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Conserved domains on  [gi|691199676|gb|AIR77451|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Chiasmocleis sp. JFT-2014]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31790
NADH dehydrogenase subunit 2; Provisional
 4-260 1.19e-89

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00070:

Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 269.10  E-value: 1.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00070  90 QTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329

                        250
                 ....*....|....*..
gi 691199676 244 LLSITILPMTSTIMILL 260
Cdd:MTH00070 330 ILSLMLLPITPTILNLF 346
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-260 1.19e-89

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 269.10  E-value: 1.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00070  90 QTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329

                        250
                 ....*....|....*..
gi 691199676 244 LLSITILPMTSTIMILL 260
Cdd:MTH00070 330 ILSLMLLPITPTILNLF 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-131 1.29e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 71.96  E-value: 1.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676    2 WSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLIL-STWQKIAP-----MSLLIQISQTTNMTLITTIGIAS 75
Cdd:pfam00361  78 SSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIIS 157

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   76 VLVGGWGGINQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFL 131
Cdd:pfam00361 158 MLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFL 217
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-136 5.33e-13

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.22  E-value: 5.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-------TLITTIGIASVLVGGWGGI 84
Cdd:COG1007  209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqLLLAVLAVLSMTVGNLAAL 288

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676  85 NQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:COG1007  289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLL 344
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-257 1.85e-10

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 60.35  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQT-------TNMTLITTIGIASVLVGGWGGINQ 86
Cdd:TIGR01770 211 VGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFLSMLIGNFGALAQ 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   87 TQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTMNVTK------ISQISTAWPKTPTLTT 156
Cdd:TIGR01770 291 KKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILAI 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  157 LSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLtyTMSMTMAPNLTSSQTTWRSKlNKS 236
Cdd:TIGR01770 371 LILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFDKPERRIPSNPQSK-AQS 447

                         250       260
                  ....*....|....*....|.
gi 691199676  237 PVVALTNLLSITILPMTSTIM 257
Cdd:TIGR01770 448 LLLSISALFILFLGLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-260 1.19e-89

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 269.10  E-value: 1.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00070  90 QTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00070 170 LNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00070 250 SLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTI 329

                        250
                 ....*....|....*..
gi 691199676 244 LLSITILPMTSTIMILL 260
Cdd:MTH00070 330 ILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-260 7.43e-80

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 243.94  E-value: 7.43e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQIsQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00135  90 SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLTSTLVGGWGG 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00135 169 LNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILL 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPV-VALT 242
Cdd:MTH00135 249 SLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAIS 328

                        250
                 ....*....|....*...
gi 691199676 243 NLLSITILPMTSTIMILL 260
Cdd:MTH00135 329 TTATLMLLPLTPAILALL 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 4-257 1.45e-71

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 222.78  E-value: 1.45e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00112  90 TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00112 170 LNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTN 243
Cdd:MTH00112 250 SLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLT 329

                        250
                 ....*....|....
gi 691199676 244 LLSITILPMTSTIM 257
Cdd:MTH00112 330 TLSTLLLPLSPMIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 4-259 1.18e-66

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 210.47  E-value: 1.18e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:MTH00105  90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00105 170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWR-SKLNKSPVVALT 242
Cdd:MTH00105 250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENTKPMTLLPTL 329

                        250
                 ....*....|....*..
gi 691199676 243 NLLSITILPMTSTIMIL 259
Cdd:MTH00105 330 IILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 5-260 4.38e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 175.54  E-value: 4.38e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   5 STLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:MTH00200  91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  85 NQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLLS 164
Cdd:MTH00200 171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 165 LGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTNL 244
Cdd:MTH00200 251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLL 330

                        250
                 ....*....|....*.
gi 691199676 245 LSITILPMTSTIMILL 260
Cdd:MTH00200 331 LSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 5-247 5.04e-51

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 170.11  E-value: 5.04e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   5 STLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  85 NQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLLS 164
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 165 LGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTWRSKLNKSPVVALTNL 244
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330


                 ...
gi 691199676 245 LSI 247
Cdd:MTH00041 331 LSS 333
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-259 1.79e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 107.99  E-value: 1.79e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   1 IWSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLliqISQTTNMTLITTIGIASVLVGG 80
Cdd:MTH00160  82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIILSAIIGA 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  81 WGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSML 160
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 161 SLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMSMTMAPNLTSSQTTwrSKLNKSPVVA 240
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNKFSLILN 316

                        250
                 ....*....|....*....
gi 691199676 241 LTNLLSITILPMTSTIMIL 259
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-248 5.39e-27

