|
Name |
Accession |
Description |
Interval |
E-value |
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-255 |
4.42e-152 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 423.68 E-value: 4.42e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHLHVPYNMMHAIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:COG0411 81 IARTFQNPRLFPELTVLENVLVAAHARLGRGLLAALLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|....*
gi 694165643 241 KNNSRVIEAYLGEGA 255
Cdd:COG0411 241 RADPRVIEAYLGEEA 255
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-246 |
4.79e-121 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 344.42 E-value: 4.79e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRT 84
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIARHLHVPYNMMHAIFRlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARAR-----REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNS 244
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELR-ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
..
gi 694165643 245 RV 246
Cdd:cd03219 235 RV 236
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-253 |
1.98e-114 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 328.49 E-value: 1.98e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK11300 2 SQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHLHVPYNMMHAIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
250
....*....|...
gi 694165643 241 KNNSRVIEAYLGE 253
Cdd:PRK11300 242 RNNPDVIKAYLGE 254
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-253 |
8.98e-78 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 235.40 E-value: 8.98e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:COG4674 7 HGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIArhlhvpYNMMHAIFRLgKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:COG4674 87 IGRKFQKPTVFEELTVFENLELA------LKGDRGVFAS-LFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQW 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfnMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4674 160 LEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGK--HSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEV 237
|
250
....*....|...
gi 694165643 241 KNNSRVIEAYLGE 253
Cdd:COG4674 238 QADPRVIEVYLGR 250
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
2-252 |
2.56e-59 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 187.50 E-value: 2.56e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGI 81
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRLFGELSVLENVLIARhlhvpynmmhaifRLGKFYRGEKEMRDEAYELLKImnLAHKAEEKAKNLPYGEQRRL 161
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGA-------------YARRDRAEVRADLERVYELFPR--LKERRRQRAGTLSGGEQQML 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:COG0410 146 AIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELL 224
|
250
....*....|.
gi 694165643 242 NNSRVIEAYLG 252
Cdd:COG0410 225 ADPEVREAYLG 235
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
3-254 |
4.12e-58 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 184.85 E-value: 4.12e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGIT 82
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNIRLFGELSVLENVLiarhlhvpynmmhAIFRLGKFYRgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:COG1137 82 YLPQEASIFRKLTVEDNIL-------------AVLELRKLSK--KEREERLEELLEEFGITHLRKSKAYSLSGGERRRVE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:COG1137 147 IARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKER-GIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILN 225
|
250
....*....|..
gi 694165643 243 NSRVIEAYLGEG 254
Cdd:COG1137 226 NPLVRKVYLGED 237
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-243 |
2.26e-56 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 179.55 E-value: 2.26e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRT 84
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIARHLHVPynmmhaifrlgkfyRGEKEMRDEAYELLKImnLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRR--------------AKRKARLERVYELFPR--LKERRKQLAGTLSGGEQQMLAIA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:cd03224 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR-DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
13-252 |
3.45e-56 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 179.66 E-value: 3.45e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLFG 92
Cdd:cd03218 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIArhlhvpynmmhaifrLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:cd03218 89 KLTVEENILAV---------------LEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEAYLG 252
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-242 |
4.23e-54 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 174.48 E-value: 4.23e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGlKPYQIAAK-GItr 83
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR-DPAEVRRRiGY-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENV-LIARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:COG1131 78 VPQEPALYPDLTVRENLrFFARLYGLP----------------RKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:COG1131 142 LALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
15-249 |
6.82e-54 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 173.67 E-value: 6.82e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GItrTFQNIR--LF 91
Cdd:COG1122 12 GGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKvGL--VFQNPDdqLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 GElSVLENVLIA-RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:COG1122 90 AP-TVEEDVAFGpENLGLP----------------REEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAME 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEA 249
Cdd:COG1122 153 PEVLVLDEPTAGLDPRGRRELLELLKRLN-KEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELLEE 230
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
4-253 |
5.19e-53 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 171.69 E-value: 5.19e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITR 83
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENVLIArhLHVPYNMMHaifrlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMAV--LEIRKDLDR------------AEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEI 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:TIGR04406 147 ARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHLK-ERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVAN 225
|
250
....*....|
gi 694165643 244 SRVIEAYLGE 253
Cdd:TIGR04406 226 EKVRRVYLGE 235
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
3-254 |
4.72e-50 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 164.30 E-value: 4.72e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGIT 82
Cdd:PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNIRLFGELSVLENVLiarhlhvpynmmhAIFRLGKFYRGEKEmRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:PRK10895 82 YLPQEASIFRRLSVYDNLM-------------AVLQIRDDLSAEQR-EDRANELMEEFHIEHLRDSMGQSLSGGERRRVE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
250
....*....|..
gi 694165643 243 NSRVIEAYLGEG 254
Cdd:PRK10895 227 DEHVKRVYLGED 238
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-250 |
7.47e-50 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 163.72 E-value: 7.47e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESiVGLKPYQIA--- 77
Cdd:COG1121 3 MMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKP-PRRARRRIGyvp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 -AKGITRTFQnirlfgeLSVLENVliarhlhvpynMMHAIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYG 156
Cdd:COG1121 82 qRAEVDWDFP-------ITVRDVV-----------LMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVnIAHGT 236
Cdd:COG1121 144 QQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELR-REGKTILVVTHDLGAVREYFDRVLLLNRGL-VAHGP 221
|
250
....*....|....
gi 694165643 237 PEEIKNNSRVIEAY 250
Cdd:COG1121 222 PEEVLTPENLSRAY 235
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-242 |
1.33e-49 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 162.84 E-value: 1.33e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA-- 78
Cdd:COG1127 2 SEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYElr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 79 KGITRTFQNIRLFGELSVLENVLIA--RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHkAEEKaknLPY- 155
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFPlrEHTDLS----------------EAEIRELVLEKLELVGLPG-AADK---MPSe 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 ---GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNI 232
Cdd:COG1127 142 lsgGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKII 221
|
250
....*....|
gi 694165643 233 AHGTPEEIKN 242
Cdd:COG1127 222 AEGTPEELLA 231
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
18-229 |
4.29e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 158.01 E-value: 4.29e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GItrTFQNIR--LFGeL 94
Cdd:cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGL--VFQNPDdqFFG-P 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIA-RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:cd03225 92 TVEEEVAFGlENLGLP----------------EEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-241 |
1.29e-47 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 157.15 E-value: 1.29e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGlKPYQIAAKgITRT 84
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR-IGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLI-ARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:cd03265 79 FQDLSVDDELTGWENLYIhARLYGVP----------------GAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEI 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-240 |
4.11e-46 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 154.43 E-value: 4.11e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgitR 83
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARR---I 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TF--QNIRLFGELSVLENVLIARHlhvPYnmmhaifrLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRL 161
Cdd:COG1120 78 AYvpQEPPAPFGLTVRELVALGRY---PH--------LGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRV 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG1120 147 LIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-240 |
6.86e-46 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 153.49 E-value: 6.86e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLK-AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGI 81
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQlrRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRLFGELSVLENVLIARhlhVPYnmmHAIFR--LGKFYRGEKEmrdEAYELLKIMNLAHKAEEKAKNLPYGEQR 159
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGR---LGR---RSTWRslFGLFPKEEKQ---RALAALERVGLLDKAYQRADQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 160 RLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEE 239
Cdd:cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231
|
.
gi 694165643 240 I 240
Cdd:cd03256 232 L 232
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-252 |
1.36e-45 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 159.03 E-value: 1.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHLHvpynmmhaifRLGKFYRgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLGREPR----------RGGLIDW--RAMRRRARELLARLGLDIDPDTPVGDLSVAQQQL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG1129 149 VEIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
250
....*....|..
gi 694165643 241 kNNSRVIEAYLG 252
Cdd:COG1129 228 -TEDELVRLMVG 238
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
15-245 |
2.13e-45 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 151.96 E-value: 2.13e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQI--AAKGITRTFQNIRLFG 92
Cdd:cd03258 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELrkARRRIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENV-LIARHLHVPynmmhaifrlgKFYRGEKemrdeAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:cd03258 96 SRTVFENVaLPLEIAGVP-----------KAEIEER-----VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSR 245
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
3-240 |
2.74e-45 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 152.13 E-value: 2.74e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISF-GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAkgi 81
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRT-----FQNIRLFGELSVLENVLIARhlhVPYnmmHAIFR--LGKFYrgeKEMRDEAYELLKIMNLAHKAEEKAKNLP 154
Cdd:COG3638 78 LRRrigmiFQQFNLVPRLSVLTNVLAGR---LGR---TSTWRslLGLFP---PEDRERALEALERVGLADKAYQRADQLS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 155 YGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:COG3638 149 GGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFD 228
|
....*.
gi 694165643 235 GTPEEI 240
Cdd:COG3638 229 GPPAEL 234
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
12-242 |
2.99e-45 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 151.50 E-value: 2.99e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 12 ISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP--YQIAAKGITRTFQNIR 89
Cdd:cd03261 8 KSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaeLYRLRRRMGMLFQSGA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 LFGELSVLENVliARHLHvpynmMHaiFRLGkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:cd03261 88 LFDSLTVFENV--AFPLR-----EH--TRLS-----EEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
13-241 |
8.18e-45 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 149.96 E-value: 8.18e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglkpYQIAA--KGITRTFQNIRL 90
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR----TDRKAarQSLGYCPQFDAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGELSVLENVLIarhlhvpYNMMHAIFRlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:cd03263 87 FDELTVREHLRF-------YARLKGLPK--------SEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-235 |
1.83e-44 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 148.84 E-value: 1.83e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 6 QTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvGLKPYQIA----AKGI 81
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL-EKERKRIGyvpqRRSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFqnirlfgELSVLENVLIARHLHvpynmmhaifrLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRL 161
Cdd:cd03235 80 DRDF-------PISVRDVVLMGLYGH-----------KGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRV 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVnIAHG 235
Cdd:cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTV-VASG 213
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-226 |
5.95e-44 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 147.88 E-value: 5.95e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFG----GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQI 76
Cdd:COG1136 1 MSPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSEREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 AAkgITRT-----FQNIRLFGELSVLENVLIARHLHvpynmmhaifrlGkfyRGEKEMRDEAYELLKIMNLAHKAEEKAK 151
Cdd:COG1136 81 AR--LRRRhigfvFQFFNLLPELTALENVALPLLLA------------G---VSRKERRERARELLERVGLGDRLDHRPS 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLvMNICERIYVL 226
Cdd:COG1136 144 QLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPEL-AARADRVIRL 217
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
15-229 |
1.88e-43 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 146.74 E-value: 1.88e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIRLFG 92
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrRRIGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIArhlhvpynmMHAIfrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:COG2884 93 DRTVYENVALP---------LRVT------GKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEIN-RRGTTVLIATHDLELVDRMPKRVLELEDG 213
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-243 |
2.32e-43 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 146.93 E-value: 2.32e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYqiAAKGITRT 84
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE--ARRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIarhlhvpYNMMHAIFRlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:COG4555 80 PDERGLYDRLTVRENIRY-------FAELYGLFD--------EELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:COG4555 145 RALVHDPKVLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-240 |
2.76e-43 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 149.86 E-value: 2.76e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKG 80
Cdd:COG3842 2 AMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK---RN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENV---LiaRHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGE 157
Cdd:COG3842 79 VGMVFQDYALFPHLTVAENVafgL--RMRGVP----------------KAEIRARVAELLELVGLEGLADRYPHQLSGGQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNP--RETT--ELMELIDfirgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIA 233
Cdd:COG3842 141 QQRVALARALAPEPRVLLLDEPLSALDAklREEMreELRRLQR----ELGITFIYVTHDQEEALALADRIAVMNDGRIEQ 216
|
....*..
gi 694165643 234 HGTPEEI 240
Cdd:COG3842 217 VGTPEEI 223
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
17-226 |
1.63e-41 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 141.47 E-value: 1.63e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA---KGITRTFQNIRLFGE 93
Cdd:cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfrrRHIGFVFQSFNLLPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENVLIARHLHvpynmmhaifrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:cd03255 97 LTALENVELPLLLA---------------GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVmNICERIYVL 226
Cdd:cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIEL 213
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
10-235 |
5.39e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 139.96 E-value: 5.39e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 10 LGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIR 89
Cdd:cd03259 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER---RNIGMVFQDYA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 LFGELSVLENVLiarhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:cd03259 83 LFPHLTVAENIA---------------FGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
20-181 |
8.30e-40 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 134.70 E-value: 8.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGlKPYQIAAKGITRTFQNIRLFGELSVLEN 99
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTD-DERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 100 VLIARHLhvpynmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLP----YGEQRRLEIARALATHPSLLL 175
Cdd:pfam00005 80 LRLGLLL---------------KGLSKREKDARAEEALEKLGLGDLADRPVGERPgtlsGGQRQRVAIARALLTKPKLLL 144
|
....*.
gi 694165643 176 LDEPAA 181
Cdd:pfam00005 145 LDEPTA 150
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-243 |
1.65e-39 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 143.12 E-value: 1.65e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISF-----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQI 76
Cdd:COG1123 258 EPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 AAkgITRT----FQNIR--LFGELSVLEnvLIARHLHVpynmmHAIFRlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKa 150
Cdd:COG1123 338 RE--LRRRvqmvFQDPYssLNPRMTVGD--IIAEPLRL-----HGLLS-------RAERRERVAELLERVGLPPDLADR- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 151 knLPY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:COG1123 401 --YPHelsgGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVM 478
|
250
....*....|....*..
gi 694165643 227 DYGVNIAHGTPEEIKNN 243
Cdd:COG1123 479 YDGRIVEDGPTEEVFAN 495
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
18-250 |
5.25e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 136.81 E-value: 5.25e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIaaKGITRT----FQN--IRLF 91
Cdd:TIGR04521 19 KALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKL--KDLRKKvglvFQFpeHQLF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 gELSVLENVLIArhlhvPYNMMHAifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIARALATH 170
Cdd:TIGR04521 97 -EETVYKDIAFG-----PKNLGLS----------EEEAEERVKEALELVGLDEEYLERSPfELSGGQMRRVAIAGVLAME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEAY 250
Cdd:TIGR04521 161 PEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVDELEKI 240
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
5-241 |
1.07e-38 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 134.57 E-value: 1.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRT 84
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIArhlhvpynmmhaifrLGKFYRGEKEMRDEAYEL---LKIMnlahkAEEKAKNLPYGEQRRL 161
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTG---------------LAALPRRSRKIPDEIYELfpvLKEM-----LGRRGGDLSGGQQQQL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
15-240 |
1.33e-38 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 137.13 E-value: 1.33e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIRLFG 92
Cdd:COG1135 16 GPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAarRKIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIA-RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:COG1135 96 SRTVAENVALPlEIAGVP----------------KAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG1135 160 KVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDV 228
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-229 |
2.75e-38 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 133.40 E-value: 2.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQ--IA 77
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLrkIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKGITRTFQNIrlfgeLSVLENVL-IARHLhvpynmMHAIFRLGKfYRGEKEMRDEAYELLKIMNLahkAEEKAKNLPY- 155
Cdd:cd03257 81 RKEIQMVFQDP-----MSSLNPRMtIGEQI------AEPLRIHGK-LSKKEARKEAVLLLLVGVGL---PEEVLNRYPHe 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 156 ---GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03257 146 lsgGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-239 |
6.30e-38 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 138.62 E-value: 6.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHslGIS--FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIA- 77
Cdd:COG3845 2 MPPALELR--GITkrFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDG------KPVRIRs 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 -----AKGITRTFQNIRLFGELSVLENVLIARHlhvpynmmhaifRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKN 152
Cdd:COG3845 74 prdaiALGIGMVHQHFMLVPNLTVAENIVLGLE------------PTKGGRLDRKAARARIRELSERYGLDVDPDAKVED 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 153 LPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIR--GKfnmTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:COG3845 142 LSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRLAaeGK---SIIFITHKLREVMAIADRVTVLRRGK 218
|
....*....
gi 694165643 231 NIAHGTPEE 239
Cdd:COG3845 219 VVGTVDTAE 227
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-229 |
8.18e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.60 E-value: 8.18e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglKPYQIAAKGITRT 84
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK--KEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVliarhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekakNLPYGEQRRLEIA 164
Cdd:cd03230 79 PEEPSLYENLTVRENL---------------------------------------------------KLSGGMKQRLALA 107
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNG 171
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
13-243 |
1.12e-37 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 131.98 E-value: 1.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFG 92
Cdd:cd03300 9 FYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK---RPVNTVFQNYALFP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVliarhlhvpynmmhaIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:cd03300 86 HLTVFENI---------------AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-245 |
2.06e-37 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 131.27 E-value: 2.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTV---FNLLTgiyLPTTGDIIFKGESIvGLKPYQIAAkg 80
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLlrcINLLE---EPDSGTITVDGEDL-TDSKKDINK-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 iTRT-----FQNIRLFGELSVLENVLIA--RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNL 153
Cdd:COG1126 75 -LRRkvgmvFQQFNLFPHLTVLENVTLApiKVKKMS----------------KAEAEERAMELLERVGLADKADAYPAQL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 154 PYGEQRRLEIARALATHPSLLLLDEPAAGMNPrettEL-MELIDFIRG--KFNMTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:COG1126 138 SGGQQQRVAIARALAMEPKVMLFDEPTSALDP----ELvGEVLDVMRDlaKEGMTMVVVTHEMGFAREVADRVVFMDGGR 213
|
250
....*....|....*
gi 694165643 231 NIAHGTPEEIKNNSR 245
Cdd:COG1126 214 IVEEGPPEEFFENPQ 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-249 |
2.32e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 137.34 E-value: 2.32e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF--GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGiYLP----TTGDIIFKGESIVGLKPy 74
Cdd:COG1123 1 MTPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMG-LLPhggrISGEVLLDGRDLLELSE- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 75 QIAAKGITRTFQNIrlfgeLSVLENVLIARHLhvpynmmhaIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLP 154
Cdd:COG1123 79 ALRGRRIGMVFQDP-----MTQLNPVTVGDQI---------AEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 155 YGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:COG1123 145 GGQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVED 224
|
250
....*....|....*
gi 694165643 235 GTPEEIKNNSRVIEA 249
Cdd:COG1123 225 GPPEEILAAPQALAA 239
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
15-243 |
4.02e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 130.88 E-value: 4.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGEL 94
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK-IGYVIQQIGLFPHM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENV-LIARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNL--AHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:cd03295 91 TVEENIaLVPKLLKWP----------------KEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
4-229 |
5.57e-37 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 129.68 E-value: 5.57e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF-GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KG 80
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLlrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIArhLHVPYnmmhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENVALP--LEVRG-------------KKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDfirgKFN---MTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK----RLNkrgTTVIVATHDLSLVDRVAHRVIILDDG 213
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
14-243 |
5.61e-37 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 130.54 E-value: 5.61e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFGE 93
Cdd:cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---RNVGFVFQHYALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENVliARHLHVpynmmhaifRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:cd03296 89 MTVFDNV--AFGLRV---------KPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-226 |
1.27e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 129.82 E-value: 1.27e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqi 76
Cdd:COG1116 4 AAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGP--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 aakgitRT---FQNIRLFGELSVLENVLIA-RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKN 152
Cdd:COG1116 81 ------DRgvvFQEPALLPWLTVLDNVALGlELRGVP----------------KAERRERARELLELVGLAGFEDAYPHQ 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 153 LPYGEQRRLEIARALATHPSLLLLDEPAAGMNPReTTELM--ELIDfIRGKFNMTILLIEHDMH--LVMniCERIYVL 226
Cdd:COG1116 139 LSGGMRQRVAIARALANDPEVLLMDEPFGALDAL-TRERLqdELLR-LWQETGKTVLFVTHDVDeaVFL--ADRVVVL 212
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-226 |
1.45e-35 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 126.05 E-value: 1.45e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGG----LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiaakG 80
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP------D 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIarhlhvPYNMMHaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNVAL------GLELQG---------VPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-235 |
2.31e-35 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 125.41 E-value: 2.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKGITRT 84
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE---ALRRIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIarhlhvpynmmhaifrLGKFYRGEKEmrdEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03268 78 IEAPGFYPNLTARENLRL----------------LARLLGIRKK---RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-250 |
2.46e-35 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 126.35 E-value: 2.46e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDII------FKGESIVGLKPyQI 76
Cdd:COG1119 2 PLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVrlfgerRGGEDVWELRK-RI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 aakGITRTFQNIRLFGELSVLENVL------IARHLHVpynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKA 150
Cdd:COG1119 81 ---GLVSPALQLRFPRDETVLDVVLsgffdsIGLYREP-----------------TDEQRERARELLELLGLAHLADRPF 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 151 KNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:COG1119 141 GTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
250 260
....*....|....*....|
gi 694165643 231 NIAHGTPEEIKNNSRVIEAY 250
Cdd:COG1119 221 VVAAGPKEEVLTSENLSEAF 240
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-240 |
4.25e-35 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 124.99 E-value: 4.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTGIY--LPTTGDIIFKGESIVGLKPYQIAA- 78
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTllrLLNRLNDLIpgAPDEGEVLLDGKDIYDLDVDVLELr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 79 KGITRTFQNIRLFgELSVLENVLIARHLHvpynmmhaifrlGkfYRGEKEMRDEAYELLKIMNLAHKAEEK--AKNLPYG 156
Cdd:cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLH------------G--IKLKEELDERVEEALRKAALWDEVKDRlhALGLSGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfnMTILLIEHDMHLVMNICERIYVLDYGVNIAHGT 236
Cdd:cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
....
