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Conserved domains on  [gi|698933615|gb|AIU01951|]
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monosaccharide-transporting ATPase [Clostridium beijerinckii ATCC 35702]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 15-296 1.42e-89

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 268.12  E-value: 1.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  15 KNAVSHVKNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGALVIANGMdvSIDTAKMSFKNYIILFTEKNsLFTWFFN 94
Cdd:COG0395    2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPP--SLLPSEFTLENYRAAFTDGP-FGRYLLN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  95 SLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASAS-- 172
Cdd:COG0395   79 SLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLpf 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:COG0395  159 GIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASF 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 698933615 253 LTPYGNNYNLLFVGSFISVIPVFILFACFQKYFVEGMTAGAVKG 296
Cdd:COG0395  239 QGQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 15-296 1.42e-89

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 268.12  E-value: 1.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  15 KNAVSHVKNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGALVIANGMdvSIDTAKMSFKNYIILFTEKNsLFTWFFN 94
Cdd:COG0395    2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPP--SLLPSEFTLENYRAAFTDGP-FGRYLLN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  95 SLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASAS-- 172
Cdd:COG0395   79 SLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLpf 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:COG0395  159 GIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASF 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 698933615 253 LTPYGNNYNLLFVGSFISVIPVFILFACFQKYFVEGMTAGAVKG 296
Cdd:COG0395  239 QGQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
93-289 4.80e-31

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 117.14  E-value: 4.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  93 FNSLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASAS 172
Cdd:PRK10973  78 LNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:PRK10973 158 ATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGM 237

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 698933615 253 LTPYG--NNYNLLFVGSFISVIPVFILFACFQKYFVEGM 289
Cdd:PRK10973 238 IATGEgtTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 92-275 1.52e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 1.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  92 FFNSLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASA 171
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 172 S------TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTL 245
Cdd:cd06261   81 LlliapfARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 698933615 246 PIGLNTLLTPYGNNYNLLFVGSFISVIPVF 275
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 119-281 2.64e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.16  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  119 MYDFKGKNFLFICVLFVMMVPFEILMLPLY--NQISDMHLTNTYIGIILPTIASASTIFFFRQYLSGIPRDLVEAGRIDG 196
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVviAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  197 ASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGakftlPIGLNTLLTPYGNNYNLLFVGSFISVIPVFI 276
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP-----GLGLLLIEAILGYDYPEIQGPVLAAALILLL 165


                  ....*
gi 698933615  277 LFACF 281
Cdd:pfam00528 166 LNLLV 170
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 15-296 1.42e-89

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 268.12  E-value: 1.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  15 KNAVSHVKNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGALVIANGMdvSIDTAKMSFKNYIILFTEKNsLFTWFFN 94
Cdd:COG0395    2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPP--SLLPSEFTLENYRAAFTDGP-FGRYLLN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  95 SLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASAS-- 172
Cdd:COG0395   79 SLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLpf 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:COG0395  159 GIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASF 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 698933615 253 LTPYGNNYNLLFVGSFISVIPVFILFACFQKYFVEGMTAGAVKG 296
Cdd:COG0395  239 QGQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 15-296 3.09e-54

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 177.65  E-value: 3.09e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  15 KNAVSHVKNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGALVIAngmdVSIDTAKMSFKNYIILFTEKNsLFTWFFN 94
Cdd:COG3833    3 RRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYS----SSLIPENFTLENYKKLFTETP-FLRWFLN 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  95 SLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILP--TIASAS 172
Cdd:COG3833   78 SLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVylGGAIPF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:COG3833  158 NTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSF 237

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 698933615 253 LT-PYGNNYNLLFVGSFISVIPVFILFACFQKYFVEGMTAGAVKG 296
Cdd:COG3833  238 VSdQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
93-289 4.80e-31

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 117.14  E-value: 4.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  93 FNSLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASAS 172
Cdd:PRK10973  78 LNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTLPIGLNTL 252
Cdd:PRK10973 158 ATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGM 237