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 106.40  E-value: 5.39e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   2 WSTSTLSSIP----LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITTIGIASVL 77
Cdd:MTH00011  80 WSFPSLLKNItalmLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSAL 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  78 VGGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTL 157
Cdd:MTH00011 160 AGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMS 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676 158 SMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTmSMTMAPNLTSSQTTWRSKLNKSP 237
Cdd:MTH00011 240 LFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLKSAPYEPKTKIL 318

                        250
                 ....*....|.
gi 691199676 238 VVALTNLLSIT 248
Cdd:MTH00011 319 ISMCTLSLGLI 329
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-146 6.05e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 100.73  E-value: 6.05e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   3 STSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-TLITTIGIASVLVGGW 81
Cdd:MTH00144  81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSI 160

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 691199676  82 GGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQIST 146
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGS 225
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-213 1.20e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 100.13  E-value: 1.20e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   4 TSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITtiGIASVLVGGWGG 83
Cdd:MTH00197  77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLIC--SVLSSLIGGIGG 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYIMMTSALFLTLMTMNVTKISQISTAWPKTPTLTTLSMLSLL 163
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 691199676 164 SLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYT 213
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK 284
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-140 2.06e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 78.13  E-value: 2.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  10 IPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLITtiGIASVLVGGWGGINQTQL 89
Cdd:MTH00199 194 ILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKI 271

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 691199676  90 RKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTMNVTK 140
Cdd:MTH00199 272 KRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTK 326
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 8-140 1.11e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 75.45  E-value: 1.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   8 SSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLIttIGIASVLVGGWGGINQT 87
Cdd:MTH00196  97 GYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GGLFSLFVGAIGALNQT 174

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 691199676  88 QLRKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTMNVTK 140
Cdd:MTH00196 175 KIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYK 231
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 2-131 1.29e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 71.96  E-value: 1.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676    2 WSTSTLSSIPLTIAICMKLGLAPLHFWMPEVLQGVPLMTGLIL-STWQKIAP-----MSLLIQISQTTNMTLITTIGIAS 75
Cdd:pfam00361  78 SSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGyglirRSLLYLPSSPFIQQILLILAIIS 157

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   76 VLVGGWGGINQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFL 131
Cdd:pfam00361 158 MLLGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFL 217
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
12-136 3.59e-13

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 68.69  E-value: 3.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQI-------SQTTNMTLITTIGIASVLVGGWGGI 84
Cdd:PRK05777 210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggLSEDWQQVLAIIAIASMLVGNLAAL 289

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676  85 NQTQLRKIMAFSSIGHLGWMLIILKMNP----SVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:PRK05777 290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTaegySAVLFYLLAYLFMTLGAFGVISLL 345
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 12-136 5.33e-13

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 68.22  E-value: 5.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNM-------TLITTIGIASVLVGGWGGI 84
Cdd:COG1007  209 VLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPglaadwqLLLAVLAVLSMTVGNLAAL 288

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 691199676  85 NQTQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTM 136
Cdd:COG1007  289 AQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILLL 344
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 12-106 3.24e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 66.04  E-value: 3.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQTTNMTLitTIGIASVLVGGWGGINQTQLRK 91
Cdd:MTH00198 305 ITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLL--SVAIISLVVGAFGALNQTRIKR 382

                         90
                 ....*....|....*
gi 691199676  92 IMAFSSIGHLGWMLI 106
Cdd:MTH00198 383 LLAYSGIGHIGFILI 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-257 1.85e-10

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 60.35  E-value: 1.85e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQISQT-------TNMTLITTIGIASVLVGGWGGINQ 86
Cdd:TIGR01770 211 VGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYilfgfseAWQIFLAIIAFLSMLIGNFGALAQ 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   87 TQLRKIMAFSSIGHLGWMLIIL----KMNPSVTLFNFTIYIMMTSALFLTLMTMNVTK------ISQISTAWPKTPTLTT 156
Cdd:TIGR01770 291 KKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewieyISDFAGLFKTNPILAI 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  157 LSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLtyTMSMTMAPNLTSSQTTWRSKlNKS 236
Cdd:TIGR01770 371 LILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFDKPERRIPSNPQSK-AQS 447

                         250       260
                  ....*....|....*....|.
gi 691199676  237 PVVALTNLLSITILPMTSTIM 257
Cdd:TIGR01770 448 LLLSISALFILFLGLFPSLIL 468
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
3-106 1.50e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   3 STSTLSSIPLTIAICMKLGLAPLHFWMPE-----------VLQGVPLMTG----------LILSTWQKIAPMslliqisq 61
Cdd:PRK06473 202 STQLLLLAPILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGVLLKLGtygllrfgvgLFPEAWVYLAPW-------- 273