gi 694165643 237 PEEI 240
Cdd:cd03260 224 TEQI 227
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-240 |
5.33e-35 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 125.14 E-value: 5.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKaVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRT 84
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENvlIArhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03299 77 PQNYALFPHMTVYKN--IA-------------YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-235 |
7.04e-35 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 122.93 E-value: 7.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 6 QTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgitrtf 85
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 qnirlfgeLSVLENVLiarhlhvpynmmhaifrlgkfyrgekemrdeayellKIMNLAHKAEEKAKNLPYGEQRRLEIAR 165
Cdd:cd03214 75 --------IAYVPQAL------------------------------------ELLGLAHLADRPFNELSGGERQRVLLAR 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 166 ALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
15-229 |
8.03e-35 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 124.06 E-value: 8.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIA--AKGITRTFQNIRLFG 92
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPylRRKIGVVFQDFRLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIArhlhvpynmMHAIfrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:cd03292 92 DRNVYENVAFA---------LEVT------GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKIN-KAGTTVVVATHAKELVDTTRHRVIALERG 212
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
7-245 |
1.16e-34 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 124.53 E-value: 1.16e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 7 THSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkpYQIAAKGITRT-- 84
Cdd:COG1124 8 SVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV-----TRRRRKAFRRRvq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 --FQNirlfgelsvlenvliarhlhvPYNMMHAIFRLGKFYR------GEKEMRDEAYELLKIMNLAhkaEEKAKNLPY- 155
Cdd:COG1124 83 mvFQD---------------------PYASLHPRHTVDRILAeplrihGLPDREERIAELLEQVGLP---PSFLDRYPHq 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 ---GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNI 232
Cdd:COG1124 139 lsgGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIV 218
|
250
....*....|...
gi 694165643 233 AHGTPEEIKNNSR 245
Cdd:COG1124 219 EELTVADLLAGPK 231
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
15-243 |
1.39e-34 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 127.28 E-value: 1.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA---KGITRTFQNIRLF 91
Cdd:TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREvrrKKIGMVFQQFALF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 GELSVLENV-LIARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:TIGR01186 84 PHMTILQNTsLGPELLGWP----------------EQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAE 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:TIGR01186 148 PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
5-229 |
1.46e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 122.30 E-value: 1.46e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGL-KPYQIAAKGITR 83
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLeDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENVLIArhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknLPYGEQRRLEI 163
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG-------------------------------------------------LSGGQQQRVAL 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-246 |
2.08e-34 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 129.13 E-value: 2.08e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK09700 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHLHVPYnmmhaifrLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKV--------CGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
....*.
gi 694165643 241 KNNSRV 246
Cdd:PRK09700 233 SNDDIV 238
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
13-240 |
1.36e-33 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 124.10 E-value: 1.36e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI----------VGLkpyqiaakgit 82
Cdd:COG1118 11 RFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLftnlpprerrVGF----------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 rTFQNIRLFGELSVLENvlIArhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:COG1118 80 -VFQHYALFPHMTVAEN--IA-------------FGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNP--RET--TELMELIDfirgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPE 238
Cdd:COG1118 144 LARALAVEPEVLLLDEPFGALDAkvRKElrRWLRRLHD----ELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPD 219
|
..
gi 694165643 239 EI 240
Cdd:COG1118 220 EV 221
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
13-230 |
1.75e-33 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 120.71 E-value: 1.75e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvGLKPYQIAA--KGITRTFQNIRL 90
Cdd:cd03262 9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL-TDDKKNINElrQKVGMVFQQFNL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGELSVLENVLIArhlhvpynmmhAIFRLGkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:cd03262 88 FPHLTVLENITLA-----------PIKVKG---MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIrGKFNMTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
19-235 |
2.70e-33 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 120.90 E-value: 2.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifkgeSIVGLKPY--QIA-AKGITRTF-QNIRLFGEL 94
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV-----RVAGLVPWkrRKKfLRRIGVVFgQKTQLWWDL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENvliarhlhvpYNMMHAIFRLGKFYRgeKEMRDEAYELLKIMNLAHKaeeKAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:cd03267 111 PVIDS----------FYLLAAIYDLPPARF--KKRLDELSELLDLEELLDT---PVRQLSLGQRMRAEIAAALLHEPEIL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 175 LLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-252 |
4.11e-33 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 123.79 E-value: 4.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITR 83
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ---RPINM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENVliarhlhvpynmmhaIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK11607 96 MFQSYALFPHMTVEQNI---------------AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 164 ARALATHPSLLLLDEPAAGMNP--RETTELmELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:PRK11607 161 ARSLAKRPKLLLLDEPMGALDKklRDRMQL-EVVDILE-RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238
|
250
....*....|...
gi 694165643 242 N--NSRVIEAYLG 252
Cdd:PRK11607 239 EhpTTRYSAEFIG 251
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
3-195 |
4.16e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 119.51 E-value: 4.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvgLKPYQIAAKGIT 82
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPI--RDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNIRLFGELSVLENVLIARHLHvpynmmhaifrlgkfyrGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALY-----------------GLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVA 141
|
170 180 190
....*....|....*....|....*....|...
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELI 195
Cdd:COG4133 142 LARLLLSPAPLWLLDEPFTALDAAGVALLAELI 174
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-250 |
6.44e-33 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 121.45 E-value: 6.44e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNirLFGELSVLENVLI-ARHlhvpynmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQR 159
Cdd:PRK13537 84 VVPQFDN--LDPDFTVRENLLVfGRY----------------FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 160 RLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHGTP 237
Cdd:PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLlaRGK---TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAP 222
|
250
....*....|....*.
gi 694165643 238 EEIKNNS---RVIEAY 250
Cdd:PRK13537 223 HALIESEigcDVIEIY 238
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-242 |
1.03e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 120.60 E-value: 1.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkpyqiaakgitr 83
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGEL----------SVLEnvliarhlhvpynmmHAIFrLGKFyRG--EKEMRDEAYELLKIMNLAHKAEEKAK 151
Cdd:COG4152 66 DPEDRRRIGYLpeerglypkmKVGE---------------QLVY-LARL-KGlsKAEAKRRADEWLERLGLGDRANKKVE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNP--RET--TELMELIDfiRGKfnmTILLIEHDMHLVMNICERIYVLD 227
Cdd:COG4152 129 ELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPvnVELlkDVIRELAA--KGT---TVIFSSHQMELVEELCDRIVIIN 203
|
250
....*....|....*
gi 694165643 228 YGVNIAHGTPEEIKN 242
Cdd:COG4152 204 KGRKVLSGSVDEIRR 218
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
11-240 |
2.06e-32 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 124.95 E-value: 2.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFG----GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPY----QIAAkgit 82
Cdd:COG2274 478 NVSFRypgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPAslrrQIGV---- 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 rTFQNIRLFGElSVLENVLIARHlHVPYnmmhaifrlgkfyrgekemrDEAYELLKIMNLAHKAE-----------EKAK 151
Cdd:COG2274 554 -VLQDVFLFSG-TIRENITLGDP-DATD--------------------EEIIEAARLAGLHDFIEalpmgydtvvgEGGS 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNiCERIYVLDYGVN 231
Cdd:COG2274 611 NLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRI 687
|
....*....
gi 694165643 232 IAHGTPEEI 240
Cdd:COG2274 688 VEDGTHEEL 696
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-233 |
2.74e-32 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 123.12 E-value: 2.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTT--GDIIFKGESivgLKPYQIA- 77
Cdd:PRK13549 2 MEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTyeGEIIFEGEE---LQASNIRd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 --AKGITRTFQNIRLFGELSVLENVL----IARHLHVPYNMMHAifrlgkfyrgekemrdEAYELLKIMNLAHKAEEKAK 151
Cdd:PRK13549 79 teRAGIAIIHQELALVKELSVLENIFlgneITPGGIMDYDAMYL----------------RAQKLLAQLKLDINPATPVG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVN 231
Cdd:PRK13549 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRH 221
|
..
gi 694165643 232 IA 233
Cdd:PRK13549 222 IG 223
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-229 |
3.46e-32 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 115.42 E-value: 3.46e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 8 HSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvGLKPYQIAAKGITRTFQn 87
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEELRRRIGYVPQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 irlfgeLSvlenvliarhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknlpYGEQRRLEIARAL 167
Cdd:cd00267 81 ------LS-----------------------------------------------------------GGQRQRVALARAL 95
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
13-253 |
6.59e-32 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 119.55 E-value: 6.59e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLfg 92
Cdd:PRK13536 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL-- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIarhlhvpynmmhaifrLGKFYR-GEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:PRK13536 128 EFTVRENLLV----------------FGRYFGmSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELID--FIRGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNS---RV 246
Cdd:PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRslLARGK---TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHigcQV 268
|
....*..
gi 694165643 247 IEAYLGE 253
Cdd:PRK13536 269 IEIYGGD 275
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
13-234 |
6.84e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 114.83 E-value: 6.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQnirlfg 92
Cdd:cd03216 9 RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 elsvlenvliarhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknLPYGEQRRLEIARALATHPS 172
Cdd:cd03216 83 ------------------------------------------------------------LSVGERQMVEIARALARNAR 102
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
18-229 |
7.36e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 117.49 E-value: 7.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRL--FGELS 95
Cdd:COG1101 20 RALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY-IGRVFQDPMMgtAPSMT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVLIARHLHVPYNmmhaiFRLGKfyrgEKEMRDEAYELLKI--MNLAHKAEEKAKNLPyGEQRRleiarALA----- 168
Cdd:COG1101 99 IEENLALAYRRGKRRG-----LRRGL----TKKRRELFRELLATlgLGLENRLDTKVGLLS-GGQRQ-----ALSllmat 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 169 -THPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHlvmniceriYVLDYG 229
Cdd:COG1101 164 lTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNME---------QALDYG 216
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-235 |
8.92e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 115.84 E-value: 8.92e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIAAKgitrt 84
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG------KPLDIAAR----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 fqniRLFGELSvlENvliaRHLHVPYNMMHAIFRLGKFY-RGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:cd03269 70 ----NRIGYLP--EE----RGLYPKMKVIDQLVYLAQLKgLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQF 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-240 |
2.44e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 116.87 E-value: 2.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFG-GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIAAKGIT 82
Cdd:PRK13636 5 ILKVEELNYNYSdGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG------KPIDYSRKGLM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNI---------RLFGElSVLENVLI-ARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKN 152
Cdd:PRK13636 79 KLRESVgmvfqdpdnQLFSA-SVYQDVSFgAVNLKLP----------------EDEVRKRVDNALKRTGIEHLKDKPTHC 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 153 LPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNI 232
Cdd:PRK13636 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
....*...
gi 694165643 233 AHGTPEEI 240
Cdd:PRK13636 222 LQGNPKEV 229
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-252 |
2.61e-31 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 115.75 E-value: 2.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK11614 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLiarhlhvpynmmhaifrLGKFY--RGEKEMRDE-AYELLKimNLAHKAEEKAKNLPYGE 157
Cdd:PRK11614 82 VAIVPEGRRVFSRMTVEENLA-----------------MGGFFaeRDQFQERIKwVYELFP--RLHERRIQRAGTMSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTP 237
Cdd:PRK11614 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTG 221
|
250
....*....|....*
gi 694165643 238 EEIKNNSRVIEAYLG 252
Cdd:PRK11614 222 DALLANEAVRSAYLG 236
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-250 |
5.85e-31 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 115.21 E-value: 5.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GITR 83
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRrAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 tfQNIRL-FGeLSVLENVLIARHLHvpynmmhaifrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:COG4559 82 --QHSSLaFP-FTVEEVVALGRAPH---------------GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALA-------THPSLLLLDEPAAGMNPRETTELMELI-DFIRGkfNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:COG4559 144 LARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLArQLARR--GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQ 221
|
250
....*....|....*.
gi 694165643 235 GTPEEIKNNSRVIEAY 250
Cdd:COG4559 222 GTPEEVLTDELLERVY 237
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
11-244 |
7.19e-31 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 115.25 E-value: 7.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISF--GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQI--AAKGITRTFQ 86
Cdd:PRK11831 12 GVSFtrGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLytVRKRMSMLFQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGELSVLENVL--IARHLHVPYNMMHAIFRlgkfyrgekeMRDEAyellkiMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:PRK11831 92 SGALFTDMNVFDNVAypLREHTQLPAPLLHSTVM----------MKLEA------VGLRGAAKLMPSELSGGMARRAALA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNS 244
Cdd:PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-243 |
8.80e-31 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 116.71 E-value: 8.80e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAIlQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKG 80
Cdd:COG3839 1 MASL-ELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPP---KDRN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENvlIARHLhvpynmmhaifRLGKFYRgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:COG3839 77 IAMVFQSYALYPHMTVYEN--IAFPL-----------KLRKVPK--AEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNP--RETTElMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPE 238
Cdd:COG3839 142 VALGRALVREPKVFLLDEPLSNLDAklRVEMR-AEIKRLHR-RLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTPE 219
|
....*
gi 694165643 239 EIKNN 243
Cdd:COG3839 220 ELYDR 224
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-240 |
1.50e-30 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 116.59 E-value: 1.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITR 83
Cdd:PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN---RHVNT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENVLIArhlhvpynmmhaiFRLGKfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK09452 91 VFQSYALFPHMTVFENVAFG-------------LRMQK--TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTEL-MELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMqNELKALQR-KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
13-230 |
2.07e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 112.73 E-value: 2.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFG 92
Cdd:cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD---RDIAMVFQNYALYP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENvlIARHLhvpynmmhaifRLGKFYRGEKEMR-DEAYELLKIMNLAHKaeeKAKNLPYGEQRRLEIARALATHP 171
Cdd:cd03301 86 HMTVYDN--IAFGL-----------KLRKVPKDEIDERvREVAELLQIEHLLDR---KPKQLSGGQRQRVALGRAIVREP 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:cd03301 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-252 |
2.48e-30 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 117.80 E-value: 2.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK10762 1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHlhvPYNMMHAIfrlgkfyrGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK10762 81 IGIIHQELNLIPQLTIAENIFLGRE---FVNRFGRI--------DWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228
|
250
....*....|..
gi 694165643 241 KNNsRVIEAYLG 252
Cdd:PRK10762 229 TED-SLIEMMVG 239
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-229 |
3.15e-30 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 112.53 E-value: 3.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISFGG----LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIA 77
Cdd:COG4181 6 APIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 ---AKGITRTFQNIRLFGELSVLENVLIARHLhvpynmmhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLP 154
Cdd:COG4181 86 rlrARHVGFVFQSFQLLPTLTALENVMLPLEL-----------------AGRRDARARARALLERVGLGHRLDHYPAQLS 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 155 YGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYG 229
Cdd:COG4181 149 GGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAG 222
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
24-253 |
6.00e-30 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 111.77 E-value: 6.00e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 24 NLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFGELSVLENVLIA 103
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE---RPVSMLFQENNLFPHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 104 rhlhvpynmMHAIFRLGkfyRGEKEMRDEAyelLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGM 183
Cdd:COG3840 96 ---------LRPGLKLT---AEQRAQVEQA---LERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 184 NPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI--KNNSRVIEAYLGE 253
Cdd:COG3840 161 DPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALldGEPPPALAAYLGI 232
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-248 |
6.98e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 112.86 E-value: 6.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF-GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK--- 79
Cdd:PRK13639 1 ILETRDLKYSYpDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRktv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 80 GItrTFQNI--RLFGElSVLENVLIArhlhvPYNMmhaifrlgKFYRGEKEMRDEayELLKIMNLAHKAEEKAKNLPYGE 157
Cdd:PRK13639 81 GI--VFQNPddQLFAP-TVEEDVAFG-----PLNL--------GLSKEEVEKRVK--EALKAVGMEGFENKPPHHLSGGQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIdFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTP 237
Cdd:PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
|
250
....*....|.
gi 694165643 238 EEIKNNSRVIE 248
Cdd:PRK13639 222 KEVFSDIETIR 232
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
19-243 |
9.69e-30 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 112.35 E-value: 9.69e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP---YQIAAKGITRTFQNIRLFGELS 95
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRkelRELRRKKISMVFQSFALLPHRT 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVliarhlhvpynmmhaIFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:cd03294 119 VLENV---------------AFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 176 LDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-229 |
1.30e-29 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 115.93 E-value: 1.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 7 THSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIF-KGESIVGLKpyqiaakgitrtf 85
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIpKGLRIGYLP------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 QNIRLFGELSVLENVLIA-RHLHVPYNMMHAIFRLGKFYRGEKEMRDEAYELLKIMN---LAHKAEE------------- 148
Cdd:COG0488 68 QEPPLDDDLTVLDTVLDGdAELRALEAELEELEAKLAEPDEDLERLAELQEEFEALGgweAEARAEEilsglgfpeedld 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 149 -KAKNLPYGEQRRLEIARALATHPSLLLLDEP-----AagmnprETTELMEliDFIRgKFNMTILLIEHDMHLVMNICER 222
Cdd:COG0488 148 rPVSELSGGWRRRVALARALLSEPDLLLLDEPtnhldL------ESIEWLE--EFLK-NYPGTVLVVSHDRYFLDRVATR 218
|
....*..
gi 694165643 223 IYVLDYG 229
Cdd:COG0488 219 ILELDRG 225
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
11-239 |
2.09e-29 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 115.63 E-value: 2.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFG----GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQ 86
Cdd:COG4987 338 DVSFRypgaGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR-IAVVPQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGElSVLENVLIARhlhvPY----NMMHAIFR--LGKFYRGEKEmrdeayellkimNLAHKAEEKAKNLPYGEQRR 160
Cdd:COG4987 417 RPHLFDT-TLRENLRLAR----PDatdeELWAALERvgLGDWLAALPD------------GLDTWLGEGGRRLSGGERRR 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELI-DFIRGKfnmTILLIEHDMHLvMNICERIYVLDYGVNIAHGTPEE 239
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLlEALAGR---TVLLITHRLAG-LERMDRILVLEDGRIVEQGTHEE 555
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
18-248 |
8.86e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 110.14 E-value: 8.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIV--GLKPYQIAAK-GITRTFQNIRLFGEl 94
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkKVKLSDIRKKvGLVFQYPEYQLFEE- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIArhlhvPYNmmhaifrLGkfyRGEKEMRDEAYELLKIMNLAHkaEEKAKNLPY----GEQRRLEIARALATH 170
Cdd:PRK13637 100 TIEKDIAFG-----PIN-------LG---LSEEEIENRVKRAMNIVGLDY--EDYKDKSPFelsgGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIE 248
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLE 240
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-245 |
1.28e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 110.53 E-value: 1.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLP---TTGDIIFKGESIVGLKP--- 73
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEkel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 74 YQIAAKGITRTFQNirlfgelsvlenvliarhlhvPYNMMHAIFRLGK---------FYRGEKEMRDEAYELLKIMNLAH 144
Cdd:COG0444 81 RKIRGREIQMIFQD---------------------PMTSLNPVMTVGDqiaeplrihGGLSKAEARERAIELLERVGLPD 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 145 kAEEKAKNLPY----GEQRRLEIARALATHPSLLLLDEPaagmnpreTTEL--------MELIDFIRGKFNMTILLIEHD 212
Cdd:COG0444 140 -PERRLDRYPHelsgGMRQRVMIARALALEPKLLIADEP--------TTALdvtiqaqiLNLLKDLQRELGLAILFITHD 210
|
250 260 270
....*....|....*....|....*....|....
gi 694165643 213 MHLVMNICERIYVLdYGVNIA-HGTPEEIKNNSR 245
Cdd:COG0444 211 LGVVAEIADRVAVM-YAGRIVeEGPVEELFENPR 243
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-233 |
1.31e-28 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 113.00 E-value: 1.31e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTT--GDIIFKGESIVGLKPYQIAAKGI 81
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwdGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRLFGELSVLENVLIARHLHVPYNMMHaifrlgkfyrgEKEMRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRR 160
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMA-----------YNAMYLRAKNLLRELQLdADNVTRPVGDYGGGQQQL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIA 233
Cdd:TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVA 221
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
18-255 |
1.41e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 110.18 E-value: 1.41e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifkgeSIVGLKPY--QIA-AKGITRTF-QNIRLFGE 93
Cdd:COG4586 36 EAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEV-----RVLGYVPFkrRKEfARRIGVVFgQRSQLWWD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENvliarhlhvpYNMMHAIFRLgkfyrGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:COG4586 111 LPAIDS----------FRLLKAIYRI-----PDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKI 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN---NSRVIEAY 250
Cdd:COG4586 176 LFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKErfgPYKTIVLE 255
|
....*
gi 694165643 251 LGEGA 255
Cdd:COG4586 256 LAEPV 260
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
22-229 |
1.60e-28 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 107.77 E-value: 1.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEgDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKG------ESIVGLKPYQiaaKGITRTFQNIRLFGELS 95
Cdd:cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsRKKINLPPQQ---RKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVLIARHLHVPynmmhaifrlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:cd03297 92 VRENLAFGLKRKRN-----------------REDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 694165643 176 LDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
11-229 |
3.15e-28 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 105.54 E-value: 3.15e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQ 86
Cdd:cd03228 5 NVSFsypgRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IAYVPQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGElSVLENVLIArhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknlpyGEQRRLEIARA 166
Cdd:cd03228 84 DPFLFSG-TIRENILSG----------------------------------------------------GQRQRIAIARA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNiCERIYVLDYG 229
Cdd:cd03228 111 LLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDG 170
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
15-243 |
3.60e-28 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 109.02 E-value: 3.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP--------YQIaakgitrtfQ 86
Cdd:COG1125 13 DGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLDPvelrrrigYVI---------Q 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGELSVLENVLIarhlhVPynmmhaifRLGKFyrGEKEMRDEAYELLKIMNLAhkAEEKAKNLPY----GEQRRLE 162
Cdd:COG1125 84 QIGLFPHMTVAENIAT-----VP--------RLLGW--DKERIRARVDELLELVGLD--PEEYRDRYPHelsgGQQQRVG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNP--RET--TELMELidfiRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPE 238
Cdd:COG1125 147 VARALAADPPILLMDEPFGALDPitREQlqDELLRL----QRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPE 222
|
....*
gi 694165643 239 EIKNN 243
Cdd:COG1125 223 EILAN 227
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-243 |
4.84e-28 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 107.79 E-value: 4.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIylpTTGDIIfkGESIVGLKPYQIAAKG 80
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL---ITGDKS--AGSHIELLGRTVQREG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 -----ITRT-------FQNIRLFGELSVLENVLIARHLHVPYnmMHAIFRLgkFYRGEKEmrdEAYELLKIMNLAHKAEE 148
Cdd:PRK09984 76 rlardIRKSrantgyiFQQFNLVNRLSVLENVLIGALGSTPF--WRTCFSW--FTREQKQ---RALQALTRVGMVHFAHQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 149 KAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDY 228
Cdd:PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228
|
250
....*....|....*
gi 694165643 229 GVNIAHGTPEEIKNN 243
Cdd:PRK09984 229 GHVFYDGSSQQFDNE 243
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
13-253 |
6.81e-28 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 109.02 E-value: 6.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFG 92
Cdd:PRK10851 11 SFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD---RKVGFVFQHYALFR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVliarhlhvpynmmhaIFRLGKFYRGEK----EMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALA 168
Cdd:PRK10851 88 HMTVFDNI---------------AFGLTVLPRRERpnaaAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 169 THPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGvNIAH-GTPEEI--KNNSR 245
Cdd:PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG-NIEQaGTPDQVwrEPATR 231
|
....*...