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 698933615 253 LTPYG--NNYNLLFVGSFISVIPVFILFACFQKYFVEGM 289
Cdd:PRK10973 238 IATGEgtTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
malG PRK10998
maltose ABC transporter permease MalG;
90-296 7.75e-18

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 81.68  E-value: 7.75e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  90 TWFFNSLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLY-------NQISDMHLtNTYIG 162
Cdd:PRK10998  83 LWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYalfdrlgQYIPFIGL-NTHGG 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 163 IILPTIAS-ASTIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGA 241
Cdd:PRK10998 162 VIFAYLGGiALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVN 241

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 698933615 242 KFTLPIGLNTLLTPYGNNYNLLFVGSFISVIPVFILFACFQKYFVEGMTAGAVKG 296
Cdd:PRK10998 242 SYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 92-275 1.52e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 1.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  92 FFNSLFLTIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILPTIASA 171
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 172 S------TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKFTL 245
Cdd:cd06261   81 LlliapfARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 698933615 246 PIGLNTLLTPYGNNYNLLFVGSFISVIPVF 275
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 22-230 1.61e-14

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 71.68  E-value: 1.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  22 KNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGALViangmdvSIDTAKMSFKNYIILFTEkNSLFTWFFNSLFLTIV 101
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFL-------TFPPEGFTLRWYAELFSD-PRLLDALLNSLLIALL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 102 QVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLYNQISDMHLTNTYIGIILP--TIASASTIFFFRQ 179
Cdd:COG1177   73 STLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAhvVFTLPFVVLVVLA 152

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 698933615 180 YLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNL 230
Cdd:COG1177  153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF 203
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
19-226 2.56e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 66.72  E-value: 2.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  19 SHVKNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGalviangmdvsidtakmsFKNYIILFTEkNSLFTWFFNSLFL 98
Cdd:COG1178    2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG------------------LANFWALLSD-PYLWRALGNTLLL 62

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  99 TIVQVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVP-----FEILML----PLYNQisdmhLTNTYIGIILPTIA 169
Cdd:COG1178   63 ALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPpyvvaLAWIALfgpnGLLNT-----LLRALFGLEPPDIY 137

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 170 S------ASTIFFF-------RQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFS 226
Cdd:COG1178  138 GlggiilVLVLFNYpyvylllRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLC 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 119-281 2.64e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.16  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  119 MYDFKGKNFLFICVLFVMMVPFEILMLPLY--NQISDMHLTNTYIGIILPTIASASTIFFFRQYLSGIPRDLVEAGRIDG 196
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVviAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  197 ASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGakftlPIGLNTLLTPYGNNYNLLFVGSFISVIPVFI 276
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP-----GLGLLLIEAILGYDYPEIQGPVLAAALILLL 165


                  ....*
gi 698933615  277 LFACF 281
Cdd:pfam00528 166 LNLLV 170
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
26-226 3.46e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 60.56  E-value: 3.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  26 KRILIFMLFAVIAVILLIPFYTLFVSTFkdgalviangmdVSIDTAKMSFKNYIILFTEKnSLFTWFFNSLFLTIVQVVC 105
Cdd:COG1178  287 RWLALALCLLLVLLGLLLPLLALLLWSL------------TKALDDNLTLDNYRFVLLDP-SLLRALLNSLLLALLAALL 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 106 QLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVP---FEILMLPLYNQISDMHLTNTYIGIILPTIASASTiFFFRQYLS 182
Cdd:COG1178  354 AVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPgivLGLGLLLLFNRPLPLLLYGTLAILVLAYVVRFLP-FALRSLEA 432

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 698933615 183 G---IPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFS 226
Cdd:COG1178  433 AlaqIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
10-228 1.95e-09