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 691199676  62 ttnmtlITTIGIASVLVGGWGGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK06473 274 ------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 12-215 3.04e-04

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 41.67  E-value: 3.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPE-----------VLQGVPLMTGL--ILSTWQKIAPMSLLIQISqttnmTLITTIGIASVLV 78
Cdd:COG0651  211 LLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLV 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  79 GGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLFNFTIYI----MMTSALFLT----LMTMNVTKISQISTAWPK 150
Cdd:COG0651  286 GALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKR 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 691199676 151 TPTLTTLSMLSLLSLGGLPPLSGFAPKLMTTLELTKQNALISAGTILLLSLLALFFYIRLTYTMS 215
Cdd:COG0651  366 MPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 6-117 7.15e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.51  E-value: 7.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   6 TLSSIPLTIAICMKLGLAPLHFWMPEVLQGVP-----LMTGLILST-WQKIAPMSLLIQISQT--TNMTLITTIGIASVL 77
Cdd:PRK08676 206 GASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLNIgIYGILRLSALLRQSGAaeQFSNVLIGLGIFSIA 285

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 691199676  78 VGGWGGINQTQLRKIMAFSSIGHLGWMLIILKMNPSVTLF 117
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALF 325
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 25-132 1.72e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  25 LHFWMPEVLQGVPLMTGLILSTWQKIAPMSLLIQ---ISQTTNMTL--ITTIGIASVLVGGWGGINQTQLRKIMAFSSIG 99
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRsfpLFEKAPLTLliITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 691199676 100 HLGWMLIILKMNPS--VTLFNFTIYIMMTSALFLT 132
Cdd:MTH00032 324 QLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLS 358
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 14-112 1.82e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.15  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676   14 IAICMKLGLAPLHFWMPEVLQGVPLMTGLILS-TWQKIAP-------MSLLIQISQTTnMTLITTIGIASVLVGGWGGIN 85
Cdd:TIGR01972 211 IAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTygflrfnLPLFPDASLYF-APVLAALGVIAIIYGALIALA 289

                          90       100
                  ....*....|....*....|....*...
gi 691199676   86 QTQLRKIMAFSSIGHLGWMLI-ILKMNP 112
Cdd:TIGR01972 290 QTDIKRLIAYSSISHMGFVLLgIFSFNE 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 14-106 4.43e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.14  E-value: 4.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  14 IAICMKLGLAPLHFWMPEVLQ-----GVPLMTGLILstwqKIA-------PMSLLIQISQTtNMTLITTIGIASVLVGGW 81
Cdd:COG1008  217 IAFAVKVPMFPFHTWLPDAHVeaptaGSVLLAGVLL----KMGgygllrfALPLFPEASAY-FAPLLAALGVIGIIYGAL 291

                         90       100
                 ....*....|....*....|....*
gi 691199676  82 GGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:COG1008  292 VALAQTDLKRLIAYSSVSHMGFVLL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 24-108 5.12e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 37.82  E-value: 5.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  24 PLHFWMPE-----------------VLQGVPLmtglilstwqkIAPMSLLIQISQTTnMTLITTIGIASVLVGGWGGINQ 86
Cdd:COG1009  229 PLHFWLPDamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQ 296

                         90       100
                 ....*....|....*....|..
gi 691199676  87 TQLRKIMAFSSIGHLGWMLIIL 108
Cdd:COG1009  297 TDIKRVLAYSTVSQLGYMFLAL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 205-254 6.41e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 34.16  E-value: 6.41e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 691199676  205 FFYIRLTYTMSMTMAPNLTSSQTTWRSKLNK-SPVVALTNLLSITILPMTS 254
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-106 6.93e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.38  E-value: 6.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMPEVLQGVPL-MTGLILSTWQ----KIAPMSLLI---QISQTTNMTLITTIGIASVLVGGWGG 83
Cdd:PRK08376 226 FIAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMA 305

                         90       100
                 ....*....|....*....|...
gi 691199676  84 INQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMLL 328
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
12-106 8.48e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.38  E-value: 8.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691199676  12 LTIAICMKLGLAPLHFWMP----EVLQGVPLMTGLILS-----------------TWQKIAPMslliqisqttnmtlITT 70
Cdd:PRK07363 211 LLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAklgtygllrfglqlfpqTWSLVAPG--------------LAI 276

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 691199676  71 IGIASVLVGGWGGINQTQLRKIMAFSSIGHLGWMLI 106
Cdd:PRK07363 277 IGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILV 312
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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