gi 694165643 246 VIEAYLGE 253
Cdd:PRK10851 232 FVLEFMGE 239
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
15-239 |
9.85e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 111.00 E-value: 9.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFgEL 94
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ-IAWVPQNPYLF-AG 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHLHVPYNMMHAIFRLGkfyrgekemrdeAYELLKIMN--LAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:COG4988 426 TIRENLRLGRPDASDEELEAALEAAG------------LDEFVAALPdgLDTPLGEGGRGLSGGQAQRLALARALLRDAP 493
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 173 LLLLDEPAAGMNPRETTELMELI-DFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEE 239
Cdd:COG4988 494 LLLLDEPTAHLDAETEAEILQALrRLAKGR---TVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEE 557
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
3-212 |
1.40e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 106.48 E-value: 1.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLK----AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGlkPyqiaa 78
Cdd:COG4525 2 SMLTVRHVSVRYPGGGqpqpALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG--P----- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 79 kGITR--TFQNIRLFGELSVLENVLIArhlhvpynmmhaiFRLGKfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYG 156
Cdd:COG4525 75 -GADRgvVFQKDALLPWLNVLDNVAFG-------------LRLRG--VPKAERRARAEELLALVGLADFARRRIWQLSGG 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNP--RETteLMELIDFIRGKFNMTILLIEHD 212
Cdd:COG4525 139 MRQRVGIARALAADPRFLLMDEPFGALDAltREQ--MQELLLDVWQRTGKGVFLITHS 194
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
13-244 |
2.68e-27 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 105.17 E-value: 2.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVF---NLLTGIylpTTGDIIFKGESIVGLKpyqIAAKGITR----TF 85
Cdd:PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLrciNKLEEI---TSGDLIVDGLKVNDPK---VDERLIRQeagmVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 QNIRLFGELSVLENVLIARhLHVpynmmhaifrlgkfyRG--EKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK09493 84 QQFYLFPHLTALENVMFGP-LRV---------------RGasKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIrGKFNMTILLIEHDMHLVMNICERIYVLDYGvNIAH-GTPEEIKN 242
Cdd:PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFIDKG-RIAEdGDPQVLIK 225
|
..
gi 694165643 243 NS 244
Cdd:PRK09493 226 NP 227
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
15-240 |
3.29e-27 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 107.19 E-value: 3.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIRLFG 92
Cdd:PRK11153 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKarRQIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIArhlhvpynmmhaiFRLGKFYRGEKEMRDEayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:PRK11153 96 SRTVFDNVALP-------------LELAGTPKAEIKARVT--ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
18-240 |
3.46e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 105.87 E-value: 3.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVG------LKPyqIAAK-GITRTFQNIRL 90
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAgkknkkLKP--LRKKvGIVFQFPEHQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGElSVLENVLIArhlhvPYNmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIARALAT 169
Cdd:PRK13634 99 FEE-TVEKDICFG-----PMN----------FGVSEEDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVAIAGVLAM 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-234 |
4.82e-27 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 108.46 E-value: 4.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLIARHLHvpynmmhaifRLGKFYRgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPH----------KGGIVNR--RLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-229 |
8.30e-27 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 103.04 E-value: 8.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGdLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKpyqiaaKGITRT 84
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP------QKLRRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 F----QNIRLFGELSVLENVliaRHLHVPYNMMHaifrlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:cd03264 74 IgylpQEFGVYPNFTVREFL---DYIAWLKGIPS------------KEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRR 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIrGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL-GE-DRIVILSTHIVEDVESLCNQVAVLNKG 205
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-251 |
8.38e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 104.82 E-value: 8.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF-GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK 79
Cdd:PRK13647 1 MDNIIEVEDLHFRYkDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 80 gITRTFQNI--RLFGElSVLENVLIArhlhvPYNMmhaifRLGKfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGE 157
Cdd:PRK13647 81 -VGLVFQDPddQVFSS-TVWDDVAFG-----PVNM-----GLDK-----DEVERRVEEALKAVRMWDFRDKPPYHLSYGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLhnQGK---TVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
250
....*....|....*.
gi 694165643 236 TPEEIKNNSRVIEAYL 251
Cdd:PRK13647 221 DKSLLTDEDIVEQAGL 236
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
19-248 |
1.46e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 103.92 E-value: 1.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GITrtFQNI-RLFGELSV 96
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKiGII--FQNPdNQFIGATV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 -------LENVLIARhlhvpynmmhaifrlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:PRK13632 102 eddiafgLENKKVPP----------------------KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEIKNNSRVIE 248
Cdd:PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNKEILE 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
18-253 |
2.17e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 103.76 E-value: 2.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI---VGLKPYQIAAKGITRTFQnirlFGEL 94
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpeTGNKNLKKLRKKVSLVFQ----FPEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHLHVPYNmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIARALATHPSL 173
Cdd:PRK13641 97 QLFENTVLKDVEFGPKN----------FGFSEDEAKEKALKWLKKVGLSEDLISKSPfELSGGQMRRVAIAGVMAYEPEI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 174 LLLDEPAAGMNPRETTELMEL-IDFIRGkfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEA-YL 251
Cdd:PRK13641 167 LCLDEPAAGLDPEGRKEMMQLfKDYQKA--GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWLKKhYL 244
|
..
gi 694165643 252 GE 253
Cdd:PRK13641 245 DE 246
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-240 |
6.11e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 104.03 E-value: 6.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGEsivglkPYQIAAKGITR---------TFQNIRLFG 92
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE------VLQDSARGIFLpphrrrigyVFQEARLFP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIARHlHVPYNMMHAIFrlgkfyrgekemrDEAYELLKImnlAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:COG4148 91 HLSVRGNLLYGRK-RAPRAERRISF-------------DEVVELLGI---GHLLDRRPATLSGGERQRVAIGRALLSSPR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4148 154 LLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
13-253 |
7.50e-26 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 103.65 E-value: 7.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglkPYQIAAKGITRTFQNIRLFG 92
Cdd:PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT---HRSIQQRDICMVFQSYALFP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENvliarhlhVPYNM-MhaifrLGkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:PRK11432 92 HMSLGEN--------VGYGLkM-----LG---VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI--KNNSRVIEA 249
Cdd:PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyrQPASRFMAS 235
|
....
gi 694165643 250 YLGE 253
Cdd:PRK11432 236 FMGD 239
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-242 |
9.13e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 105.27 E-value: 9.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGI--YLPTTGDIIFK-----------GESIVG- 70
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyveRPSKVGe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 71 --------LKPYQI----AAKGITRTF---------QNIRLFGELSVLENVLIARHlhvpynmmhaifRLGkfYRGEKEM 129
Cdd:TIGR03269 81 pcpvcggtLEPEEVdfwnLSDKLRRRIrkriaimlqRTFALYGDDTVLDNVLEALE------------EIG--YEGKEAV 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 130 rDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPrETTELME--LIDFIRgKFNMTIL 207
Cdd:TIGR03269 147 -GRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP-QTAKLVHnaLEEAVK-ASGISMV 223
|
250 260 270
....*....|....*....|....*....|....*
gi 694165643 208 LIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:TIGR03269 224 LTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
7-240 |
9.92e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 101.74 E-value: 9.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 7 THSLGISFGGlKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVG------LKpyQIAAK- 79
Cdd:PRK13649 11 TYQAGTPFEG-RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkdIK--QIRKKv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 80 GITRTFQNIRLFGElSVLENVLIArhlhvPYNmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQ 158
Cdd:PRK13649 88 GLVFQFPESQLFEE-TVLKDVAFG-----PQN----------FGVSQEEAEALAREKLALVGISESLFEKNPfELSGGQM 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 159 RRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPE 238
Cdd:PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230
|
..
gi 694165643 239 EI 240
Cdd:PRK13649 231 DI 232
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
10-255 |
1.16e-25 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 103.77 E-value: 1.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 10 LGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIR 89
Cdd:PRK09536 9 LSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-VASVPQDTS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 LFGELSVLENVLIARHLHvpynmmhaifrLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:PRK09536 88 LSFEFDVRQVVEMGRTPH-----------RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 170 HPSLLLLDEPAAGMNPR---ETTELM-ELIDfiRGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSR 245
Cdd:PRK09536 157 ATPVLLLDEPTASLDINhqvRTLELVrRLVD--DGK---TAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231
|
250
....*....|
gi 694165643 246 VIEAYLGEGA 255
Cdd:PRK09536 232 LRAAFDARTA 241
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
11-229 |
1.89e-25 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 99.25 E-value: 1.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISF---GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkPYQIAAKGITRTFQN 87
Cdd:cd03226 4 NISFsykKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI----KAKERRKSIGYVMQD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 IR--LFGElSVLENVLI-ARHLHVPYNmmhaifrlgkfyrgekemrdEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03226 80 VDyqLFTD-SVREELLLgLKELDAGNE--------------------QAETVLKDLDLYALKERHPLSLSGGQKQRLAIA 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELaaQGK---AVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
20-229 |
2.56e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.85 E-value: 2.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGEsivglkpyQIAAKGITR--TFQNIRLFGELSVL 97
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGK--------QITEPGPDRmvVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVLIARHLHVPYnmmhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:TIGR01184 73 ENIALAVDRVLPD-------------LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 694165643 178 EPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
4-240 |
2.91e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 100.65 E-value: 2.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF-GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAaKGIT 82
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR-KFVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNI--RLFGElSVLENVLIArhlhvPYNMMhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK13652 82 LVFQNPddQIFSP-TVEQDIAFG-----PINLG----------LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-248 |
3.38e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 100.47 E-value: 3.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIAAKGITR 83
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG------KPLDYSKRGLLA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIrlfgelsvlENVLIARHLHVPYNMMHA--IFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRL 161
Cdd:PRK13638 75 LRQQV---------ATVFQDPEQQIFYTDIDSdiAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMtILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
....*..
gi 694165643 242 NNSRVIE 248
Cdd:PRK13638 225 ACTEAME 231
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-240 |
3.41e-25 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 103.73 E-value: 3.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFK-GESIVGLKPYQIAAKG--- 80
Cdd:TIGR03269 285 VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPGPDGRGrak 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 --ITRTFQNIRLFGELSVLENVLIARHLHVP--YNMMHAIFRLGKFYRGEKEmrdeAYELLkimnlahkaEEKAKNLPYG 156
Cdd:TIGR03269 365 ryIGILHQEYDLYPHRTVLDNLTEAIGLELPdeLARMKAVITLKMVGFDEEK----AEEIL---------DKYPDELSEG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGT 236
Cdd:TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
|
....
gi 694165643 237 PEEI 240
Cdd:TIGR03269 512 PEEI 515
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
4-248 |
3.86e-25 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 99.77 E-value: 3.86e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKpyqiAAKGItr 83
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG----AERGV-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQNIRLFGELSVLENVLIArhlhvpynmmhaiFRLGKFYRGEKEMRdeAYELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK11248 75 VFQNEGLLPWRNVQDNVAFG-------------LQLAGVEKMQRLEI--AHQMLKKVGLEGAEKRYIWQLSGGQRQRVGI 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMH--------LVM------NICERIYvLDYG 229
Cdd:PRK11248 140 ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEeavfmateLVLlspgpgRVVERLP-LNFA 218
|
250 260
....*....|....*....|
gi 694165643 230 VNIAHGTP-EEIKNNSRVIE 248
Cdd:PRK11248 219 RRFVAGESsRSIKSDPQFIA 238
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-240 |
1.58e-24 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 98.52 E-value: 1.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkpYQIAAKGI 81
Cdd:PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI-----QHYASKEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTF----QNIRLFGELSVLENVLIARHLHVPYnmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGE 157
Cdd:PRK10253 80 ARRIgllaQNATTPGDITVQELVARGRYPHQPL-----------FTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTP 237
Cdd:PRK10253 149 RQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228
|
...
gi 694165643 238 EEI 240
Cdd:PRK10253 229 KEI 231
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
22-235 |
1.98e-24 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 96.79 E-value: 1.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKGITRTFQNIRLFGELSVLENVL 101
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSMLFQENNLFAHLTVEQNVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 102 IARhlhVPynmmhaifRLgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAA 181
Cdd:cd03298 93 LGL---SP--------GL----KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 694165643 182 GMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03298 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
20-215 |
1.98e-24 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 97.58 E-value: 1.98e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKGITRT------FQNIRLFGE 93
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS---AAKAELRNqklgfiYQFHHLLPD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENVLIArhlhvpynmmhaiFRLGKFYRGEKEMRdeAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:PRK11629 102 FTALENVAMP-------------LLIGKKKPAEINSR--ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHL 215
Cdd:PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
7-235 |
2.89e-24 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 96.67 E-value: 2.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 7 THSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglKPYQIAAKGITRTFQ 86
Cdd:cd03266 8 TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV--KEPAEARRRLGFVSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGELSVLENVLIARHLHvpynmmhaifrlgKFYRGEKEMRDEayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:cd03266 86 STGLYDRLTARENLEYFAGLY-------------GLKGDELTARLE--ELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDFIR--GKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRalGK---CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
4-240 |
2.96e-24 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 97.39 E-value: 2.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAaKGITR 83
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA-RRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TFQnIRLFGE-LSVLENVLIARHLHVPYnmmhaifrLGKFYRGEKEMRDEAYEllkIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:PRK11231 81 LPQ-HHLTPEgITVRELVAYGRSPWLSL--------WGRLSAEDNARVNQAME---QTRINHLADRRLTDLSGGQRQRAF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELIDFIR--GKFNMTILlieHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNtqGKTVVTVL---HDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
11-243 |
4.42e-24 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 99.34 E-value: 4.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFGglkaVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP---YQIAAKGITRTFQN 87
Cdd:PRK10070 39 GLSLG----VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDaelREVRRKKIAMVFQS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 IRLFGELSVLENVLIARHLH-VPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:PRK10070 115 FALMPHMTVLDNTAFGMELAgIN----------------AEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:PRK10070 179 LAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-249 |
4.74e-24 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 100.13 E-value: 4.74e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG 80
Cdd:PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENVLiarhlhvpynmmhaiFRLGKFYRGEKEMRdeayELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK15439 88 IYLVPQEPLLFPNLSVKENIL---------------FGLPKRQASMQKMK----QLLAALGCQLDLDSSAGSLEVADRQI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVnIAHGTPEEI 240
Cdd:PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGT-IALSGKTAD 226
|
....*....
gi 694165643 241 KNNSRVIEA 249
Cdd:PRK15439 227 LSTDDIIQA 235
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-255 |
5.62e-24 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 96.72 E-value: 5.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiaakg 80
Cdd:PRK09544 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 itrtfqnirlfgelsvlenvliaRHLHVPYNMMHAIFRLGKFYRGEKemRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK09544 74 -----------------------QKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDAPMQKLSGGETQR 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVnIAHGTPEEI 240
Cdd:PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHI-CCSGTPEVV 207
|
250
....*....|....*
gi 694165643 241 KNNSRVIEAYLGEGA 255
Cdd:PRK09544 208 SLHPEFISMFGPRGA 222
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-229 |
6.95e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 99.75 E-value: 6.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFkGESIvglkpyQIAakgitr 83
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV------KIG------ 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TF--QNIRLFGELSVLENVliaRHLHVPYNMMHAIFRLGKF-YRGEkemrdeayellkimnlahKAEEKAKNLPYGEQRR 160
Cdd:COG0488 382 YFdqHQEELDPDKTVLDEL---RDGAPGGTEQEVRGYLGRFlFSGD------------------DAFKPVGVLSGGEKAR 440
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 161 LEIARALATHPSLLLLDEPaagMN---PrETTELME--LIDFiRGkfnmTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:COG0488 441 LALAKLLLSPPNVLLLDEP---TNhldI-ETLEALEeaLDDF-PG----TVLLVSHDRYFLDRVATRILEFEDG 505
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
18-235 |
7.35e-24 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 95.35 E-value: 7.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIaAKGITRTFQNIRLF-GelSV 96
Cdd:cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL-RRNIGYVPQDVTLFyG--TL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLIARHLHVPYNMMHAIFRLG--KFYRGEKemrdeayellkiMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:cd03245 95 RDNITLGAPLADDERILRAAELAGvtDFVNKHP------------NGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 175 LLDEPAAGMNPRETTELME-LIDFIRGKfnmTILLIEHDMHLvMNICERIYVLDYGVNIAHG 235
Cdd:cd03245 163 LLDEPTSAMDMNSEERLKErLRQLLGDK---TLIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
18-250 |
7.69e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 97.11 E-value: 7.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFkGESIVGLKPYQIAAKGITRTFQNIRLFGELSVL 97
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVLIARHLHVPYNmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIARALATHPSLLLL 176
Cdd:PRK13643 99 EETVLKDVAFGPQN----------FGIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVL 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 177 DEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEAY 250
Cdd:PRK13643 169 DEPTAGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAH 241
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
6-229 |
9.15e-24 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 96.29 E-value: 9.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 6 QTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAkgITRTF 85
Cdd:PRK10419 14 AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA--FRRDI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 QnirlfgelSVLENVLIARHlhvPYNMMHAIFR-----LGKFYRGEKEMRdeAYELLKIMNLAhkaEEKAKNLPY----G 156
Cdd:PRK10419 92 Q--------MVFQDSISAVN---PRKTVREIIReplrhLLSLDKAERLAR--ASEMLRAVDLD---DSVLDKRPPqlsgG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
19-255 |
1.02e-23 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 95.53 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGE--SIVGLkpyqiaAKGitrtFQnirlfGELSV 96
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGRvsALLEL------GAG----FH-----PELTG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENV-LIARHLHVPYNMMHAIFR-------LGKFyrgekemrdeayellkimnlahkAEEKAKNLPYGEQRRLEIARALA 168
Cdd:COG1134 106 RENIyLNGRLLGLSRKEIDEKFDeivefaeLGDF-----------------------IDQPVKTYSSGMRARLAFAVATA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 169 THPSLLLLDEP-AAG--------MNprettELMELIDfiRGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEE 239
Cdd:COG1134 163 VDPDILLVDEVlAVGdaafqkkcLA-----RIRELRE--SGR---TVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEE 232
|
250
....*....|....*.
gi 694165643 240 iknnsrVIEAYLGEGA 255
Cdd:COG1134 233 ------VIAAYEALLA 242
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-227 |
2.51e-23 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 94.42 E-value: 2.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF-----GG--LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGES----IV 69
Cdd:COG4778 1 MTTLLEVENLSKTFtlhlqGGkrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgwvdLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 70 GLKPYQIAA---KGITRTFQNIRLFGELSVLENVliarhlhvpynmMHAIFRLGkfyRGEKEMRDEAYELLKIMNLahka 146
Cdd:COG4778 81 QASPREILAlrrRTIGYVSQFLRVIPRVSALDVV------------AEPLLERG---VDREEARARARELLARLNL---- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 147 EEKAKNLPY-----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNI 219
Cdd:COG4778 142 PERLWDLPPatfsgGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkaRGT---AIIGIFHDEEVREAV 218
|
....*...
