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Conserved domains on  [gi|767439471|gb|AIP66987|]
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hypothetical protein DR62_5169 [Burkholderia thailandensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TssQ_fam super family cl41621
TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ ...
 14-114 9.12e-49

TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ (BB0812) from Bordetella bronchiseptica, is a lipoprotein, and possibly all other family members are as well. TssQ is encoded within a T6SS locus but its function remains unknown.


The actual alignment was detected with superfamily member NF038027:

Pssm-ID: 468318  Cd Length: 100  Bit Score: 150.95  E-value: 9.12e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767439471  14 PTPSVAQATLDSARAAYDAGDYRRAIALLGsRAHEIDGADVNTQVAAHKLLAFSYCLTRRITQCRAEFSRILDLNPRFDL 93
Cdd:NF038027   1 PASPAAEQALAEGRQAYDAGDYGAAIRRLG-RSSELQTAPPATRVEALKLLAFSYCVSGRTKQCRDSFRRALALDPDFDL 79

                         90       100
                 ....*....|....*....|.
gi 767439471  94 SPAEKGHPIWGPAFEYARRRH 114
Cdd:NF038027  80 APAEAGHPIWGPVFEKAKAAA 100
 
Name Accession Description Interval E-value
TssQ_fam NF038027
TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ ...
 14-114 9.12e-49

TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ (BB0812) from Bordetella bronchiseptica, is a lipoprotein, and possibly all other family members are as well. TssQ is encoded within a T6SS locus but its function remains unknown.


Pssm-ID: 468318  Cd Length: 100  Bit Score: 150.95  E-value: 9.12e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767439471  14 PTPSVAQATLDSARAAYDAGDYRRAIALLGsRAHEIDGADVNTQVAAHKLLAFSYCLTRRITQCRAEFSRILDLNPRFDL 93
Cdd:NF038027   1 PASPAAEQALAEGRQAYDAGDYGAAIRRLG-RSSELQTAPPATRVEALKLLAFSYCVSGRTKQCRDSFRRALALDPDFDL 79

                         90       100
                 ....*....|....*....|.
gi 767439471  94 SPAEKGHPIWGPAFEYARRRH 114
Cdd:NF038027  80 APAEAGHPIWGPVFEKAKAAA 100
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 4-90 2.64e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 35.63  E-value: 2.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767439471   4 MSGCGTGTISPTPSVAQATLDSARAAYDAGDYRRAIALLgsraHEIDGADVNTQVAAHKLL--AFSYCLTRRITQCRAEF 81
Cdd:COG4105   17 LAGCSSFKKALKSWDAEELYEEAKEALEKGDYEKAIKLF----EELEPRYPGSPYAEQAQLmlAYAYYKQGDYEEAIAAA 92


                 ....*....
gi 767439471  82 SRILDLNPR 90
Cdd:COG4105   93 DRFIKLYPN 101
 
Name Accession Description Interval E-value
TssQ_fam NF038027
TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ ...
 14-114 9.12e-49

TssQ family T6SS-associated lipoprotein; The founding member of this protein family, TssQ (BB0812) from Bordetella bronchiseptica, is a lipoprotein, and possibly all other family members are as well. TssQ is encoded within a T6SS locus but its function remains unknown.


Pssm-ID: 468318  Cd Length: 100  Bit Score: 150.95  E-value: 9.12e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767439471  14 PTPSVAQATLDSARAAYDAGDYRRAIALLGsRAHEIDGADVNTQVAAHKLLAFSYCLTRRITQCRAEFSRILDLNPRFDL 93
Cdd:NF038027   1 PASPAAEQALAEGRQAYDAGDYGAAIRRLG-RSSELQTAPPATRVEALKLLAFSYCVSGRTKQCRDSFRRALALDPDFDL 79

                         90       100
                 ....*....|....*....|.
gi 767439471  94 SPAEKGHPIWGPAFEYARRRH 114
Cdd:NF038027  80 APAEAGHPIWGPVFEKAKAAA 100
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 4-90 2.64e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 35.63  E-value: 2.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767439471   4 MSGCGTGTISPTPSVAQATLDSARAAYDAGDYRRAIALLgsraHEIDGADVNTQVAAHKLL--AFSYCLTRRITQCRAEF 81
Cdd:COG4105   17 LAGCSSFKKALKSWDAEELYEEAKEALEKGDYEKAIKLF----EELEPRYPGSPYAEQAQLmlAYAYYKQGDYEEAIAAA 92


                 ....*....
gi 767439471  82 SRILDLNPR 90
Cdd:COG4105   93 DRFIKLYPN 101
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 15-91 9.50e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 34.32  E-value: 9.50e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767439471  15 TPSVAQATLDSARAAYDAGDYRRAIALLgSRAHEIDGADvntqVAAHKLLAFSYCLTRRITQCRAEFSRILDLNPRF 91
Cdd:COG2956  140 GPENAHAYCELAELYLEQGDYDEAIEAL-EKALKLDPDC----ARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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