffligaiLKTAFFPMHFWMMRAYNNTASVILVYLagiSTIIgiyiiyKFTYIIIGYETIKTAITNFIRPIALA 291

                        170       180       190
                 ....*....|....*....|....*....|...
gi 727099817 142 SAALGGWMGLNQTQLRKILAFSSISHLGWITII 174
Cdd:PRK06591 292 TLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLL 324
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 51-169 8.92e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 36.81  E-value: 8.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  51 LLFSSTINAWHTGQWDISQ--LTQPTASILLTTAI------SMKLGLvpfHFWFPEVLQGTSPITALLLSTMMKLPPITI 122
Cdd:MTH00066 180 LILSMAWLAMNTNSWELQQifLLNDNSTLPLLGLIlaaagkSAQFGL---HPWLPAAMEGPTPVSALLHSSTMVVAGIFL 256

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 727099817 123 L-----MMTThslNPTLLTT---LAILSAALGGWMGLNQTQLRKILAFSSISHLG 169
Cdd:MTH00066 257 LirfhpLLEN---NQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLG 308
ndhF CHL00025
NADH dehydrogenase subunit 5
 91-171 9.40e-03

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 36.79  E-value: 9.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727099817  91 PFHFWFPEVLQGTSPITALL-LSTMMK---------LPPITIL--MMTTHSLnptllttLAILSAALGGWMGLNQTQLRK 158
Cdd:CHL00025 245 PLHVWLPDAMEGPTPISALIhAATMVAagiflvarlLPLFIVIpyIMNLISL-------IGIITALLGATLALAQKDIKR 317

                         90
                 ....*....|...
gi 727099817 159 ILAFSSISHLGWI 171
Cdd:CHL00025 318 GLAYSTMSQLGYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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