gi 694165643 220 CERIYVLD 227
Cdd:COG4778 219 ADRVVDVT 226
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-240 |
3.05e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 94.82 E-value: 3.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAIlQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiAAKG 80
Cdd:PRK11264 1 MSAI-EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS-QQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITR--------TFQNIRLFGELSVLENVlIARHLHVpynmmhaifrlgkfyrgEKEMRDEAY----ELLKIMNLAHKAEE 148
Cdd:PRK11264 79 LIRqlrqhvgfVFQNFNLFPHRTVLENI-IEGPVIV-----------------KGEPKEEATararELLAKVGLAGKETS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 149 KAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPrettELM-ELIDFIRG--KFNMTILLIEHDMHLVMNICERIYV 225
Cdd:PRK11264 141 YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP----ELVgEVLNTIRQlaQEKRTMVIVTHEMSFARDVADRAIF 216
|
250
....*....|....*
gi 694165643 226 LDYGVNIAHGTPEEI 240
Cdd:PRK11264 217 MDQGRIVEQGPAKAL 231
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
4-226 |
5.25e-23 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 97.17 E-value: 5.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYlPT---TGDIIFKGEsIVGLKpyQIA--- 77
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVY-PHgsyEGEILFDGE-VCRFK--DIRdse 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKGITRTFQNIRLFGELSVLENVL----IARHLHVPYNmmhaifrlgkfyrgekEMRDEAYELLKIMNLAHKAEEKAKNL 153
Cdd:NF040905 77 ALGIVIIHQELALIPYLSIAENIFlgneRAKRGVIDWN----------------ETNRRARELLAKVGLDESPDTLVTDI 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 154 PYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVL 226
Cdd:NF040905 141 GVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVL 212
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
3-239 |
1.17e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 93.30 E-value: 1.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GI 81
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRrAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRtfQNIRLFGELSVLENVLIARHLHvpynmmhaifrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRL 161
Cdd:PRK13548 81 LP--QHSSLSFPFTVEEVVAMGRAPH---------------GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 162 EIARALA--TH----PSLLLLDEPAAGMNPRETTELMELI-DFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAH 234
Cdd:PRK13548 144 QLARVLAqlWEpdgpPRWLLLDEPTSALDLAHQHHVLRLArQLAHER-GLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222
|
....*
gi 694165643 235 GTPEE 239
Cdd:PRK13548 223 GTPAE 227
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
19-243 |
1.38e-22 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 92.43 E-value: 1.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLP----TTGDIIFKGESIVGLKPYQIAAKGItrtFQNIRlfgel 94
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLSIRGRHIATI---MQNPR----- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHlhvpyNMMHAIFRLGKFYrgeKEMRDEAYELLKIMNLAHkAEEKAKNLPY----GEQRRLEIARALATH 170
Cdd:TIGR02770 73 TAFNPLFTMGN-----HAIETLRSLGKLS---KQARALILEALEAVGLPD-PEEVLKKYPFqlsgGMLQRVMIALALLLE 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:TIGR02770 144 PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-236 |
1.80e-22 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 92.38 E-value: 1.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTgiyLPTTGDIifkgeSIVGLK--------P 73
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSllrVLNLLE---MPRSGTL-----NIAGNHfdfsktpsD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 74 YQIAA--KGITRTFQNIRLFGELSVLENvLIARHLHVpynmmhaifrLGkfyRGEKEMRDEAYELLKIMNLAHKAEEKAK 151
Cdd:PRK11124 75 KAIRElrRNVGMVFQQYNLWPHLTVQQN-LIEAPCRV----------LG---LSKDQALARAEKLLERLRLKPYADRFPL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVN 231
Cdd:PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHI 219
|
....*
gi 694165643 232 IAHGT 236
Cdd:PRK11124 220 VEQGD 224
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-245 |
2.07e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 92.28 E-value: 2.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTGIYLP--TTGDIIFKGESIVGLkPYQIA 77
Cdd:PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTllrVFNRLIELYPEarVSGEVYLDGQDIFKM-DVIEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKGITRTFQNIRLFGELSVLENVLIArhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEK----AKNL 153
Cdd:PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALG-------------LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRldapAGKL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 154 PYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELidFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIA 233
Cdd:PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL--FLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
250
....*....|..
gi 694165643 234 HGTPEEIKNNSR 245
Cdd:PRK14247 226 WGPTREVFTNPR 237
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
16-242 |
2.53e-22 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 95.85 E-value: 2.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 16 GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglKPYQIAAKGITRTFQNIRLFGELS 95
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLT 1019
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVLIARHLHvpynmmhaifrlgkfYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:TIGR01257 1020 VAEHILFYAQLK---------------GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 176 LDEPAAGMNPRETTELMELIdfIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
5-236 |
2.75e-22 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 92.00 E-value: 2.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTgiyLPTTGDIIFKGESI-----VGLKPYQI 76
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSllrVLNLLE---TPDSGQLNIAGHQFdfsqkPSEKAIRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 AAKGITRTFQNIRLFGELSVLENVLIArhlhvPYNmmhaIFRLGKfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYG 156
Cdd:COG4161 80 LRQKVGMVFQQYNLWPHLTVMENLIEA-----PCK----VLGLSK-----EQAREKAMKLLARLRLTDKADRFPLHLSGG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIrGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGT 236
Cdd:COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD 224
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-226 |
1.37e-21 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.12 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISFGGL--------KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP 73
Cdd:TIGR02857 312 APVTAAPASSLEFSGVsvaypgrrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 74 yQIAAKGITRTFQNIRLFgELSVLENVLIARhlhvPYNMMHAIfrlgkfyrGEKEMRDEAYELLKIM--NLAHKAEEKAK 151
Cdd:TIGR02857 392 -DSWRDQIAWVPQHPFLF-AGTIAENIRLAR----PDASDAEI--------REALERAGLDEFVAALpqGLDTPIGEGGA 457
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNiCERIYVL 226
Cdd:TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAAL-ADRIVVL 529
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
15-239 |
2.39e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 89.21 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIaAKGITRTFQNIRLFGEl 94
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL-RSMIGVVLQDTFLFSG- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARhlhvPYNMMHAIFRLGKfyrgEKEMRDEayellkIMNLA----HKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:cd03254 92 TIMENIRLGR----PNATDEEVIEAAK----EAGAHDF------IMKLPngydTVLGENGGNLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 171 PSLLLLDEPAAGMNPrETTELME--LIDFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEE 239
Cdd:cd03254 158 PKILILDEATSNIDT-ETEKLIQeaLEKLMKGR---TSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDE 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
5-216 |
2.51e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 88.18 E-value: 2.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqIAAKGITRT 84
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRD--EPHENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIARHLHvpynmmhaifrlgkfyRGEKEMRDEAYELlkiMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:TIGR01189 79 GHLPGLKPELSALENLHFWAAIH----------------GGAQRTIEDALAA---VGLTGFEDLPAAQLSAGQQRRLALA 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLV 216
Cdd:TIGR01189 140 RLWLSRRPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
18-239 |
3.39e-21 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 88.75 E-value: 3.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAK-GITRtfQNIRLFgELSV 96
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQiGLVS--QEPVLF-DGTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVliarhlhvpynmmhaifRLGKFYRGEKEMRD-----EAYELlkIMNLAHKAE----EKAKNLPYGEQRRLEIARAL 167
Cdd:cd03249 94 AENI-----------------RYGKPDATDEEVEEaakkaNIHDF--IMSLPDGYDtlvgERGSQLSGGQKQRIAIARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEE 239
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
13-240 |
3.90e-21 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 90.86 E-value: 3.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKGITRTFQNIRLFG 92
Cdd:PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQSYALYP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENvliarhlhvpynmMHAIFRLGKFYRGEKEMR-DEAYELLKimnLAHKAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:PRK11000 89 HLSVAEN-------------MSFGLKLAGAKKEEINQRvNQVAEVLQ---LAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGvNIAH-GTPEEI 240
Cdd:PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG-RVAQvGKPLEL 221
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
20-252 |
4.53e-21 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 89.08 E-value: 4.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI-----------VGLKPYQI-AAKGITrtfqn 87
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLeswsskafarkVAYLPQQLpAAEGMT----- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 irlfgelsVLENVLIARHlhvPYnmmHAIfrLGKFYRGEKEMRDEAYELLKIMNLAHKAeekAKNLPYGEQRRLEIARAL 167
Cdd:PRK10575 102 --------VRELVAIGRY---PW---HGA--LGRFGAADREKVEEAISLVGLKPLAHRL---VDSLSGGERQRAWIAMLV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKnNSRVI 247
Cdd:PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM-RGETL 241
|
....*
gi 694165643 248 EAYLG 252
Cdd:PRK10575 242 EQIYG 246
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
18-250 |
6.71e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 89.07 E-value: 6.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVG------LKPYQiaaKGITRTFQnirlF 91
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHktkdkyIRPVR---KRIGMVFQ----F 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 GELSVLENVLIARHLHVPYNmmhaifrlgkFYRGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIARALATH 170
Cdd:PRK13646 94 PESQLFEDTVEREIIFGPKN----------FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPfQMSGGQMRKIAIVSILAMN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEAY 250
Cdd:PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
11-239 |
8.03e-21 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 90.99 E-value: 8.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISF---GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQN 87
Cdd:COG1132 344 NVSFsypGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQ-IGVVPQD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 IRLFgELSVLENVliarhlhvpynmmhaifRLGKFYRGEKEMRD-----EAYELlkIMNLAHKAE----EKAKNLPYGEQ 158
Cdd:COG1132 423 TFLF-SGTIRENI-----------------RYGRPDATDEEVEEaakaaQAHEF--IEALPDGYDtvvgERGVNLSGGQR 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 159 RRLEIARALATHPSLLLLDEPAAGMNPRetTELM---ELIDFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHG 235
Cdd:COG1132 483 QRIAIARALLKDPPILILDEATSALDTE--TEALiqeALERLMKGR---TTIVIAHRLSTIRN-ADRILVLDDGRIVEQG 556
|
....
gi 694165643 236 TPEE 239
Cdd:COG1132 557 THEE 560
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
19-240 |
9.07e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 88.53 E-value: 9.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQN---------IR 89
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ-VGMVFQNpdnqfvgatVQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 ---LFGelsvLENVLIARhlhvpynmmhaifrlgkfyrgeKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:PRK13635 101 ddvAFG----LENIGVPR----------------------EEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
14-245 |
9.72e-21 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 88.10 E-value: 9.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI------------VGLKPYQIAAKGI 81
Cdd:PRK10619 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvrdkdgqlkvADKNQLRLLRTRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRLFGELSVLENVLIArhlhvPYNmmhaIFRLGKfyrgeKEMRDEAYELLKIMNLAHKAEEK-AKNLPYGEQRR 160
Cdd:PRK10619 95 TMVFQHFNLWSHMTVLENVMEA-----PIQ----VLGLSK-----QEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPE 238
Cdd:PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLaeEGK---TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
|
....*..
gi 694165643 239 EIKNNSR 245
Cdd:PRK10619 238 QLFGNPQ 244
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
13-233 |
1.23e-20 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 90.17 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLFG 92
Cdd:PRK10982 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIARhlhvpYNMMHAIFRLGKFYRGEKEMRDEayellkiMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:PRK10982 87 QRSVMDNMWLGR-----YPTKGMFVDQDKMYRDTKAIFDE-------LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIA 233
Cdd:PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIA 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-240 |
1.43e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 90.13 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLK----AVQDLNLTLNEGDLVGLIGPNGAGKT----TVFNLLTGIYLPTTGDIIFKGESIVGLK 72
Cdd:COG4172 3 SMPLLSVEDLSVAFGQGGgtveAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 73 PYQIAA---KGITRTFQ----------NI-RLFGElsVLEnvliarhLHvpynmmhaiFRLGKfyrgeKEMRDEAYELLK 138
Cdd:COG4172 83 ERELRRirgNRIAMIFQepmtslnplhTIgKQIAE--VLR-------LH---------RGLSG-----AAARARALELLE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 139 IMNLAHkAEEKAKNLPY----GEQRRLEIARALATHPSLLLLDEPaagmnpreTTEL--------MELIDFIRGKFNMTI 206
Cdd:COG4172 140 RVGIPD-PERRLDAYPHqlsgGQRQRVMIAMALANEPDLLIADEP--------TTALdvtvqaqiLDLLKDLQRELGMAL 210
|
250 260 270
....*....|....*....|....*....|....
gi 694165643 207 LLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4172 211 LLITHDLGVVRRFADRVAVMRQGEIVEQGPTAEL 244
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-240 |
1.46e-20 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 88.63 E-value: 1.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKT-TVFNLL-----TGIylpTTGDIIFKGESIVG 70
Cdd:PRK09473 9 ADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMgllaaNGR---IGGSATFNGREILN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 71 LKPYQ---IAAKGITRTFQN--------IRLfGELsvLENVLiarhlhvpynMMHAifRLGKfyrgekemrDEAYELLKI 139
Cdd:PRK09473 86 LPEKElnkLRAEQISMIFQDpmtslnpyMRV-GEQ--LMEVL----------MLHK--GMSK---------AEAFEESVR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 140 MNLAHKAEEKAKNL---PY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHD 212
Cdd:PRK09473 142 MLDAVKMPEARKRMkmyPHefsgGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
|
250 260
....*....|....*....|....*...
gi 694165643 213 MHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK09473 222 LGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
14-229 |
1.87e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 86.47 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIA--AKGITRTFQNIRLF 91
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflRRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 GELSVLENVLIarhlhvPYNMMHAifrlgkfyRGEKEMRDEAYELLKIMNLahkaeEKAKNLPY----GEQRRLEIARAL 167
Cdd:PRK10908 92 MDRTVYDNVAI------PLIIAGA--------SGDDIRRRVSAALDKVGLL-----DKAKNFPIqlsgGEQQRVGIARAV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDfirgKFN---MTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFE----EFNrvgVTVLMATHDIGLISRRSYRMLTLSDG 213
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
17-251 |
3.40e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 87.45 E-value: 3.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFK----------------GESIVGLKPYQIAAK- 79
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIfkdeknkkktkekekvLEKLVIQKTRFKKIKk 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 80 --------GITRTFQNIRLFgELSVLENVLI-ARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKA 150
Cdd:PRK13651 100 ikeirrrvGVVFQFAEYQLF-EQTIEKDIIFgPVSMGVS----------------KEEAKKRAAKYIELVGLDESYLQRS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 151 K-NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK13651 163 PfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
250 260
....*....|....*....|...
gi 694165643 230 VNIAHGTPEEI-KNNSRVIEAYL 251
Cdd:PRK13651 242 KIIKDGDTYDIlSDNKFLIENNM 264
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
15-212 |
3.96e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 88.96 E-value: 3.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGEl 94
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDAHLFDT- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHLHVPYNMMHAIFR--LGKFYRGEKEmrdeayellkimNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:TIGR02868 424 TVRENLRLARPDATDEELWAALERvgLADWLRALPD------------GLDTVLGEGGARLSGGERQRLALARALLADAP 491
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 694165643 173 LLLLDEPAAGMNPRETTELME-LIDFIRGKfnmTILLIEHD 212
Cdd:TIGR02868 492 ILLLDEPTEHLDAETADELLEdLLAALSGR---TVVLITHH 529
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
17-225 |
4.07e-20 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 87.48 E-value: 4.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIrlFGEL 94
Cdd:COG4608 31 VKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPlrRRMQMVFQDP--YASL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 -------SVLENVLiarhlhvpynmmhAIFRLGkfyrGEKEMRDEAYELLKIMNLAhkaEEKAKNLPY---GEQR-RLEI 163
Cdd:COG4608 109 nprmtvgDIIAEPL-------------RIHGLA----SKAERRERVAELLELVGLR---PEHADRYPHefsGGQRqRIGI 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 164 ARALATHPSLLLLDEP---------AAGMNprettELMELidfiRGKFNMTILLIEHDMHLVMNICERIYV 225
Cdd:COG4608 169 ARALALNPKLIVCDEPvsaldvsiqAQVLN-----LLEDL----QDELGLTYLFISHDLSVVRHISDRVAV 230
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
5-241 |
5.43e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 84.89 E-value: 5.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGI--YLPTTGDIIFKGESIVGLKPYQIAAKGIT 82
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQN-IRLFGelsvlenvliarhlhvpynmmhaiFRLGKFYRGekemrdeayellkiMNlahkaeekaKNLPYGEQRRL 161
Cdd:cd03217 81 LAFQYpPEIPG------------------------VKNADFLRY--------------VN---------EGFSGGEKKRN 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNI-CERIYVLDYGVNIAHGTPEEI 240
Cdd:cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELA 192
|
.
gi 694165643 241 K 241
Cdd:cd03217 193 L 193
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
17-247 |
7.29e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 86.22 E-value: 7.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGdiifkgESIVGlkPYQIAAkGITRTFQNIRLFGELSV 96
Cdd:PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG------QTIVG--DYAIPA-NLKKIKEVKRLRKEIGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 lenVLIARHLHVPYNMMHAIFRLGKFYRGEKemRDEAY----ELLKIMNLAhkaEEKAKNLPY----GEQRRLEIARALA 168
Cdd:PRK13645 95 ---VFQFPEYQLFQETIEKDIAFGPVNLGEN--KQEAYkkvpELLKLVQLP---EDYVKRSPFelsgGQKRRVALAGIIA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 169 THPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVI 247
Cdd:PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
13-229 |
1.42e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 84.73 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIfkgesiVGLKPYQIAAKGITRTFQNIRLFG 92
Cdd:PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL------AGTAPLAEAREDTRLMFQDARLLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVliarhlhvpynmmhaifrlGKFYRGEkeMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:PRK11247 95 WKKVIDNV-------------------GLGLKGQ--WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
19-240 |
1.48e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 85.14 E-value: 1.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIrlfgelsvlE 98
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP---------D 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIA-----------RHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARAL 167
Cdd:PRK13633 96 NQIVAtiveedvafgpENLGIP----------------PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-214 |
2.06e-19 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 84.32 E-value: 2.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTGIYlP---TTGDIIFKGESIVGLK-- 72
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTllrCLNRMNDLI-PgarVEGEILLDGEDIYDPDvd 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 73 PYQIAAKgITRTFQNIRLFgELSVLENVLIARHLHvpynmmhaifrlGkfYRGEKEMRDEAYELLKIMNL----AHKAEE 148
Cdd:COG1117 87 VVELRRR-VGMVFQKPNPF-PKSIYDNVAYGLRLH------------G--IKSKSELDEIVEESLRKAALwdevKDRLKK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 149 KAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFnmTILLIEHDMH 214
Cdd:COG1117 151 SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDY--TIVIVTHNMQ 214
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-229 |
2.49e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 82.48 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISfgglKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGI 81
Cdd:cd03215 2 EPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 ---TRTFQNIRLFGELSVLENVLIARHLhvpynmmhaifrlgkfyRGekemrdeayellkimnlahkaeekaknlpyGEQ 158
Cdd:cd03215 78 ayvPEDRKREGLVLDLSVAENIALSSLL-----------------SG------------------------------GNQ 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 159 RRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03215 111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
15-243 |
2.65e-19 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 85.34 E-value: 2.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPT---TGD-IIFKGESIVGLKPYQ---IAAKGITRTFQN 87
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvTADrFRWNGIDLLKLSPRErrkIIGREIAMIFQE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 irlfgELSVLE-NVLIARHLhvpynmMHAI----FRlGKFYRGEKEMRDEAYELL---------KIMN-LAHKaeekakn 152
Cdd:COG4170 98 -----PSSCLDpSAKIGDQL------IEAIpswtFK-GKWWQRFKWRKKRAIELLhrvgikdhkDIMNsYPHE------- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 153 LPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNI 232
Cdd:COG4170 159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTV 238
|
250
....*....|.
gi 694165643 233 AHGTPEEIKNN 243
Cdd:COG4170 239 ESGPTEQILKS 249
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-222 |
3.28e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 83.67 E-value: 3.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLT--GIYLP---TTGDIIFKGESIVGLKPYQ 75
Cdd:PRK14239 2 TEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPevtITGSIVYNGHNIYSPRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 IA-AKGITRTFQNIRLFgELSVLENVLIARHLhvpyNMMHaifrlgkfyrgEKEMRDEAYEL-LKIMNLAHKAEEK---- 149
Cdd:PRK14239 82 VDlRKEIGMVFQQPNPF-PMSIYENVVYGLRL----KGIK-----------DKQVLDEAVEKsLKGASIWDEVKDRlhds 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 150 AKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFnmTILLIEHDMHLVMNICER 222
Cdd:PRK14239 146 ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDR 216
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
19-235 |
3.54e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 82.97 E-value: 3.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglkpyQIAAK-GITRTFQnirlfGELSVL 97
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG---------RVSSLlGLGGGFN-----PELTGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVliarhlhvpyNMMHAIfrLGKFYRGEKEMRDEAYELlkimnlahkAE-EKAKNLPY-----GEQRRLEIARALATHP 171
Cdd:cd03220 103 ENI----------YLNGRL--LGLSRKEIDEKIDEIIEF---------SElGDFIDLPVktyssGMKARLAFAIATALEP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 172 SLLLLDEP-AAGmnpreTTELME-LIDFIRGKFNM--TILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03220 162 DILLIDEVlAVG-----DAAFQEkCQRRLRELLKQgkTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
17-211 |
4.54e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 82.70 E-value: 4.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLP---TTGDIIFKGESivgLKPYQIAaKGITRTFQNIRLFGE 93
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQP---RKPDQFQ-KCVAYVRQDDILLPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLEnvliarhlHVPYNmmhAIFRLG-KFYRGEKEMRDEAyELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:cd03234 96 LTVRE--------TLTYT---AILRLPrKSSDAIRKKRVED-VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 694165643 173 LLLLDEPAAGMNPRETTELME-LIDFIRGkfNMTILLIEH 211
Cdd:cd03234 164 VLILDEPTSGLDSFTALNLVStLSQLARR--NRIVILTIH 201
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-241 |
4.73e-19 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 86.22 E-value: 4.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLK--AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglkpyqiaaKGI 81
Cdd:TIGR01257 1937 ILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---------TNI 2007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRLFGELSVLENVLIAR-HLHVpYNMMHAIfrlgkfyrGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGReHLYL-YARLRGV--------PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK 2078
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELI-DFIRGkfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEE 239
Cdd:TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIvSIIRE--GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156
|
..
gi 694165643 240 IK 241
Cdd:TIGR01257 2157 LK 2158
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
5-223 |
1.00e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 81.39 E-value: 1.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqIAAKGITRT 84
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD--SIARGLLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGELSVLENVLIARHLHVpynmmhaifrlgkfyrgekemRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIA 164
Cdd:cd03231 79 GHAPGIKTTLSVLENLRFWHADHS---------------------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERI 223
Cdd:cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-240 |
1.08e-18 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 83.70 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIY---LPTTGD-IIFKGESIVGLKPYQ 75
Cdd:PRK15093 3 LLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnWRVTADrMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 ---IAAKGITRTFQNIRlfgelSVLE-NVLIARHLhvpynmMHAIfrLGKFYRGEKEMR-----DEAYELLKIMNL-AHK 145
Cdd:PRK15093 83 rrkLVGHNVSMIFQEPQ-----SCLDpSERVGRQL------MQNI--PGWTYKGRWWQRfgwrkRRAIELLHRVGIkDHK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 146 aeEKAKNLPY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICE 221
Cdd:PRK15093 150 --DAMRSFPYelteGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227
|
250
....*....|....*....