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 57.45  E-value: 1.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  10 KKNTQKNAVSHVKNLPKRILIFML--FAVIAVILLIP-FYTLFVSTFkdgalviangmDVSIDTAKMSF---KNYIILFT 83
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAYLFLLpaLLLLLVFVLYPlLYTLYLSFT-----------DWNLLGPPPEFvglDNYARLFT 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  84 EKNslftwFFNSLFLTIVQVVCQLFISAFVAYGFAMY---DFKGKNFLFICVLFVMMVP-------FEILMLPLY---NQ 150
Cdd:COG1175   71 DPR-----FWNALGNTLLFTVVSVPLQLVLGLLLALLlnrKLRGRGFFRTLFFLPWVISpvvvaliWKWLFNPDYgllNA 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 151 I-SDMHLTNT---------YIGIILPTI--ASASTIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAM 218
Cdd:COG1175  146 LlGALGLEPInwlgdpslaLPAVIIVTVwkGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFV 225

                        250
                 ....*....|
gi 698933615 219 AILNAMFSWN 228
Cdd:COG1175  226 LVLSTIGALQ 235
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 22-221 5.08e-09

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 55.92  E-value: 5.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  22 KNLPKRILIFMLFAVIAVILLIPFYTLFVSTFKDGAlviangmDVSIDTAKMSFKNYIILFTEKNSLFTwFFNSLFLTIV 101
Cdd:COG1176    7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRD-------PYGGVVPGFTLENYARLFTDPLYLKV-LLRTLWIALL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 102 QVVCQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVPFEILMLPLY---------NQI--------SDMHLTNTYIGI- 163
Cdd:COG1176   79 TTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIvllgrngllNSLllalglidEPLRLLYTEFAVv 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 698933615 164 -----------ILPTIASastifffrqyLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAIL 221
Cdd:COG1176  159 iglvyvylpfmVLPLYAA----------LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL 217
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 25-217 3.84e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 53.06  E-value: 3.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  25 PKRILIFMLFAVIAVILLIPFYTLFVSTFkdgalviaNGMDVSIDTAKMSFKNYIILFtEKNSLFTWFFNSLFLTIVQVV 104
Cdd:PRK09500   1 MGRLLRGGFMTLVYAYLYIPIIILIVNSF--------NSSRFGINWKGFTTKWYELLF-NNDSLLQAAQHSLTMAVFSAT 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 105 CQLFISAFVAYGFAMYDFKGKNFLFICVLFVMMVP-------FEILMLPLYNQISDMHLTNTYIGIILPTIasasTIFFF 177
Cdd:PRK09500  72 FATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPdivmaisLLVLFMLLGIQLGFWSLLFAHITFCLPFV----VVTVY 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 698933615 178 RQyLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAA 217
Cdd:PRK09500 148 SR-LKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 27-221 1.73e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 42.43  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615  27 RILIFMLFAVIAVILLIPFYTLFvstfkdgalviangmdvsIDTAKMSFKNYIILFTEKNSLFTwFFNSLFLTIVQVVCQ 106
Cdd:COG0555   10 GLTLGLTLLYLSLIVLLPLAALV------------------LKAAGLGWAEFWAVLTSPRVLAA-LKLSLGTALIAALIN 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 107 LFISAFVAYGFAMYDFKGKNFLFICVLFVMMVP-----FEILML----PLYNQISDMH---LTNTYIGIILP--TIASAS 172
Cdd:COG0555   71 LVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPtavagIALLLLfgpnGWLGQLLAPLgikVAFTPLGIVLAqtFVSLPF 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 698933615 173 TIFFFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAIL 221
Cdd:COG0555  151 VVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFAL 199
malF PRK10999
maltose ABC transporter permease MalF;
181-267 8.70e-04

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 40.71  E-value: 8.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698933615 181 LSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSWNNLLWPMLVLKDGAKF---TLPIGLNTLLTPYg 257
Cdd:PRK10999 398 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMigtTTPAGYTDLLVSY- 476

                         90
                 ....*....|
gi 698933615 258 nNYNLLFVGS 267
Cdd:PRK10999 477 -TYRIAFEGG 485
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
176-227 4.11e-03

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 38.27  E-value: 4.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 698933615 176 FFRQYLSGIPRDLVEAGRIDGASEYGIFFRLILPIMKPSFAAMAILNAMFSW 227
Cdd:PRK10561 161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAF 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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