gi 694165643 222 RIYVLDYGVNIAHGTPEEI 240
Cdd:PRK15093 228 KINVLYCGQTVETAPSKEL 246
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
4-240 |
1.09e-18 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 82.95 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNL----LTGIYLP----TTGDIIFKGESIVGLKPYQ 75
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPrgarVTGDVTLNGEPLAAIDAPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 IAAKGITRTFQNIRLFGeLSVLENVLIARHLHVPynmmhaifRLGKFYRGEKEMRDEAYELLKIMNLAHKaeeKAKNLPY 155
Cdd:PRK13547 81 LARLRAVLPQAAQPAFA-FSAREIVLLGRYPHAR--------RAGALTHRDGEIAWQALALAGATALVGR---DVTTLSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARALAT-HPS--------LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:PRK13547 149 GELARVQFARVLAQlWPPhdaaqpprYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228
|
250
....*....|....
gi 694165643 227 DYGVNIAHGTPEEI 240
Cdd:PRK13547 229 ADGAIVAHGAPADV 242
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
19-248 |
2.30e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 82.16 E-value: 2.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGD---IIFKGESIVGLKPYQIAAK-GITrtFQNI-RLFGE 93
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAKTVWDIREKvGIV--FQNPdNQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENVLIA-RHLHVPYNMMHAIFRlgkfyrgekemrdeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:PRK13640 100 ATVGDDVAFGlENRAVPRPEMIKIVR----------------DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVmNICERIYVLDYGVNIAHGTPEEIKNNSRVIE 248
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLK 238
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
17-248 |
2.87e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 82.21 E-value: 2.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDI----IFKGESIVGLKPYQIAAKGITRTFQNIR--- 89
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNPYSKKIKNFKELRrrv 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 ----LFGELSVLENVliarhlhVPYNMMHAIFRLGKfyrGEKEMRDEAYELLKIMNLAHKAEEKAK-NLPYGEQRRLEIA 164
Cdd:PRK13631 119 smvfQFPEYQLFKDT-------IEKDIMFGPVALGV---KKSEAKKLAKFYLNKMGLDDSYLERSPfGLSGGQKRRVAIA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 165 RALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNS 244
Cdd:PRK13631 189 GILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK-ANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
....
gi 694165643 245 RVIE 248
Cdd:PRK13631 268 HIIN 271
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
21-243 |
2.95e-18 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 83.62 E-value: 2.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPY----QIAAKGitrtfQNIRLFGElSV 96
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHylhrQVALVG-----QEPVLFSG-SV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLiarhlhvpynmmhaifrLGKFYRGEKEMRDEAYELLK---IMNLAHKAE----EKAKNLPYGEQRRLEIARALAT 169
Cdd:TIGR00958 572 RENIA-----------------YGLTDTPDEEIMAAAKAANAhdfIMEFPNGYDtevgEKGSQLSGGQKQRIAIARALVR 634
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELidfiRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:TIGR00958 635 KPRVLILDEATSALDAECEQLLQES----RSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-240 |
3.47e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 83.20 E-value: 3.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF-----------GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTT----VFNLLtgiylPTTGDIIFKGESI 68
Cdd:COG4172 275 LLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTlglaLLRLI-----PSEGEIRFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 69 VGLK-----PY----QIaakgitrTFQNIrlFGELS----VLEnvLIARHLHVpynmmHAIfrlgkfYRGEKEMRDEAYE 135
Cdd:COG4172 350 DGLSrralrPLrrrmQV-------VFQDP--FGSLSprmtVGQ--IIAEGLRV-----HGP------GLSAAERRARVAE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 136 LLKIMNLAHKAEEKaknlpY-----GEQR-RLEIARALATHPSLLLLDEPaagmnpreTTEL-----MELIDFIRG---K 201
Cdd:COG4172 408 ALEEVGLDPAARHR-----YphefsGGQRqRIAIARALILEPKLLVLDEP--------TSALdvsvqAQILDLLRDlqrE 474
|
250 260 270
....*....|....*....|....*....|....*....
gi 694165643 202 FNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4172 475 HGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQV 513
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
10-229 |
4.29e-18 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 78.26 E-value: 4.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 10 LGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGlkpyqiaakgitrtfqnir 89
Cdd:cd03221 6 LSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG------------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 LFGELSvlenvliarhlhvpynmmhaifrlGkfyrgekemrdeayellkimnlahkaeekaknlpyGEQRRLEIARALAT 169
Cdd:cd03221 67 YFEQLS------------------------G-----------------------------------GEKMRLALAKLLLE 87
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 170 HPSLLLLDEPaagmnpreTTEL-----MELIDFIRgKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:cd03221 88 NPNLLLLDEP--------TNHLdlesiEALEEALK-EYPGTVILVSHDRYFLDQVATKIIELEDG 143
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-222 |
5.20e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 80.21 E-value: 5.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAA--ILQTHSLGISFGG----LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPY 74
Cdd:PRK10584 1 MPAenIVEVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 75 QIA---AKGITRTFQNIRLFGELSVLENVliarhlhvpynmmhaifRLGKFYRGE--KEMRDEAYELLKIMNLAHKAEEK 149
Cdd:PRK10584 81 ARAklrAKHVGFVFQSFMLIPTLNALENV-----------------ELPALLRGEssRQSRNGAKALLEQLGLGKRLDHL 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 150 AKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCER 222
Cdd:PRK10584 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDR 215
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
11-239 |
8.96e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 82.18 E-value: 8.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFG----GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAkGITRTFQ 86
Cdd:PRK11160 343 NVSFTypdqPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ-AISVVSQ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGElSVLENVLIARHlhvpynmmhaifrlgkfyrgekEMRDEAY-ELLKIMNLAHKAEEKA----------KNLPY 155
Cdd:PRK11160 422 RVHLFSA-TLRDNLLLAAP----------------------NASDEALiEVLQQVGLEKLLEDDKglnawlgeggRQLSG 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELI-DFIRGKfnmTILLIEHDMHLvMNICERIYVLDYGVNIAH 234
Cdd:PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLaEHAQNK---TVLMITHRLTG-LEQFDRICVMDNGQIIEQ 554
|
....*
gi 694165643 235 GTPEE 239
Cdd:PRK11160 555 GTHQE 559
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
19-240 |
9.01e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 80.18 E-value: 9.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAaKGITRTFQN--------IRL 90
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR-KHIGIVFQNpdnqfvgsIVK 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGELSVLENVLiarhlhVPYNMMHAIFRlgkfyrgekemrdeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:PRK13648 103 YDVAFGLENHA------VPYDEMHRRVS----------------EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
18-226 |
2.85e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 80.45 E-value: 2.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGIT-----RTFQNirLFG 92
Cdd:COG1129 266 GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIAyvpedRKGEG--LVL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIArhlhvpynmmhaifRLGKFYRG----EKEMRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRRLEIARAL 167
Cdd:COG1129 344 DLSIRENITLA--------------SLDRLSRGglldRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWL 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 168 ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVL 226
Cdd:COG1129 410 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVM 467
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
18-235 |
2.91e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 76.97 E-value: 2.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKpyQIAAKGITRTFQNIRLFGElSVL 97
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE--KALSSLISVLNQRPYLFDT-TLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENvliarhlhvpynmmhaifrLGKFYRGekemrdeayellkimnlahkaeekaknlpyGEQRRLEIARALATHPSLLLLD 177
Cdd:cd03247 93 NN-------------------LGRRFSG------------------------------GERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 178 EPAAGMNPRETTELMELI-DFIRGKfnmTILLIEHdmHLV-MNICERIYVLDYGVNIAHG 235
Cdd:cd03247 124 EPTVGLDPITERQLLSLIfEVLKDK---TLIWITH--HLTgIEHMDKILFLENGKIIMQG 178
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
15-195 |
4.15e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 77.22 E-value: 4.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNirlfGEL 94
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMK----PAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHlhvpynmmhaifrlgkFYRGEKEMRDEAyelLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:PRK13539 89 TVAENLEFWAA----------------FLGGEELDIAAA---LEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW 149
|
170 180
....*....|....*....|.
gi 694165643 175 LLDEPAAGMNPRETTELMELI 195
Cdd:PRK13539 150 ILDEPTAALDAAAVALFAELI 170
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
21-179 |
4.71e-17 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 76.77 E-value: 4.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKP-YQIA------AKGITRtfqnirlfgE 93
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDeYHQDllylghQPGIKT---------E 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENVLIARHLHVPYNmmhaifrlgkfyrgekemRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:PRK13538 89 LTALENLRFYQRLHGPGD------------------DEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150
|
....*.
gi 694165643 174 LLLDEP 179
Cdd:PRK13538 151 WILDEP 156
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-221 |
5.64e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 77.77 E-value: 5.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIY-----LPTTGDIIFKGESI----VGLKPYQ 75
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNeleseVRVEGRVEFFNQNIyerrVNLNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 iaaKGITRTFQNIRLFgELSVLENVliarhlhvpynmMHAIFRLGkfYRGEKEMRDEAYELLKIMNL----AHKAEEKAK 151
Cdd:PRK14258 88 ---RQVSMVHPKPNLF-PMSVYDNV------------AYGVKIVG--WRPKLEIDDIVESALKDADLwdeiKHKIHKSAL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICE 221
Cdd:PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-223 |
7.05e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 79.77 E-value: 7.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQI 76
Cdd:PRK10535 1 MTALLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 77 AAkgITR-----TFQNIRLFGELSVLENVliarhlHVPynmmhAIFRlGKfyrGEKEMRDEAYELLKIMNLAHKAEEKAK 151
Cdd:PRK10535 81 AQ--LRRehfgfIFQRYHLLSHLTAAQNV------EVP-----AVYA-GL---ERKQRLLRAQELLQRLGLEDRVEYQPS 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 152 NLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHlVMNICERI 223
Cdd:PRK10535 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQ-VAAQAERV 213
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
20-229 |
9.75e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 76.74 E-value: 9.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIaakgitrtFQNIRLFGELSVL-- 97
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG------KPISQ--------YEHKYLHSKVSLVgq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVLIARHL--HVPYNMMHAIFRLgkfyrgEKEMRDEAYELLKIMNLAH----KAEEKAKNLPYGEQRRLEIARALATHP 171
Cdd:cd03248 96 EPVLFARSLqdNIAYGLQSCSFEC------VKEAAQKAHAHSFISELASgydtEVGEKGSQLSGGQKQRVAIARALIRNP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDfiRGKFNMTILLIEHDMHLVMNiCERIYVLDYG 229
Cdd:cd03248 170 QVLILDEATSALDAESEQQVQQALY--DWPERRTVLVIAHRLSTVER-ADQILVLDGG 224
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
18-240 |
1.33e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 78.67 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIR---LFGEL 94
Cdd:PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNF 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHLhvpynmmhaifRLGKF--------YRGEKEMRDEAYELLKIMnlAHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:PRK09700 357 SIAQNMAISRSL-----------KDGGYkgamglfhEVDEQRTAENQRELLALK--CHSVNQNITELSGGNQQKVLISKW 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYG------VNIAHGTPE 238
Cdd:PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLadDGK---VILMVSSELPEIITVCDRIAVFCEGrltqilTNRDDMSEE 500
|
..
gi 694165643 239 EI 240
Cdd:PRK09700 501 EI 502
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
16-240 |
2.08e-16 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 78.22 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 16 GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGElS 95
Cdd:TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFND-T 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVliarhlhvpynmmhAIFRLGKFYRGEKEMRDEAYELLKIMN-----LAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:TIGR02203 422 IANNI--------------AYGRTEQADRAEIERALAAAYAQDFVDklplgLDTPIGENGVLLSGGQRQRLAIARALLKD 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 171 PSLLLLDEPAAGM-NPRETT------ELMElidfirgkfNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:TIGR02203 488 APILILDEATSALdNESERLvqaaleRLMQ---------GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERGTHNEL 554
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
16-239 |
2.12e-16 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 75.73 E-value: 2.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 16 GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGElS 95
Cdd:cd03251 14 GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ-IGLVSQDVFLFND-T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVliarhlhvpynmmhaifRLGKFYRGEKEMRD-----EAYELlkIMNLAH----KAEEKAKNLPYGEQRRLEIARA 166
Cdd:cd03251 92 VAENI-----------------AYGRPGATREEVEEaaraaNAHEF--IMELPEgydtVIGERGVKLSGGQRQRIAIARA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 167 LATHPSLLLLDEPAAGMNPRETTELMELIDfiRGKFNMTILLIEHDMHLVMNIcERIYVLDYGVNIAHGTPEE 239
Cdd:cd03251 153 LLKDPPILILDEATSALDTESERLVQAALE--RLMKNRTTFVIAHRLSTIENA-DRIVVLEDGKIVERGTHEE 222
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-213 |
2.12e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 76.36 E-value: 2.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTV---FNLLTGIyLPT---TGDIIFKGESIVG--LKPYQ 75
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrcFNRLNDL-IPGfrvEGKVTFHGKNLYApdVDPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 IAAKgITRTFQNIRLFGElSVLENVLI-ARHLHVPYNMMHAIfrlgkfyrgEKEMR-----DEAYELLKIMNLAhkaeek 149
Cdd:PRK14243 89 VRRR-IGMVFQKPNPFPK-SIYDNIAYgARINGYKGDMDELV---------ERSLRqaalwDEVKDKLKQSGLS------ 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 694165643 150 aknLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFnmTILLIEHDM 213
Cdd:PRK14243 152 ---LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY--TIIIVTHNM 210
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
20-240 |
2.13e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 76.69 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNI-RLFGELSVLE 98
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK-IGMVFQNPdNQFVGATVED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIA-RHLHVPYNMMhaifrlgkfyrgeKEMRDEAYELLKIMNLahKAEEKAKnLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:PRK13650 102 DVAFGlENKGIPHEEM-------------KERVNEALELVGMQDF--KEREPAR-LSGGQKQRVAIAGAVAMRPKIIILD 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 178 EPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMnICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-240 |
2.78e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 76.28 E-value: 2.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLN---LTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIA 77
Cdd:PRK13642 1 MNKILEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKgITRTFQNI-RLFGELSVLENVLIA-RHLHVPYNMMhaIFRLgkfyrgekemrDEAyeLLKIMNLAHKAEEKAKnLPY 155
Cdd:PRK13642 81 RK-IGMVFQNPdNQFVGATVEDDVAFGmENQGIPREEM--IKRV-----------DEA--LLAVNMLDFKTREPAR-LSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHG 235
Cdd:PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEA 222
|
....*
gi 694165643 236 TPEEI 240
Cdd:PRK13642 223 APSEL 227
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
8-240 |
4.29e-16 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 77.31 E-value: 4.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 8 HSLGISFGGLK-AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI--VGLKPYQiaaKGITRT 84
Cdd:PRK13657 338 DDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIrtVTRASLR---RNIAVV 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNIRLFGElSVLENVliarhlhvpynmmhaifRLGKFYRGEKEMRD-----EAYELL--KIMNLAHKAEEKAKNLPYGE 157
Cdd:PRK13657 415 FQDAGLFNR-SIEDNI-----------------RVGRPDATDEEMRAaaeraQAHDFIerKPDGYDTVVGERGRQLSGGE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 158 QRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTP 237
Cdd:PRK13657 477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSF 553
|
...
gi 694165643 238 EEI 240
Cdd:PRK13657 554 DEL 556
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-240 |
4.99e-16 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 77.05 E-value: 4.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 2 AAILQTHSLGISFGGLK-----------AVQDLNLTLNEGDLVGLIGPNGAGKTTvfnllTGIYL----PTTGDIIFKGE 66
Cdd:PRK15134 273 SPLLDVEQLQVAFPIRKgilkrtvdhnvVVKNISFTLRPGETLGLVGESGSGKST-----TGLALlrliNSQGEIWFDGQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 67 SIVGLKPYQIAA--KGITRTFQ--NIRLFGELSVLEnvLIARHLHVPYNMMHAifrlgkfyrGEKEMRdeayeLLKIMNL 142
Cdd:PRK15134 348 PLHNLNRRQLLPvrHRIQVVFQdpNSSLNPRLNVLQ--IIEEGLRVHQPTLSA---------AQREQQ-----VIAVMEE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 143 AHKAEEKAKNLPY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMN 218
Cdd:PRK15134 412 VGLDPETRHRYPAefsgGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRA 491
|
250 260
....*....|....*....|..
gi 694165643 219 ICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK15134 492 LCHQVIVLRQGEVVEQGDCERV 513
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
19-240 |
8.37e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 74.06 E-value: 8.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGElSVLE 98
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ-VGVVLQENVLFNR-SIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIARhlhvPYNMMHAIF---RLGKFYRGEKEMRdEAYELLkimnlahkAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:cd03252 95 NIALAD----PGMSMERVIeaaKLAGAHDFISELP-EGYDTI--------VGEQGAGLSGGQRQRIAIARALIHNPRILI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 176 LDEPAAGMNPRETTELME-LIDFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:cd03252 162 FDEATSALDYESEHAIMRnMHDICAGR---TVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-240 |
2.00e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 73.98 E-value: 2.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAIlqthSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTG-----DIIFKGESIVGLKPYQ 75
Cdd:PRK14271 22 MAAV----NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRDVL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 IAAKGITRTFQNIRLFgELSVLENVLIARHLH--VPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNL 153
Cdd:PRK14271 98 EFRRRVGMLFQRPNPF-PMSIMDNVLAGVRAHklVP----------------RKEFRGVAQARLTEVGLWDAVKDRLSDS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 154 PY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfnMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK14271 161 PFrlsgGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDG 238
|
250
....*....|.
gi 694165643 230 VNIAHGTPEEI 240
Cdd:PRK14271 239 RLVEEGPTEQL 249
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-212 |
2.72e-15 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 72.44 E-value: 2.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyQIAAKGIT 82
Cdd:PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EIYRQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTFQNIRLFGElSVLENVLIarhlhvPYNMmhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKN-LPYGEQRRL 161
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLIF------PWQI-----------RNQQPDPAIFLDDLERFALPDTILTKNIAeLSGGEKQRI 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHD 212
Cdd:PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
22-229 |
3.03e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 74.70 E-value: 3.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGIT-----RtfQNIRLFGELSV 96
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylpedR--QSSGLYLDAPL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVliarhlhvpYNMMHAifRLGKFYRGEKEMR--DEAYELLKImNLAHkAEEKAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:PRK15439 359 AWNV---------CALTHN--RRGFWIKPARENAvlERYRRALNI-KFNH-AEQAARTLSGGNQQKVLIAKCLEASPQLL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 175 LLDEPAAGMNPRETTELMELIDFIrGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSI-AAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
12-239 |
3.43e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 72.65 E-value: 3.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 12 ISFG---GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglKPYQIAA--KGITRTFQ 86
Cdd:cd03253 6 VTFAydpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI---REVTLDSlrRAIGVVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGElSVLENVliarhlhvpynmmhaifRLGKFYRGEKEMRdEAYELL----KIMNLAHKAE----EKAKNLPYGEQ 158
Cdd:cd03253 83 DTVLFND-TIGYNI-----------------RYGRPDATDEEVI-EAAKAAqihdKIMRFPDGYDtivgERGLKLSGGEK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 159 RRLEIARALATHPSLLLLDEPAAGMNPRETTELME-LIDFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTP 237
Cdd:cd03253 144 QRVAIARAILKNPPILLLDEATSALDTHTEREIQAaLRDVSKGR---TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTH 219
|
..
gi 694165643 238 EE 239
Cdd:cd03253 220 EE 221
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
13-235 |
4.69e-15 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 71.43 E-value: 4.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTG--IYLPTTGDIIFKGESIvglkpYQIAAKGITR-TFQNIR 89
Cdd:cd03213 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPL-----DKRSFRKIIGyVPQDDI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 LFGELSVLENVLIARHLhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaKNLPYGEQRRLEIARALAT 169
Cdd:cd03213 93 LHPTLTVRETLMFAAKL--------------------------------------------RGLSGGERKRVSIALELVS 128
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHD-MHLVMNICERIYVLDYGVNIAHG 235
Cdd:cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQpSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-211 |
4.90e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 72.57 E-value: 4.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTV---FNLLTGIY--LPTTGDIIFKGESIVGLKPYQ 75
Cdd:PRK14267 1 MKFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLELNeeARVEGEVRLFGRNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 76 IAA-KGITRTFQNIRLFGELSVLENVLIArhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMNL----AHKAEEKA 150
Cdd:PRK14267 81 IEVrREVGMVFQYPNPFPHLTIYDNVAIG-------------VKLNGLVKSKKELDERVEWALKKAALwdevKDRLNDYP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 151 KNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIdfIRGKFNMTILLIEH 211
Cdd:PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL--FELKKEYTIVLVTH 206
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
22-244 |
5.49e-15 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 73.37 E-value: 5.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDII------FKGESIVGLKPYQiaaKGITRTFQNIRLFGELS 95
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVlngrvlFDAEKGICLPPEK---RRIGYVFQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVLiarhlhvpYNMmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:PRK11144 93 VRGNLR--------YGM-------------AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 176 LDEPAAGMN-PREtTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNS 244
Cdd:PRK11144 152 MDEPLASLDlPRK-RELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
15-240 |
7.65e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 73.52 E-value: 7.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRtfqnI---R-- 89
Cdd:COG3845 269 RGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAY----IpedRlg 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 90 --LFGELSVLENVLIARHLHVPynmmhaiFRLGKFYRgEKEMRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:COG3845 345 rgLVPDMSVAENLILGRYRRPP-------FSRGGFLD-RKAIRAFAEELIEEFDVrTPGPDTPARSLSGGNQQKVILARE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 167 LATHPSLLLLDEPAAGMNPRET----TELMELIDfiRGKfnmTILLIEHDMHLVMNICERIYVLDYG-----VNIAHGTP 237
Cdd:COG3845 417 LSRDPKLLIAAQPTRGLDVGAIefihQRLLELRD--AGA---AVLLISEDLDEILALSDRIAVMYEGrivgeVPAAEATR 491
|
...
gi 694165643 238 EEI 240
Cdd:COG3845 492 EEI 494
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
19-214 |
9.51e-15 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 73.08 E-value: 9.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGELsvle 98
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL-FSAVFTDFHLFDQL---- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 nvliarhlhvpynmmhaifrLGKfyrGEKEMRDEAYEL-LKIMNLAHKAEEKAK-----NLPYGEQRRLEIARALATHPS 172
Cdd:PRK10522 413 --------------------LGP---EGKPANPALVEKwLERLKMAHKLELEDGrisnlKLSKGQKKRLALLLALAEERD 469
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 694165643 173 LLLLDEPAAGMNP--RET--TELMELIDfIRGKfnmTILLIEHDMH 214
Cdd:PRK10522 470 ILLLDEWAADQDPhfRREfyQVLLPLLQ-EMGK---TIFAISHDDH 511
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
20-240 |
1.60e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 71.23 E-value: 1.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTT---VFNLLTGIY---LPTTGDIIFKGESIVGLKPYQIAaKGITRTFQNIRLFGE 93
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTllkVLNRLIEIYdskIKVDGKVLYFGKDIFQIDAIKLR-KEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENvlIARHLHvpynmMHAIfrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEK----AKNLPYGEQRRLEIARALAT 169
Cdd:PRK14246 105 LSIYDN--IAYPLK-----SHGI-------KEKREIKKIVEECLRKVGLWKEVYDRlnspASQLSGGQQQRLTIARALAL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKfnMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
23-243 |
2.17e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 72.18 E-value: 2.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGiYLPTTGDIIFKGESIVGLKP----YQIAAKGitrtfQNIRLFgELSVLE 98
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPeswrKHLSWVG-----QNPQLP-HGTLRD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIARHLHVPYNMMHAIfrlgkfyrgekeMRDEAYELLKIMN--LAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLL 176
Cdd:PRK11174 442 NVLLGNPDASDEQLQQAL------------ENAWVSEFLPLLPqgLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLL 509
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 177 DEPAAGMNPRETTELME-LIDFIRGKfnmTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:PRK11174 510 DEPTASLDAHSEQLVMQaLNAASRRQ---TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA 573
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
24-252 |
2.55e-14 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 70.00 E-value: 2.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 24 NLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLFGELSVLENvlIA 103
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR---RPVSMLFQENNLFSHLTVAQN--IG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 104 RHLHVPYNMMHaifrlgkfyrgekEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGM 183
Cdd:PRK10771 94 LGLNPGLKLNA-------------AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 184 NPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGvNIAH-GTPEEIKNNSRVIEAYLG 252
Cdd:PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG-RIAWdGPTDELLSGKASASALLG 229
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
17-243 |
2.80e-14 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 71.28 E-value: 2.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQ------NI 88
Cdd:PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAvrSDIQMIFQdplaslNP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 89 RL-FGElsvlenvLIARHLHVPYNMMHaifrlgkfyrgekemRDEAYELLKIMNLahkaeeKAKNLP-----Y------G 156
Cdd:PRK15079 114 RMtIGE-------IIAEPLRTYHPKLS---------------RQEVKDRVKAMML------KVGLLPnlinrYphefsgG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGT 236
Cdd:PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245
|
....*..
gi 694165643 237 PEEIKNN 243
Cdd:PRK15079 246 YDEVYHN 252
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-251 |
3.42e-14 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 69.95 E-value: 3.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 1 MAAILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA-- 78
Cdd:PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEae 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 79 -KGITRT-----FQNIR--LFGELSVLENV---LIA---RHlhvpynmmhaifrlgkfYRgekEMRDEAYELLKIMNLah 144
Cdd:PRK11701 83 rRRLLRTewgfvHQHPRdgLRMQVSAGGNIgerLMAvgaRH-----------------YG---DIRATAGDWLERVEI-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 145 kAEEKAKNLPY----GEQRRLEIARALATHPSLLLLDEPAAGMN----PRettelmeLIDFIRG---KFNMTILLIEHDM 213
Cdd:PRK11701 141 -DAARIDDLPTtfsgGMQQRLQIARNLVTHPRLVFMDEPTGGLDvsvqAR-------LLDLLRGlvrELGLAVVIVTHDL 212
|
250 260 270
....*....|....*....|....*....|....*...
gi 694165643 214 HLVMNICERIYVLDYGvniahgtpeeiknnsRVIEAYL 251
Cdd:PRK11701 213 AVARLLAHRLLVMKQG---------------RVVESGL 235
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
3-240 |
6.69e-14 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 70.16 E-value: 6.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGG----LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTG-IYLP---TTGDIIFKGESIVGLKP- 73
Cdd:PRK11022 2 ALLNVDKLSVHFGDesapFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGlIDYPgrvMAEKLEFNGQDLQRISEk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 74 --YQIAAKGITRTFQNirlfgELSVLENVLIarhlhVPYNMMHAIfrlgKFYRG--EKEMRDEAYELLKIMNL---AHKA 146
Cdd:PRK11022 82 erRNLVGAEVAMIFQD-----PMTSLNPCYT-----VGFQIMEAI----KVHQGgnKKTRRQRAIDLLNQVGIpdpASRL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 147 EEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:PRK11022 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227
|
250
....*....|....
gi 694165643 227 DYGVNIAHGTPEEI 240
Cdd:PRK11022 228 YAGQVVETGKAHDI 241
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-229 |
6.91e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.50 E-value: 6.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISF--GGL--KAVQDLNLTLNEGDLVGLIGPNGAGKT-TVFNLLTgiYLPT------TGDIIFKGESIVgl 71
Cdd:PRK15134 4 PLLAIENLSVAFrqQQTvrTVVNDVSLQIEAGETLALVGESGSGKSvTALSILR--LLPSppvvypSGDIRFHGESLL-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 72 kpyqiaaKGITRTFQNIR------LFGELSVLENVLiarhlhvpYNMMHAIFRLGKFYRGekeMRDEAY--ELLK----- 138
Cdd:PRK15134 80 -------HASEQTLRGVRgnkiamIFQEPMVSLNPL--------HTLEKQLYEVLSLHRG---MRREAArgEILNcldrv 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 139 -IMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVM 217
Cdd:PRK15134 142 gIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVR 221
|
250
....*....|..
gi 694165643 218 NICERIYVLDYG 229
Cdd:PRK15134 222 KLADRVAVMQNG 233
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
20-230 |
8.24e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 67.24 E-value: 8.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGElSVLEN 99
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH-VGYLPQDDELFSG-SIAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 100 VLIArhlhvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknlpyGEQRRLEIARALATHPSLLLLDEP 179
Cdd:cd03246 96 ILSG----------------------------------------------------GQRQRLGLARALYGNPRILVLDEP 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 694165643 180 AAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVmNICERIYVLDYGV 230
Cdd:cd03246 124 NSHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDGR 172
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
13-240 |
8.89e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 68.96 E-value: 8.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgitrtfqnirlfg 92
Cdd:COG4604 10 RYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKR------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 eLSVL--ENVLIARhLHV---------PYNMmhaifrlGKFYRGEKEMRDEAYELLKIMNLAHKaeekaknlpY-----G 156
Cdd:COG4604 77 -LAILrqENHINSR-LTVrelvafgrfPYSK-------GRLTAEDREIIDEAIAYLDLEDLADR---------YldelsG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQR-RLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHG 235
Cdd:COG4604 139 GQRqRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQG 218
|
....*
gi 694165643 236 TPEEI 240
Cdd:COG4604 219 TPEEI 223
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-227 |
2.17e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 67.82 E-value: 2.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 26 TLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESiVGLKPYQIAAK--GITRTFqnirLFGelsvlenvLIA 103
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-VSYKPQYIKADyeGTVRDL----LSS--------ITK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 104 RHLHVPYnmmhaifrlgkfYRGekemrdeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGM 183
Cdd:cd03237 88 DFYTHPY------------FKT---------EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 694165643 184 NPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLD 227
Cdd:cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
14-240 |
2.42e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 69.38 E-value: 2.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkpyqiAAKGI-TRT-----FQN 87
Cdd:NF033858 276 FGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPV--------DAGDIaTRRrvgymSQA 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 88 IRLFGELSVLEN-VLIARHLHVPynmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARA 166
Cdd:NF033858 348 FSLYGELTVRQNlELHARLFHLP----------------AAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 167 LATHPSLLLLDEPAAGMNP--RETT-ELmeLIDFIRGKfNMTILLIEHdmhlVMN---ICERIYVLDYGVNIAHGTPEEI 240
Cdd:NF033858 412 VIHKPELLILDEPTSGVDPvaRDMFwRL--LIELSRED-GVTIFISTH----FMNeaeRCDRISLMHAGRVLASDTPAAL 484
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
16-240 |
3.52e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 67.32 E-value: 3.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 16 GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRL-FGEL 94
Cdd:PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETqFVGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIArhlhvPYNMMHAIFRLgkfyrgeKEMRDEAYELLKIMNLAHKAeekAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:PRK13644 94 TVEEDLAFG-----PENLCLPPIEI-------RKRVDRALAEIGLEKYRHRS---PKTLSGGQGQCVALAGILTMEPECL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 175 LLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHlVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENV 222
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
20-229 |
3.70e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 68.49 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIR---LFGELSV 96
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLIA--RHL-HVPYNMMHAifrlgkfyrGEKEMRDEAYELLKIMNLAhkAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:PRK10762 348 KENMSLTalRYFsRAGGSLKHA---------DEQQAVSDFIRLFNIKTPS--MEQAIGLLSGGNQQKVAIARGLMTRPKV 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 174 LLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK10762 417 LILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
19-237 |
4.54e-13 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 66.36 E-value: 4.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI--VGLKPYQIAAKGITR---TFQ-----NI 88
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIskIGLHDLRSRISIIPQdpvLFSgtirsNL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 89 RLFGELS------VLENVLIARHLhvpynmmhaifrlgkfyrgekemrdeayeLLKIMNLAHKAEEKAKNLPYGEQRRLE 162
Cdd:cd03244 99 DPFGEYSdeelwqALERVGLKEFV-----------------------------ESLPGGLDTVVEEGGENLSVGQRQLLC 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPrETTELMEliDFIRGKF-NMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTP 237
Cdd:cd03244 150 LARALLRKSKILVLDEATASVDP-ETDALIQ--KTIREAFkDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
27-239 |
8.23e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 67.76 E-value: 8.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 27 LNEGDLVGLIGPNGAGKTTVFNLLTGiYLPT----TGDIIFKGESIVGLKPYQIAAkgitRTFQNIRLFGELSVLEnvli 102
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAF-RSPKgvkgSGSVLLNGMPIDAKEMRAISA----YVQQDDLFIPTLTVRE---- 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 103 arHLhvpynMMHAIFRLGKFY--RGEKEMRDEAYELLKIMNLAHK---AEEKAKNLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:TIGR00955 119 --HL-----MFQAHLRMPRRVtkKEKRERVDEVLQALGLRKCANTrigVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 178 EPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEE 239
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-179 |
8.51e-13 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 67.65 E-value: 8.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFkGESIvglkpyQIAAKGITR 83
Cdd:TIGR03719 322 VIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV------KLAYVDQSR 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 TfqniRLFGELSVLENVliarhlhvpyNMMHAIFRLGKFyrgekEMRDEAYelLKIMNLAHKAEEK-AKNLPYGEQRRLE 162
Cdd:TIGR03719 395 D----ALDPNKTVWEEI----------SGGLDIIKLGKR-----EIPSRAY--VGRFNFKGSDQQKkVGQLSGGERNRVH 453
|
170
....*....|....*..
gi 694165643 163 IARALATHPSLLLLDEP 179
Cdd:TIGR03719 454 LAKTLKSGGNVLLLDEP 470
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
4-211 |
1.00e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 65.82 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTG--IYLPTTGDIIFKGESIVGLKPYQIAAKGI 81
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESILDLEPEERAHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQN-IRLFGelsvlenVLIARHLHVPYNMMHaifrlgKFYrGEKEMRD-EAYEL----LKIMNLAHKAEEKAKNLPY 155
Cdd:CHL00131 87 FLAFQYpIEIPG-------VSNADFLRLAYNSKR------KFQ-GLPELDPlEFLEIinekLKLVGMDPSFLSRNVNEGF 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 156 --GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNmTILLIEH 211
Cdd:CHL00131 153 sgGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITH 209
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
20-240 |
1.35e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 66.70 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvglkpYQIAAKGITRTF----QNIRLFgELS 95
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL-----SQWDREELGRHIgylpQDVELF-DGT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENvlIArhlhvpynmmhaifRLGkfyrgekEMRDE----------AYELlkIMNLAH----KAEEKAKNLPYGEQRRL 161
Cdd:COG4618 422 IAEN--IA--------------RFG-------DADPEkvvaaaklagVHEM--ILRLPDgydtRIGEGGARLSGGQRQRI 476
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 162 EIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRgKFNMTILLIEHDMHLvMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4618 477 GLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALK-ARGATVVVITHRPSL-LAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
14-241 |
1.71e-12 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 66.30 E-value: 1.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTvFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLfGE 93
Cdd:NF000106 23 FGEVKAVDGVDLDVREGTVLGVLGP*GAA**R-GALPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*HRPVR*GRR-ES 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVLENV-LIARHLHVpynmmhaifrlgkfyrGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPS 172
Cdd:NF000106 101 FSGRENLyMIGR*LDL----------------SRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 173 LLLLDEPAAGMNPRETTELM-ELIDFIRGkfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIK 241
Cdd:NF000106 165 VLYLDEPTTGLDPRTRNEVWdEVRSMVRD--GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELK 232
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
19-240 |
7.83e-12 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 64.65 E-value: 7.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesiVGLKPYQIAA--KGITRTFQNIRLFGElSV 96
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG---HDLRDYTLASlrNQVALVSQNVHLFND-TI 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLIARHlhvpynmmhaifrlGKFYRGEKEmrdEAYELLKIMNLAHKAE--------EKAKNLPYGEQRRLEIARALA 168
Cdd:PRK11176 434 ANNIAYART--------------EQYSREQIE---EAARMAYAMDFINKMDngldtvigENGVLLSGGQRQRIAIARALL 496
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 169 THPSLLLLDEPAAGMNPRETTELMELIDFIRGkfNMTILLIEHDMHLVMNICErIYVLDYGVNIAHGTPEEI 240
Cdd:PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEKADE-ILVVEDGEIVERGTHAEL 565
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-240 |
1.36e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.11 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISF----GGLKAVQDLNLTLNEGDLVGLIGPNGAGKT-TVFNLLTgiYLPTTGDIIFKGESIVGLKPYQIAA 78
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMR--LLEQAGGLVQCDKMLLRRRSRQVIE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 79 KGITRTFQNIRLFGelsvlenVLIARHLHVPYNMMHAIF----------RLGKFYRGEKEMRdEAYELLKIMNLAhKAEE 148
Cdd:PRK10261 90 LSEQSAAQMRHVRG-------ADMAMIFQEPMTSLNPVFtvgeqiaesiRLHQGASREEAMV-EAKRMLDQVRIP-EAQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 149 KAKNLPY----GEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIY 224
Cdd:PRK10261 161 ILSRYPHqlsgGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
|
250
....*....|....*.
gi 694165643 225 VLDYGVNIAHGTPEEI 240
Cdd:PRK10261 241 VMYQGEAVETGSVEQI 256
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
20-240 |
1.79e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.81 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLF-GELSVle 98
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK-ITIIPQDPVLFsGSLRM-- 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 nvliarhlhvpynmmhaifRLGKFYRGEKEMRDEAYELLKIMN--------LAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:TIGR00957 1379 -------------------NLDPFSQYSDEEVWWALELAHLKTfvsalpdkLDHECAEGGENLSVGQRQLVCLARALLRK 1439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 171 PSLLLLDEPAAGMNpRETTELMELIdfIRGKF-NMTILLIEHDMHLVMNIcERIYVLDYGVNIAHGTPEEI 240
Cdd:TIGR00957 1440 TKILVLDEATAAVD-LETDNLIQST--IRTQFeDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNL 1506
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-239 |
2.14e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.42 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAV-QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIylpttgDIIFKGESIvglkpyqiAAKGIT 82
Cdd:TIGR03719 4 IYTMNRVSKVVPPKKEIlKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------DKDFNGEAR--------PQPGIK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 RTF--QNIRLFGELSVLENVLIA----RHLHVPYNMMHAIF-----RLGKFYRGEKEMRDE-----AYELLKIMNLAHKA 146
Cdd:TIGR03719 70 VGYlpQEPQLDPTKTVRENVEEGvaeiKDALDRFNEISAKYaepdaDFDKLAAEQAELQEIidaadAWDLDSQLEIAMDA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 147 ------EEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPrETTELME--LIDFiRGkfnmTILLIEHDMHLVMN 218
Cdd:TIGR03719 150 lrcppwDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA-ESVAWLErhLQEY-PG----TVVAVTHDRYFLDN 223
|
250 260
....*....|....*....|.
gi 694165643 219 ICERIYVLDYGvniaHGTPEE 239
Cdd:TIGR03719 224 VAGWILELDRG----RGIPWE 240
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
19-223 |
2.86e-11 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 61.76 E-value: 2.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglkpyqIAAkgitrtfqNIRLFGELSVLE 98
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV------IAI--------SAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NvliarhlhVPYNMMHAIFRlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK13546 105 N--------IEFKMLCMGFK-------RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 694165643 179 PAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERI 223
Cdd:PRK13546 170 ALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKI 213
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
21-240 |
3.68e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 62.81 E-value: 3.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKpYQIAAKGITRTFQNIRLFGElSVLENV 100
Cdd:PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLRQGVAMVQQDPVVLAD-TFLANV 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 101 LIARHL--HVPYNMMHAIfRLGKFYRGekeMRDEAYELLKimnlahkaeEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK10790 436 TLGRDIseEQVWQALETV-QLAELARS---LPDGLYTPLG---------EQGNNLSVGQKQLLALARVLVQTPQILILDE 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 694165643 179 PAAGMNPRETTELMELIDFIRGKfnMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK10790 503 ATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQL 561
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
20-215 |
3.94e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 60.73 E-value: 3.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI-VGLKPYQiaaKGITRTFQNIRLFGELSVLE 98
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIkKDLCTYQ---KQLCFVGHRSGINPYLTLRE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIARHlhvpynmmhaifrlgkFYRGEKEMRdeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK13540 94 NCLYDIH----------------FSPGAVGIT----ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 694165643 179 PAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHL 215
Cdd:PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
23-239 |
4.05e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 62.51 E-value: 4.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVG--LKPY--QIAAkgitrTFQNIRLFGELsvle 98
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTAdnREAYrqLFSA-----VFSDFHLFDRL---- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 nvliarhlhvpynmmhaifrLGkfyRGEKEMRDEAYELLKIMNLAHKAEEKAK-----NLPYGEQRRLEIARALATHPSL 173
Cdd:COG4615 422 --------------------LG---LDGEADPARARELLERLELDHKVSVEDGrfsttDLSQGQRKRLALLVALLEDRPI 478
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 174 LLLDEPAAGMNP--RE---TTELMELIDfiRGKfnmTILLIEHD---MHLvmniCERIYVLDYG--VNIAHGTPEE 239
Cdd:COG4615 479 LVFDEWAADQDPefRRvfyTELLPELKA--RGK---TVIAISHDdryFDL----ADRVLKMDYGklVELTGPAALA 545
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
19-229 |
5.07e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 62.18 E-value: 5.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIrlFGELSv 96
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAlrRDIQFIFQDP--YASLD- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 lenvliARHLhVPYNMMHAIfRLGKFYRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLL 176
Cdd:PRK10261 416 ------PRQT-VGDSIMEPL-RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 694165643 177 DEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
23-250 |
7.96e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 60.33 E-value: 7.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIyLPTTGDIIFKGESIVGLKPYQIAakgitrtfqniRLFGELSVLENVLI 102
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELA-----------RHRAYLSQQQTPPF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 103 ARH------LHVPYNmmhaifrlgkfyRGEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRR-------LEIARALAT 169
Cdd:PRK03695 83 AMPvfqyltLHQPDK------------TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 170 HPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRVIEA 249
Cdd:PRK03695 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQV 229
|
.
gi 694165643 250 Y 250
Cdd:PRK03695 230 F 230
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
19-240 |
1.22e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.90 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKG---ITRTFQNIRLFGELS 95
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGfalVTEERRSTGIYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 96 VLENVLIArhlhvpyNMMHAIFRLGKFyrGEKEMRDEAYELLKIMNL---AHKAeeKAKNLPYGEQRRLEIARALATHPS 172
Cdd:PRK10982 343 IGFNSLIS-------NIRNYKNKVGLL--DNSRMKSDTQWVIDSMRVktpGHRT--QIGSLSGGNQQKVIIGRWLLTQPE 411
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYG-----VNIAHGTPEEI 240
Cdd:PRK10982 412 ILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGlvagiVDTKTTTQNEI 483
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
21-186 |
2.05e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.82 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKgesIVGLKPYQiaakgitrtfqnirlfgELSVLENv 100
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVD---VPDNQFGR-----------------EASLIDA- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 101 liarhlhvpynmmhaIFRLGKFyrgekemrDEAYELLKIMNLAHKAEEKAK--NLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:COG2401 106 ---------------IGRKGDF--------KDAVELLNAVGLSDAVLWLRRfkELSTGQKFRFRLALLLAERPKLLVIDE 162
|
....*...
gi 694165643 179 PAAGMNPR 186
Cdd:COG2401 163 FCSHLDRQ 170
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
156-251 |
2.13e-10 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 60.61 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARALATHPS--LLLLDEPAAGMNPRETTELMELIDFIRGKFNmTILLIEHDMHLVmNICERIYVLDYGVNI- 232
Cdd:PRK00635 480 GEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGN-TVLLVEHDEQMI-SLADRIIDIGPGAGIf 557
|
90 100
....*....|....*....|....*
gi 694165643 233 -----AHGTPEEIKNNSRVIEA-YL 251
Cdd:PRK00635 558 ggevlFNGSPREFLAKSDSLTAkYL 582
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
13-179 |
2.55e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.13 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFkGESIvglkpyQIAAKGITRTfqniRLFG 92
Cdd:PRK11819 333 SFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV------KLAYVDQSRD----ALDP 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVliarhlhvpyNMMHAIFRLGKFyrgekEMRDEAYellkIMNLAHKA---EEKAKNLPYGEQRRLEIARALAT 169
Cdd:PRK11819 402 NKTVWEEI----------SGGLDIIKVGNR-----EIPSRAY----VGRFNFKGgdqQKKVGVLSGGERNRLHLAKTLKQ 462
|
170
....*....|
gi 694165643 170 HPSLLLLDEP 179
Cdd:PRK11819 463 GGNVLLLDEP 472
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
18-237 |
2.55e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 58.58 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLkPYQIAAKGITRTFQNIRLFGElSVL 97
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI-PLEDLRSSLTIIPQDPTLFSG-TIR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVliarhlhVPYNMMHaifrlgkfyrgekemRDEAYELLKImnlahkaEEKAKNLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:cd03369 100 SNL-------DPFDEYS---------------DEEIYGALRV-------SEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 178 EPAAGMNPRETTELMELidfIRGKF-NMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTP 237
Cdd:cd03369 151 EATASIDYATDALIQKT---IREEFtNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
23-245 |
2.99e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 60.14 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglkpYQIAAKGITRTFQNIRLFGELSVLENVLI 102
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG--------CDISKFGLMDLRKVLGIIPQAPVLFSGTV 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 103 ARHLHvPYNMmHAIFRLGkfyrgEKEMRDEAYELLKIMNLAHKAE--EKAKNLPYGEQRRLEIARALATHPSLLLLDEPA 180
Cdd:PLN03130 1330 RFNLD-PFNE-HNDADLW-----ESLERAHLKDVIRRNSLGLDAEvsEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 181 AGMNPReTTELMEliDFIRGKF-NMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEIKNNSR 245
Cdd:PLN03130 1403 AAVDVR-TDALIQ--KTIREEFkSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-227 |
5.05e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 59.03 E-value: 5.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 26 TLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifKGESIVGLKPyqiaakgitrtfQNIRLFGELSVLEnvLIARH 105
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEV--DEDLKISYKP------------QYISPDYDGTVEE--FLRSA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 106 LHVPYNmmhaifrlGKFYRGekemrdeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNP 185
Cdd:COG1245 426 NTDDFG--------SSYYKT---------EIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 488
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 694165643 186 RETTELMELID-FIRGKfNMTILLIEHDMHLVMNICERIYVLD 227
Cdd:COG1245 489 EQRLAVAKAIRrFAENR-GKTAMVVDHDIYLIDYISDRLMVFE 530
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
4-184 |
1.01e-09 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 57.11 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGI--YLPTTGDIIFKGESIVGLKPYQIAAKGI 81
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 82 TRTFQNIRlfgELSVLENVLIarhLHVPYNMMHAifrlgkfYRGEKEM-----RDEAYELLKIMNLAHKAEEKAKNLPY- 155
Cdd:PRK09580 81 FMAFQYPV---EIPGVSNQFF---LQTALNAVRS-------YRGQEPLdrfdfQDLMEEKIALLKMPEDLLTRSVNVGFs 147
|
170 180 190
....*....|....*....|....*....|
gi 694165643 156 -GEQRRLEIARALATHPSLLLLDEPAAGMN 184
Cdd:PRK09580 148 gGEKKRNDILQMAVLEPELCILDESDSGLD 177
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
12-185 |
1.05e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 58.10 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 12 ISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYlPT--TGDIIF------KGESIVGLKpyqiaakgitr 83
Cdd:PRK10938 268 VSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQgySNDLTLfgrrrgSGETIWDIK----------- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 84 tfQNIrlfGELSvlenvliaRHLHVPY----NMMHAIFRlGKF-----YRGEKE-MRDEAYELLKIMNL-AHKAEEKAKN 152
Cdd:PRK10938 336 --KHI---GYVS--------SSLHLDYrvstSVRNVILS-GFFdsigiYQAVSDrQQKLAQQWLDILGIdKRTADAPFHS 401
|
170 180 190
....*....|....*....|....*....|...
gi 694165643 153 LPYGEQRRLEIARALATHPSLLLLDEPAAGMNP 185
Cdd:PRK10938 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDP 434
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
20-240 |
1.19e-09 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 57.16 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIyLPTTGDIIFKGESIVGLKPYQIAAKgitRTF--QNIRLFGELSVL 97
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWSAAELARH---RAYlsQQQSPPFAMPVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 EnvLIARHLHVPYNmmhaifrlgkfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARA-LATHPS---- 172
Cdd:COG4138 88 Q--YLALHQPAGAS--------------SEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVlLQVWPTinpe 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 173 --LLLLDEPAAGMNPRETTELMELIdfirGKF---NMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:COG4138 152 gqLLLLDEPMNSLDVAQQAALDRLL----RELcqqGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-227 |
1.65e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 57.51 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 26 TLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGEsiVGLKPYQIAAKgitrtfqnirlfgelsvlenvliarh 105
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK--ISYKPQYIKPD-------------------------- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 106 lhvpYNMmhaifRLGKFYRGEKEMRDEAY---ELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAG 182
Cdd:PRK13409 413 ----YDG-----TVEDLLRSITDDLGSSYyksEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 694165643 183 MNPRETTELMELID-FIRGKfNMTILLIEHDMHLVMNICERIYVLD 227
Cdd:PRK13409 484 LDVEQRLAVAKAIRrIAEER-EATALVVDHDIYMIDYISDRLMVFE 528
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-245 |
2.01e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 56.90 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAA--KGITRTFQNIrlFGEL 94
Cdd:PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLlrQKIQIVFQNP--YGSL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 -------SVLENVLiarhlhvpynmmhAI-FRLGKFYRGEKemrdeayeLLKIMNLAHKAEEKAKNLPY---GEQR-RLE 162
Cdd:PRK11308 106 nprkkvgQILEEPL-------------LInTSLSAAERREK--------ALAMMAKVGLRPEHYDRYPHmfsGGQRqRIA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKN 242
Cdd:PRK11308 165 IARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
|
...
gi 694165643 243 NSR 245
Cdd:PRK11308 245 NPR 247
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
11-226 |
2.18e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 57.23 E-value: 2.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFGGLKavQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKGIT-----RTF 85
Cdd:PRK11288 262 GLKGPGLR--EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMlcpedRKA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 QNIrlFGELSVLENVLI-ARHLHVpynmmhaifRLGKFYRGEKEmRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK11288 340 EGI--IPVHSVADNINIsARRHHL---------RAGCLINNRWE-AENADRFIRSLNIkTPSREQLIMNLSGGNQQKAIL 407
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIdFIRGKFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI-YELAAQGVAVLFVSSDLPEVLGVADRIVVM 469
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
12-230 |
2.79e-09 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 56.88 E-value: 2.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 12 ISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVG-LK---P-------YQIAAKG 80
Cdd:PRK11147 11 LSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVArLQqdpPrnvegtvYDFVAEG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVL-ENVLIARHLHvpyNMMHAIFRLGkfYRGEKEMRDEAYELLKIMNLahKAEEKAKNLPYGEQR 159
Cdd:PRK11147 91 IEEQAEYLKRYHDISHLvETDPSEKNLN---ELAKLQEQLD--HHNLWQLENRINEVLAQLGL--DPDAALSSLSGGWLR 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 160 RLEIARALATHPSLLLLDEPAAGMNPrETTELMEliDFIRGkFNMTILLIEHDMHLVMNICERIYVLDYGV 230
Cdd:PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDI-ETIEWLE--GFLKT-FQGSIIFISHDRSFIRNMATRIVDLDRGK 230
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-237 |
2.95e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 56.74 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 26 TLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGD---------II--FKGESivgLKPYqiaakgitrtFQNIRLfGEL 94
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDyeeepswdeVLkrFRGTE---LQNY----------FKKLYN-GEI 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVlenvliarhLHVP-YnmmhaIFRLGKFYRG----------EKEMRDeayELLKIMNLAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK13409 161 KV---------VHKPqY-----VDLIPKVFKGkvrellkkvdERGKLD---EVVERLGLENILDRDISELSGGELQRVAI 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELI-DFIRGKfnmTILLIEHDMhlvmniceriYVLDY---GVNIAHGTP 237
Cdd:PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIrELAEGK---YVLVVEHDL----------AVLDYladNVHIAYGEP 288
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
8-241 |
2.95e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.06 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 8 HSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESI--------VGlkpYQIA-- 77
Cdd:NF033858 5 EGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMadarhrraVC---PRIAym 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKGITRtfqNirLFGELSVLENV-LIARhlhvpynmmhaIFRLGkfyRGEKEMRDEayELLKIMNLAHKAEEKAKNLPYG 156
Cdd:NF033858 82 PQGLGK---N--LYPTLSVFENLdFFGR-----------LFGQD---AAERRRRID--ELLRATGLAPFADRPAGKLSGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKF-NMTILLIEHDM-------HLVMniceriyvLDY 228
Cdd:NF033858 141 MKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERpGMSVLVATAYMeeaerfdWLVA--------MDA 212
|
250
....*....|...
gi 694165643 229 GVNIAHGTPEEIK 241
Cdd:NF033858 213 GRVLATGTPAELL 225
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
16-238 |
3.10e-09 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 56.04 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 16 GLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifkgeSIVGLkPYQIAAKG--ITRTFQNIRLFGE 93
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-----SILGQ-PTRQALQKnlVAYVPQSEEVDWS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 94 LSVL--ENVLIARHLHVpynmmhAIFRLGKfyRGEKEMRDEAYELLKIMNLAHKaeeKAKNLPYGEQRRLEIARALATHP 171
Cdd:PRK15056 93 FPVLveDVVMMGRYGHM------GWLRRAK--KRDRQIVTAALARVDMVEFRHR---QIGELSGGQKKRVFLARAIAQQG 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 172 SLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIyVLDYGVNIAHGTPE 238
Cdd:PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASGPTE 226
|
|
| BCA_ABC_TP_C |
pfam12399 |
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in ... |
232-254 |
5.06e-09 |
|
Branched-chain amino acid ATP-binding cassette transporter; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains.
Pssm-ID: 463560 Cd Length: 25 Bit Score: 50.33 E-value: 5.06e-09
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
20-195 |
5.60e-09 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 55.97 E-value: 5.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIF-KGESIVGL--KPYQIaakgitrtfqnirlfgeLSV 96
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLpqRPYLP-----------------LGT 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLIarhlhvpynmmhaifrlgkfY-RGEKEMRDEAY-ELLKIMNLAHKA----EEK--AKNLPYGEQRRLEIARALA 168
Cdd:COG4178 442 LREALL--------------------YpATAEAFSDAELrEALEAVGLGHLAerldEEAdwDQVLSLGEQQRLAFARLLL 501
|
170 180
....*....|....*....|....*..
gi 694165643 169 THPSLLLLDEPAAGMNPRETTELMELI 195
Cdd:COG4178 502 HKPDWLFLDEATSALDEENEAALYQLL 528
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
23-243 |
5.80e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.52 E-value: 5.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglkpYQIAAKGITRTFQNIRLFGELSVLENVLI 102
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDD--------CDVAKFGLTDLRRVLSIIPQSPVLFSGTV 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 103 ArhlhvpynmmhaiFRLGKFYRGEKEMRDEAYELLKIMN--------LAHKAEEKAKNLPYGEQRRLEIARALATHPSLL 174
Cdd:PLN03232 1327 R-------------FNIDPFSEHNDADLWEALERAHIKDvidrnpfgLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 175 LLDEPAAGMNPReTTELMELIdfIRGKF-NMTILLIEHDMHLVMNiCERIYVLDYGVNIAHGTPEEIKNN 243
Cdd:PLN03232 1394 VLDEATASVDVR-TDSLIQRT--IREEFkSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
29-237 |
9.22e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.56 E-value: 9.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 29 EGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGD---------II--FKGEsivGLKPYqiaakgitrtFQNIRLfGELSVl 97
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDydeepswdeVLkrFRGT---ELQDY----------FKKLAN-GEIKV- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 envliarhLHVPynmmHAIFRLGKFYRGE-KEM------RDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATH 170
Cdd:COG1245 163 --------AHKP----QYVDLIPKVFKGTvRELlekvdeRGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRD 230
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIrGKFNMTILLIEHDMhlvmniceriYVLDY---GVNIAHGTP 237
Cdd:COG1245 231 ADFYFFDEPSSYLDIYQRLNVARLIREL-AEEGKYVLVVEHDL----------AILDYladYVHILYGEP 289
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
3-195 |
1.57e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 53.31 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 3 AILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGesivglKPYQIA--AKG 80
Cdd:PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG------KTATRGdrSRF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 ITRTFQNIRLFGELSVLENvliarhLHvpynmmhaiFRLGKFYRGEKEMRDEAyelLKIMNLAHKAEEKAKNLPYGEQRR 160
Cdd:PRK13543 84 MAYLGHLPGLKADLSTLEN------LH---------FLCGLHGRRAKQMPGSA---LAIVGLAGYEDTLVRQLSAGQKKR 145
|
170 180 190
....*....|....*....|....*....|....*
gi 694165643 161 LEIARALATHPSLLLLDEPAAGMNPRETTELMELI 195
Cdd:PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
11-192 |
1.77e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 54.85 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 11 GISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLL----TGIYLptTGDIifkgeSIVGLKPYQiaakgitRTFQ 86
Cdd:PLN03140 887 GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLagrkTGGYI--EGDI-----RISGFPKKQ-------ETFA 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 87 NIRLFGElsvlENVLIARHLHVPYNMMHAIF-RLGKFYRGEKEMR--DEAYELLKIMNLahkaEEKAKNLP-----YGEQ 158
Cdd:PLN03140 953 RISGYCE----QNDIHSPQVTVRESLIYSAFlRLPKEVSKEEKMMfvDEVMELVELDNL----KDAIVGLPgvtglSTEQ 1024
|
170 180 190
....*....|....*....|....*....|....*
gi 694165643 159 R-RLEIARALATHPSLLLLDEPAAGMNPRETTELM 192
Cdd:PLN03140 1025 RkRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
17-253 |
1.82e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 53.64 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 17 LKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIvGLKPYQIAAKGITRTFQNirlfGELSV 96
Cdd:PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQD----PSTSL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LENVLIARHLHVPynmmhaiFRLGKFYRGEkEMRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRRLEIARALATHPSLLL 175
Cdd:PRK15112 101 NPRQRISQILDFP-------LRLNTDLEPE-QREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVII 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 176 LDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI------KNNSRVIEA 249
Cdd:PRK15112 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVlasplhELTKRLIAG 252
|
....
gi 694165643 250 YLGE 253
Cdd:PRK15112 253 HFGE 256
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
21-245 |
2.03e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 54.65 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGE---SIVGLKPYQiaaKGITRTFQNIRLFG----- 92
Cdd:PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDShnlKDINLKWWR---SKIGVVSQDPLLFSnsikn 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ----------ELSVLENVL--------------------IARHLHVPYNMMHA--IFRLGKFYR--GEKEMRDEAYELLK 138
Cdd:PTZ00265 479 nikyslyslkDLEALSNYYnedgndsqenknkrnscrakCAGDLNDMSNTTDSneLIEMRKNYQtiKDSEVVDVSKKVLI 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 139 ---IMNLAHKAE----EKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEH 211
Cdd:PTZ00265 559 hdfVSALPDKYEtlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH 638
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 694165643 212 DMH--------LVMNICERIYVLDYGVNIAHGTPEEIKNNSR 245
Cdd:PTZ00265 639 RLStiryantiFVLSNRERGSTVDVDIIGEDPTKDNKENNNK 680
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
131-240 |
2.04e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 54.63 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 131 DEAYEL-LKIMNLAHKAE-------------EKAKNLPYGEQRRLEIARAL---ATHPSLLLLDEPAAGMNPRETTELME 193
Cdd:TIGR00630 794 EEAYEFfEAVPSISRKLQtlcdvglgyirlgQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLE 873
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 194 LIDFIRGKFNmTILLIEHDMHLVMNiceRIYVLDYGVN--------IAHGTPEEI 240
Cdd:TIGR00630 874 VLQRLVDKGN-TVVVIEHNLDVIKT---ADYIIDLGPEggdgggtvVASGTPEEV 924
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
15-179 |
2.75e-08 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 53.69 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPyqiAAKGITRTFQNIRLFGEL 94
Cdd:PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIAMVFQNYALYPHM 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLEnvliarhlhvpyNMMHAIfRLGKFYRGEKEMR-DEAYELLKIMNLahkAEEKAKNLPYGEQRRLEIARALATHPSL 173
Cdd:PRK11650 92 SVRE------------NMAYGL-KIRGMPKAEIEERvAEAARILELEPL---LDRKPRELSGGQRQRVAMGRAIVREPAV 155
|
....*.
gi 694165643 174 LLLDEP 179
Cdd:PRK11650 156 FLFDEP 161
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
19-245 |
2.93e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 53.74 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVglkpyqIAAKGitrtfqniRLFGELSVLE 98
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISS--------GLNGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIArhlhvpyNMMhaifrLGKFYRGEKEMRDEAYELLKIMNLAHkaeEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK13545 105 NIELK-------GLM-----MGLTKEKIKEIIPEIIEFADIGKFIY---QPVKTYSSGMKSRLGFAISVHINPDILVIDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 694165643 179 PAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSR 245
Cdd:PRK13545 170 ALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
13-218 |
3.46e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.80 E-value: 3.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 13 SFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifkgesIVGLKpYQIAakgitrTFQNIR--L 90
Cdd:PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI------HCGTK-LEVA------YFDQHRaeL 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGELSVLENVLIARHlHVPYN--MMHAIFRLGKFyrgekemrdeayellkimnLAH--KAEEKAKNLPYGEQRRLEIARA 166
Cdd:PRK11147 395 DPEKTVMDNLAEGKQ-EVMVNgrPRHVLGYLQDF-------------------LFHpkRAMTPVKALSGGERNRLLLARL 454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 694165643 167 LATHPSLLLLDEPAAGMNPrETTELME-LIDFIRGkfnmTILLIEHDMHLVMN 218
Cdd:PRK11147 455 FLKPSNLLILDEPTNDLDV-ETLELLEeLLDSYQG----TVLLVSHDRQFVDN 502
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-229 |
1.81e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.43 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 4 ILQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDI-IFKGESIVGLKPYQIAakgit 82
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVsLDPNERLGKLRQDQFA----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 83 rtfqnirlFGELSVLENVliarhlhvpynMMhaifrlgkfyrGEKEM------RDEAYEL--------LKIMNLAHK--- 145
Cdd:PRK15064 76 --------FEEFTVLDTV-----------IM-----------GHTELwevkqeRDRIYALpemseedgMKVADLEVKfae 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 146 -----AEEKAKNLPYG-----EQR-------------RLEIARALATHPSLLLLDEPaagmnpreTTELMelIDFIR--- 199
Cdd:PRK15064 126 mdgytAEARAGELLLGvgipeEQHyglmsevapgwklRVLLAQALFSNPDILLLDEP--------TNNLD--INTIRwle 195
|
250 260 270
....*....|....*....|....*....|...
gi 694165643 200 ---GKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK15064 196 dvlNERNSTMIIISHDRHFLNSVCTHMADLDYG 228
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
5-239 |
2.23e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 51.05 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 5 LQTHSLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgitrt 84
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD----- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 85 FQNirlfgELSVLENVLIARHLHVPYNMMHAIfrLGKFYRGEKEMRdeayellkimnlahkaeEKAKNLPYGEQRRLEIA 164
Cdd:PRK15064 395 FEN-----DLTLFDWMSQWRQEGDDEQAVRGT--LGRLLFSQDDIK-----------------KSVKVLSGGEKGRMLFG 450
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 165 RALATHPSLLLLDEPAAGMNprettelMELIDFIR---GKFNMTILLIEHDMHLVMNICERIY-VLDYGVNIAHGTPEE 239
Cdd:PRK15064 451 KLMMQKPNVLVMDEPTNHMD-------MESIESLNmalEKYEGTLIFVSHDREFVSSLATRIIeITPDGVVDFSGTYEE 522
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
33-239 |
2.75e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.89 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 33 VGLIGPNGAGKTTVFNLLTGIylpttgDIIFKGESIvglkpyqiAAKGITRTF--QNIRLFGELSVLENV---------L 101
Cdd:PRK11819 36 IGVLGLNGAGKSTLLRIMAGV------DKEFEGEAR--------PAPGIKVGYlpQEPQLDPEKTVRENVeegvaevkaA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 102 IARhlhvpYNMMHAifrlgKFYRGEKEMR---DEAYELLKIM------NLAHKAE------------EKAKNLPYGEQRR 160
Cdd:PRK11819 102 LDR-----FNEIYA-----AYAEPDADFDalaAEQGELQEIIdaadawDLDSQLEiamdalrcppwdAKVTKLSGGERRR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 161 LEIARALATHPSLLLLDEP-----AagmnprETTELME--LIDFiRGkfnmTILLIEHDMHLVMNICERIYVLDYGvnia 233
Cdd:PRK11819 172 VALCRLLLEKPDMLLLDEPtnhldA------ESVAWLEqfLHDY-PG----TVVAVTHDRYFLDNVAGWILELDRG---- 236
|
....*.
gi 694165643 234 HGTPEE 239
Cdd:PRK11819 237 RGIPWE 242
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
147-229 |
3.02e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 49.24 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 147 EEKAKNLPYGEQRRLEIARALA--THPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNmTILLIEHDMHLvmnICERIY 224
Cdd:cd03238 82 GQKLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN-TVILIEHNLDV---LSSADW 157
|
....*
gi 694165643 225 VLDYG 229
Cdd:cd03238 158 IIDFG 162
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
30-195 |
5.09e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.78 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 30 GDLVGLIGPNGAGKTTVFNLLTGiyLPTTGDIifKGESIVGLKPYQIA-AKGITRTFQNIRLFGELSVLENVLIARHLhv 108
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLAG--RKTAGVI--TGEILINGRPLDKNfQRSTGYVEQQDVHSPNLTVREALRFSALL-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 109 pynmmhaifrlgkfyRGekemrdeayellkimnlahkaeekaknLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRET 188
Cdd:cd03232 107 ---------------RG---------------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144
|
....*..
gi 694165643 189 TELMELI 195
Cdd:cd03232 145 YNIVRFL 151
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
21-240 |
5.88e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.41 E-value: 5.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIY-LPTTGDIIFKGESI----------------VGLK------PYQIA 77
Cdd:PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYdLKNDHHIVFKNEHTndmtneqdyqgdeeqnVGMKnvnefsLTKEG 1264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 78 AKGITRT-FQN---IRLFG------ELSVLENVL-IARHLHVPYNMmhAIFRLGKFYRgEKEMRDEAYELLK-------I 139
Cdd:PTZ00265 1265 GSGEDSTvFKNsgkILLDGvdicdyNLKDLRNLFsIVSQEPMLFNM--SIYENIKFGK-EDATREDVKRACKfaaidefI 1341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 140 MNLAHKAEEK----AKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHL 215
Cdd:PTZ00265 1342 ESLPNKYDTNvgpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS 1421
|
250 260 270
....*....|....*....|....*....|
gi 694165643 216 VMNiCERIYVLD----YGVNI-AHGTPEEI 240
Cdd:PTZ00265 1422 IKR-SDKIVVFNnpdrTGSFVqAHGTHEEL 1450
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
22-178 |
8.62e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 48.33 E-value: 8.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 22 DLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGL-KPYqiaakgITRTFQNIRLFGELSVLENV 100
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIaKPY------CTYIGHNLGLKLEMTVFENL 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 101 LIARHLhvpYNMMHAIFRLGKFYRgekemrdeAYELLkimnlahkaEEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK13541 92 KFWSEI---YNSAETLYAAIHYFK--------LHDLL---------DEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
21-229 |
1.07e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 47.85 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 21 QDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGE-SIVGLKPYqiaakgitrtFQNirlfgeLSVLEN 99
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSiAYVSQEPW----------IQN------GTIREN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 100 VLiarhLHVPYNMmhaifrlgKFYrgEKEMRDEAYEL-LKIMNLAHKAE--EKAKNLPYGEQRRLEIARALATHPSLLLL 176
Cdd:cd03250 86 IL----FGKPFDE--------ERY--EKVIKACALEPdLEILPDGDLTEigEKGINLSGGQKQRISLARAVYSDADIYLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 694165643 177 DEPAAGMNPRETTELMEliDFIRG--KFNMTILLIEHDMHLVMNiCERIYVLDYG 229
Cdd:cd03250 152 DDPLSAVDAHVGRHIFE--NCILGllLNNKTRILVTHQLQLLPH-ADQIVVLDNG 203
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
156-240 |
1.92e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 48.67 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARAL---ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVmNICEriYVLDYGVN- 231
Cdd:PRK00635 813 GEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVAD--YVLELGPEg 888
|
90
....*....|....*.
gi 694165643 232 -------IAHGTPEEI 240
Cdd:PRK00635 889 gnlggylLASCSPEEL 904
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
147-252 |
1.97e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.47 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 147 EEKAKNLPYGEQRRLeiarALATHPS------LLLLDEPAAGMNPRETTELMELIDFIRGKFNmTILLIEHDMhlvmnic 220
Cdd:TIGR00630 483 SRAAGTLSGGEAQRI----RLATQIGsgltgvLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN-TLIVVEHDE------- 550
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 694165643 221 ERIYVLDYGVNI------------AHGTPEEIKNNSRVIE-AYLG 252
Cdd:TIGR00630 551 DTIRAADYVIDIgpgagehggevvASGTPEEILANPDSLTgQYLS 595
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
18-229 |
2.21e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 48.28 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPT-TGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLFGELSV 96
Cdd:TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 97 LEnvliarhlhVPYNMMHAIfrLGKFyrgEKEMR-DEAYELLKIMNLAHKAEEKAKN-------LPYGEQRRLEIARALA 168
Cdd:TIGR02633 354 LG---------VGKNITLSV--LKSF---CFKMRiDAAAELQIIGSAIQRLKVKTASpflpigrLSGGNQQKAVLAKMLL 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 169 THPSLLLLDEPAAGMNPRETTELMELIdFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:TIGR02633 420 TNPRVLILDEPTRGVDVGAKYEIYKLI-NQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
23-226 |
2.63e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.86 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 23 LNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIifkgesivGLkpyqiaAKGITRTFqnirlfgelsvlenvlI 102
Cdd:PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI--------GL------AKGIKLGY----------------F 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 103 ARH----LHVPYNMMHAIFRLGKfYRGEKEMRDeayELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLDE 178
Cdd:PRK10636 381 AQHqlefLRADESPLQHLARLAP-QELEQKLRD---YLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 694165643 179 PAAGMNPRETTELME-LIDfirgkFNMTILLIEHDMHLVMNICERIYVL 226
Cdd:PRK10636 457 PTNHLDLDMRQALTEaLID-----FEGALVVVSHDRHLLRSTTDDLYLV 500
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
18-229 |
3.09e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 47.62 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYlP--TTGDIIFKGESIVGLKPYQIAAKGITRTFQNIRLFG--- 92
Cdd:PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PgrWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGivp 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIARhlhvpynmmhaifrLGKFYRGEkeMRDEAYEL---------LKIMnlAHKAEEKAKNLPYGEQRRLEI 163
Cdd:PRK13549 355 VMGVGKNITLAA--------------LDRFTGGS--RIDDAAELktilesiqrLKVK--TASPELAIARLSGGNQQKAVL 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELIdFIRGKFNMTILLIEHDMHLVMNICERIYVLDYG 229
Cdd:PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLI-NQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
156-212 |
7.93e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 45.71 E-value: 7.93e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 156 GEQRRLEIARALATHPS--LLLLDEPAAGMNPRETTELMELIDFIRGKFNmTILLIEHD 212
Cdd:cd03270 141 GEAQRIRLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRDLGN-TVLVVEHD 198
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
27-227 |
8.57e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.87 E-value: 8.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 27 LNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVgLKPyqiaakgitrtfQNIRLFGelsvlenvliarhl 106
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKP------------QYIDLSG-------------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 107 hvpynmmhaifrlgkfyrgekemrdeayellkimnlahkaeekaknlpyGEQRRLEIARALATHPSLLLLDEPAAGMNPR 186
Cdd:cd03222 75 -------------------------------------------------GELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 694165643 187 ETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLD 227
Cdd:cd03222 106 QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
19-178 |
9.01e-06 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 46.24 E-value: 9.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 19 AVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAAKgITRTFQNIRLFGElSVLE 98
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSD-TVAN 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 99 NVLIARHLHVPYNMMHA---------IFRLGKFYRGEkemrdeayellkimnlahkAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:PRK10789 408 NIALGRPDATQQEIEHVarlasvhddILRLPQGYDTE-------------------VGERGVMLSGGQKQRISIARALLL 468
|
....*....
gi 694165643 170 HPSLLLLDE 178
Cdd:PRK10789 469 NAEILILDD 477
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
15-241 |
9.16e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 46.39 E-value: 9.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGdIIFKgesivglkpyqiAAKGITRTFQNIRLFGeL 94
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFR------------SAKVRMAVFSQHHVDG-L 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIArhlhvpynMMHAifrlgkfYRG--EKEMRDEAYELLKIMNLAHKAeekAKNLPYGEQRRLEIARALATHPS 172
Cdd:PLN03073 586 DLSSNPLLY--------MMRC-------FPGvpEQKLRAHLGSFGVTGNLALQP---MYTLSGGQKSRVAFAKITFKKPH 647
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 173 LLLLDEPAAGMNPRETTELMELIDFIRGKfnmtILLIEHDMHLVMNICERIYVLDYG-VNIAHGTPEEIK 241
Cdd:PLN03073 648 ILLLDEPSNHLDLDAVEALIQGLVLFQGG----VLMVSHDEHLISGSVDELWVVSEGkVTPFHGTFHDYK 713
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
30-184 |
1.28e-05 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 46.03 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 30 GDLVGLIGPNGAGKTTVFNLLTGIYLPT--TGDIIFKGEsivglKPYQIAAKGITRTFQNIRLFGELSVLENVLIARHLH 107
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNR-----KPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 108 VPYNMMhaifrlgkfyRGEKEMRDEAyeLLKIMNLAhKAEEKA------KNLPYGEQRRLEIARALATHPSLLLLDEPAA 181
Cdd:PLN03211 169 LPKSLT----------KQEKILVAES--VISELGLT-KCENTIignsfiRGISGGERKRVSIAHEMLINPSLLILDEPTS 235
|
...
gi 694165643 182 GMN 184
Cdd:PLN03211 236 GLD 238
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
8-213 |
1.43e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.09 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 8 HSLGISFGGLKAVQDLNLTLN-------EGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGEsiVGLKPYQIaakg 80
Cdd:TIGR00957 635 NSITVHNATFTWARDLPPTLNgitfsipEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--VAYVPQQA---- 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 81 itrTFQNIrlfgelSVLENVLIARHLHVPY--NMMHAIFRLGKfyrgekemrdeayelLKIMNLAHKAE--EKAKNLPYG 156
Cdd:TIGR00957 709 ---WIQND------SLRENILFGKALNEKYyqQVLEACALLPD---------------LEILPSGDRTEigEKGVNLSGG 764
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 694165643 157 EQRRLEIARALATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKF-NMTILLIEHDM 213
Cdd:TIGR00957 765 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLkNKTRILVTHGI 822
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-237 |
1.86e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 44.66 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 29 EGDLVGLIGPNGAGKTTVFNLLTGIYLPTTG---------DII--FKGESivgLKPYqiaakgitrtFQNIRlFGELSVL 97
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGkfddppdwdEILdeFRGSE---LQNY----------FTKLL-EGDVKVI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 98 ENVLIARHLhvPYNMMHAIFRLGKfyrgEKEMRDEAYELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:cd03236 91 VKPQYVDLI--PKAVKGKVGELLK----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 694165643 178 EPAAGMNPRETTELMELIDFIRGKFNmTILLIEHDMHlvmniceriyVLDY---GVNIAHGTP 237
Cdd:cd03236 165 EPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLA----------VLDYlsdYIHCLYGEP 216
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
14-182 |
5.54e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 43.02 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 14 FGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGI---YLPTTGDIIFKGesivglkpyqIAAKGITRTFQnirl 90
Cdd:cd03233 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtegNVSVEGDIHYNG----------IPYKEFAEKYP---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 fGELS-VLENvliarHLHVPYNMMhaifrlgkfyrgeKEMRDEAYELlkimnlahKAEEKAKNLPYGEQRRLEIARALAT 169
Cdd:cd03233 83 -GEIIyVSEE-----DVHFPTLTV-------------RETLDFALRC--------KGNEFVRGISGGERKRVSIAEALVS 135
|
170
....*....|...
gi 694165643 170 HPSLLLLDEPAAG 182
Cdd:cd03233 136 RASVLCWDNSTRG 148
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
24-246 |
7.60e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.46 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 24 NLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGESIVGLKPYQIAaKGITRTFQ--NIRLfgeLSVLENvl 101
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ-KLVSDEWQrnNTDM---LSPGED-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 102 iarhlhvpynmmhaifRLGKFYRG--EKEMRDEA--YELLKIMNLAHKAEEKAKNLPYGEQRRLEIARALATHPSLLLLD 177
Cdd:PRK10938 97 ----------------DTGRTTAEiiQDEVKDPArcEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 178 EPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEIKNNSRV 246
Cdd:PRK10938 161 EPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALV 228
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
20-211 |
1.73e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 40.99 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIfkgesivglKPyqiaakgitrtfqnirlfgelsVLEN 99
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG---------MP----------------------EGED 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 100 VL-IARHlhvPYnmmhaifrlgkFYRGekEMRDE-AYELLKIMNLahkaeekaknlpyGEQRRLEIARALATHPSLLLLD 177
Cdd:cd03223 66 LLfLPQR---PY-----------LPLG--TLREQlIYPWDDVLSG-------------GEQQRLAFARLLLHKPKFVFLD 116
|
170 180 190
....*....|....*....|....*....|....
gi 694165643 178 EPAAGMNPRETTELMELIDfirgKFNMTILLIEH 211
Cdd:cd03223 117 EATSALDEESEDRLYQLLK----ELGITVISVGH 146
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
9-223 |
1.89e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.46 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 9 SLGISFGGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIFKGE---SIVGLKPYQIAAKGITRTF 85
Cdd:PRK10636 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlAWVNQETPALPQPALEYVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 86 QNIRLFGElsvLENVLIARHLHvpyNMMHAIFRL-GKFYRGEK-EMRDEAYELLKIMNLAH-KAEEKAKNLPYGEQRRLE 162
Cdd:PRK10636 86 DGDREYRQ---LEAQLHDANER---NDGHAIATIhGKLDAIDAwTIRSRAASLLHGLGFSNeQLERPVSDFSGGWRMRLN 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 694165643 163 IARALATHPSLLLLDEPAagmNPRETTELMELIDFIRGkFNMTILLIEHDMHLVMNICERI 223
Cdd:PRK10636 160 LAQALICRSDLLLLDEPT---NHLDLDAVIWLEKWLKS-YQGTLILISHDRDFLDPIVDKI 216
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
20-240 |
2.62e-04 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 41.22 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 20 VQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIyLP-----TTGDIIFKGESIVglkPYQIAAKGITRTFQNIRlfgel 94
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-LPagvrqTAGRVLLDGKPVA---PCALRGRKIATIMQNPR----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 95 SVLENVLIARHlhvpynmmHAIFRLGKfyRGEKEMRDEAYELLKIMNLAhKAEEKAKNLPY----GEQRRLEIARALATH 170
Cdd:PRK10418 90 SAFNPLHTMHT--------HARETCLA--LGKPADDATLTAALEAVGLE-NAARVLKLYPFemsgGMLQRMMIALALLCE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 171 PSLLLLDEPAAGMNPRETTELMELIDFIRGKFNMTILLIEHDMHLVMNICERIYVLDYGVNIAHGTPEEI 240
Cdd:PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
12-195 |
3.60e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 41.11 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 12 ISFGGLKAVQDLNLTLneGDLVGLIGPNGAGKTTVFNLLtgiYLPTTGDIIFKGESIVGLKPYQiaaKGITRTFQNIRLF 91
Cdd:COG4938 4 ISIKNFGPFKEAELEL--KPLTLLIGPNGSGKSTLIQAL---LLLLQSNFIYLPAERSGPARLY---PSLVRELSDLGSR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 92 GELSV--LENVLIARHLHVPYNMMHAIF--RLGKFYRGEKEMRDEAYELLKIMNLAHKAEE-KAKNLPYGEQRRLEI--- 163
Cdd:COG4938 76 GEYTAdfLAELENLEILDDKSKELLEQVeeWLEKIFPGKVEVDASSDLVRLVFRPSGNGKRiPLSNVGSGVSELLPIlla 155
|
170 180 190
....*....|....*....|....*....|..
gi 694165643 164 ARALATHPSLLLLDEPAAGMNPRETTELMELI 195
Cdd:COG4938 156 LLSAAKPGSLLIIEEPEAHLHPKAQSALAELL 187
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
15-227 |
5.53e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 41.05 E-value: 5.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 15 GGLKAVQDLNLTLNEGDLVGLIGPNGAGKTTVFNLLTGIyLPTTGDIIFKGES--IVGLKPYQIAakgitrtfqnirlFG 92
Cdd:TIGR01271 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSwnSVTLQTWRKA-------------FG 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 elSVLENVLIarhlhvpynmMHAIFR--LGKFYR-GEKEMRDEAYEL-LKIM------NLAHKAEEKAKNLPYGEQRRLE 162
Cdd:TIGR01271 1296 --VIPQKVFI----------FSGTFRknLDPYEQwSDEEIWKVAEEVgLKSVieqfpdKLDFVLVDGGYVLSNGHKQLMC 1363
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 694165643 163 IARALATHPSLLLLDEPAAGMNPretTELMELIDFIRGKF-NMTILLIEHDMHLVMNiCERIYVLD 227
Cdd:TIGR01271 1364 LARSILSKAKILLLDEPSAHLDP---VTLQIIRKTLKQSFsNCTVILSEHRVEALLE-CQQFLVIE 1425
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
148-214 |
1.15e-03 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 39.24 E-value: 1.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 694165643 148 EKAKNLPYGEQRRLEIARALATHPSLLLLDEPAAGMNPRETTELME--LIDFIRGKfNMTILLIEHDMH 214
Cdd:cd03290 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQegILKFLQDD-KRTLVLVTHKLQ 203
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
18-240 |
1.54e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.39 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEGDLVGLIGPNGAGKT----TVFNLLTGIYlpTTGDIIFKGESIVGLKPYQIAAKGI---TRTFQNIRL 90
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTelamSVFGRSYGRN--ISGTVFKDGKEVDVSTVSDAIDAGLayvTEDRKGYGL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 91 FGELSVLENVLIARhlhvpynmmhaifrLGKFYRG----EKEMRDEAYELLKIMNL-AHKAEEKAKNLPYGEQRRLEIAR 165
Cdd:NF040905 352 NLIDDIKRNITLAN--------------LGKVSRRgvidENEEIKVAEEYRKKMNIkTPSVFQKVGNLSGGNQQKVVLSK 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 166 ALATHPSLLLLDEPAAGMNPRETTELMELIDFI--RGKfnmTILLIEHDMHLVMNICERIYVLDYG-----VNIAHGTPE 238
Cdd:NF040905 418 WLFTDPDVLILDEPTRGIDVGAKYEIYTIINELaaEGK---GVIVISSELPELLGMCDRIYVMNEGritgeLPREEASQE 494
|
..
gi 694165643 239 EI 240
Cdd:NF040905 495 RI 496
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
156-243 |
1.67e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 39.62 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 156 GEQRRLEIARALA---THPSLLLLDEPAAGMNPRETTELME----LIDfiRGkfNmTILLIEHDMHLvmnicerI----Y 224
Cdd:COG0178 830 GEAQRVKLASELSkrsTGKTLYILDEPTTGLHFHDIRKLLEvlhrLVD--KG--N-TVVVIEHNLDV-------IktadW 897
|
90 100
....*....|....*....|....*..
gi 694165643 225 VLDYGVN--------IAHGTPEEIKNN 243
Cdd:COG0178 898 IIDLGPEggdgggeiVAEGTPEEVAKV 924
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
18-252 |
3.52e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 38.06 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 18 KAVQDLNLTLNEgDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDII----FKGESIVGLKPYQIAAKgITRTFQNI-RLFG 92
Cdd:COG3593 12 RSIKDLSIELSD-DLTVLVGENNSGKSSILEALRLLLGPSSSRKFdeedFYLGDDPDLPEIEIELT-FGSLLSRLlRLLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 93 ELSVLENVLIA-RHLHVPYN-----MMHAIFRLGKFYRGEKEMR-----DEAYELLKIMNL--AHKAEEKAKNLPYGEQR 159
Cdd:COG3593 90 KEEDKEELEEAlEELNEELKealkaLNELLSEYLKELLDGLDLElelslDELEDLLKSLSLriEDGKELPLDRLGSGFQR 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 160 RLEIA--RALATH-----PSLLLLDEPAAGMNPRettELMELIDFIR--GKFNMTILLIEHDMHLVMNIC-ERIYVLDYG 229
Cdd:COG3593 170 LILLAllSALAELkrapaNPILLIEEPEAHLHPQ---AQRRLLKLLKelSEKPNQVIITTHSPHLLSEVPlENIRRLRRD 246
|
250 260
....*....|....*....|....*
gi 694165643 230 VNIAHGT--PEEIKNNSRVIEAYLG 252
Cdd:COG3593 247 SGGTTSTklIDLDDEDLRKLLRYLG 271
|
|
| RecF |
COG1195 |
Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; |
21-59 |
6.54e-03 |
|
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
Pssm-ID: 440808 [Multi-domain] Cd Length: 352 Bit Score: 37.44 E-value: 6.54e-03
10 20 30
....*....|....*....|....*....|....*....
gi 694165643 21 QDLNLTLNEGdLVGLIGPNGAGKTtvfNLLTGIYLPTTG 59
Cdd:COG1195 14 ESLELEFSPG-INVLVGPNGQGKT---NLLEAIYLLATG 48
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
148-236 |
7.71e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 37.50 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 148 EKAKNLPYGEQRRLEIARAL---ATHPSLLLLDEPAAGMNPRETTELMELIDFIRGKfNMTILLIEHDMHLVMNIceriy 224
Cdd:PRK00635 1695 QNLSSLSLSEKIAIKIAKFLylpPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLKQA----- 1768
|
90
....*....|..
gi 694165643 225 vlDYGVNIAHGT 236
Cdd:PRK00635 1769 --DYLIEMGPGS 1778
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
12-47 |
7.71e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.22 E-value: 7.71e-03
10 20 30
....*....|....*....|....*....|....*.
gi 694165643 12 ISFGGLKAVQDLNLTLneGDLVGLIGPNGAGKTTVF 47
Cdd:COG4637 5 IRIKNFKSLRDLELPL--GPLTVLIGANGSGKSNLL 38
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
148-247 |
8.55e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 37.45 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 694165643 148 EKAKNLPYGEQRRLEIARALATHPS-LLLLDEPAAGMNPRETTELMELIdfiRGKF-NMTILLIEHDMHLVMNiCERIYV 225
Cdd:PTZ00243 1441 EGGSNYSVGQRQLMCMARALLKKGSgFILMDEATANIDPALDRQIQATV---MSAFsAYTVITIAHRLHTVAQ-YDKIIV 1516
|
90 100
....*....|....*....|..
gi 694165643 226 LDYGVNIAHGTPEEIKNNSRVI 247
Cdd:PTZ00243 1517 MDHGAVAEMGSPRELVMNRQSI 1538
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-63 |
9.56e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 35.81 E-value: 9.56e-03
10 20 30
....*....|....*....|....*....|....
gi 694165643 30 GDLVGLIGPNGAGKTTVFNLLTGIYLPTTGDIIF 63
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35
|
|
| |
