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Conserved domains on  [gi|663500674|gb|AIE91565|]
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NADH-quinone oxidoreductase subunit C [uncultured marine group II/III euryarchaeote AD1000_12_E11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 49-204 1.97e-28

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 104.91  E-value: 1.97e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  49 SPESWRTLAEKLHSEHGVDYCSMVTGVHWPEgdEDKKWEIVYHLMRtgirnppiedglvqpvIVDPSTVRgsgtpleleL 128
Cdd:COG0852   34 PPEDLVDVARFLRDDLGFDHLSDLTGVDYPE--RGDRFEVVYHLLS----------------LTHNRRLR---------L 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 663500674 129 HVYLPETrTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQKQHHLRYHDFQDMYDD 204
Cdd:COG0852   87 KVFVPRD-DPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRIL----LPEDWegHPLRKDFPLEGYVEVRYDEE 159
 
Name Accession Description Interval E-value
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 49-204 1.97e-28

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 104.91  E-value: 1.97e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  49 SPESWRTLAEKLHSEHGVDYCSMVTGVHWPEgdEDKKWEIVYHLMRtgirnppiedglvqpvIVDPSTVRgsgtpleleL 128
Cdd:COG0852   34 PPEDLVDVARFLRDDLGFDHLSDLTGVDYPE--RGDRFEVVYHLLS----------------LTHNRRLR---------L 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 663500674 129 HVYLPETrTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQKQHHLRYHDFQDMYDD 204
Cdd:COG0852   87 KVFVPRD-DPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRIL----LPEDWegHPLRKDFPLEGYVEVRYDEE 159
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
49-196 4.03e-25

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 94.85  E-value: 4.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674   49 SPESWRTLAEKLHSEH-GVDYCSMVTGVHWPEGDEdkkWEIVYHLMRTGIrnppiedglvqpvivdpstvrgsgtPLELE 127
Cdd:pfam00329   4 DPEDLLEVARFLRDDElGFDHLSDLTGVDYPEEGR---FEVVYHLLSITH-------------------------NVRVR 55

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663500674  128 LHVYLPETrtPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQKQHHLRYH 196
Cdd:pfam00329  56 VKVPLEDD--PVVPSVTDIWPGANWYEREVYDMFGIVFEGHPDLRRIL----LPEDWegHPLRKDFPLTGY 120
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 50-189 2.17e-18

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 79.18  E-value: 2.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  50 PESWRTLAEKL--HSEHGVDYCSMVTGVHWPEgdEDKKWEIVYHLMrtgirnppiedGLVQPVIvdpstvrgsgtpleLE 127
Cdd:PRK06074  35 AEKILEVLTFLrdDPELRFEQLIDLTGVDYPE--RGKRFEVVYHLL-----------SYKHNVR--------------LR 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663500674 128 LHVYLPETrtPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQK 189
Cdd:PRK06074  88 VKVRAPED--PVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRIL----TDYGFegHPLRK 145
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 65-189 6.25e-17

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 73.80  E-value: 6.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674   65 GVDYCSMVTGVHWPEgdeDKKWEIVYHLMRtgirnppiedglvqpvIVDPSTVRgsgtpleleLHVYLPETrtPSVDSVQ 144
Cdd:TIGR01961  23 GFELLTDVSGVDYPK---EKRFEVVYHLLS----------------IKKNRRIR---------LKVRLSED--DPVPSLT 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 663500674  145 DIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQK 189
Cdd:TIGR01961  73 SVFPTANWYERETYDMYGIVFDGHPDLRRIL----MPDDFegHPLRK 115
 
Name Accession Description Interval E-value
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 49-204 1.97e-28

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 104.91  E-value: 1.97e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  49 SPESWRTLAEKLHSEHGVDYCSMVTGVHWPEgdEDKKWEIVYHLMRtgirnppiedglvqpvIVDPSTVRgsgtpleleL 128
Cdd:COG0852   34 PPEDLVDVARFLRDDLGFDHLSDLTGVDYPE--RGDRFEVVYHLLS----------------LTHNRRLR---------L 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 663500674 129 HVYLPETrTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQKQHHLRYHDFQDMYDD 204
Cdd:COG0852   87 KVFVPRD-DPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRIL----LPEDWegHPLRKDFPLEGYVEVRYDEE 159
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
49-196 4.03e-25

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 94.85  E-value: 4.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674   49 SPESWRTLAEKLHSEH-GVDYCSMVTGVHWPEGDEdkkWEIVYHLMRTGIrnppiedglvqpvivdpstvrgsgtPLELE 127
Cdd:pfam00329   4 DPEDLLEVARFLRDDElGFDHLSDLTGVDYPEEGR---FEVVYHLLSITH-------------------------NVRVR 55

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663500674  128 LHVYLPETrtPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQKQHHLRYH 196
Cdd:pfam00329  56 VKVPLEDD--PVVPSVTDIWPGANWYEREVYDMFGIVFEGHPDLRRIL----LPEDWegHPLRKDFPLTGY 120
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 50-189 2.17e-18

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 79.18  E-value: 2.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  50 PESWRTLAEKL--HSEHGVDYCSMVTGVHWPEgdEDKKWEIVYHLMrtgirnppiedGLVQPVIvdpstvrgsgtpleLE 127
Cdd:PRK06074  35 AEKILEVLTFLrdDPELRFEQLIDLTGVDYPE--RGKRFEVVYHLL-----------SYKHNVR--------------LR 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663500674 128 LHVYLPETrtPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQK 189
Cdd:PRK06074  88 VKVRAPED--PVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRIL----TDYGFegHPLRK 145
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 65-189 6.25e-17

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 73.80  E-value: 6.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674   65 GVDYCSMVTGVHWPEgdeDKKWEIVYHLMRtgirnppiedglvqpvIVDPSTVRgsgtpleleLHVYLPETrtPSVDSVQ 144
Cdd:TIGR01961  23 GFELLTDVSGVDYPK---EKRFEVVYHLLS----------------IKKNRRIR---------LKVRLSED--DPVPSLT 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 663500674  145 DIWVGADWNEKETWDLVGIDFDGHQGMRRVLqpheTPKGF--HPLQK 189
Cdd:TIGR01961  73 SVFPTANWYERETYDMYGIVFDGHPDLRRIL----MPDDFegHPLRK 115
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 128-194 2.41e-13

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 68.02  E-value: 2.41e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 663500674 128 LHVYLPETrTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLQPhETPKGfHPLQKQHHLR 194
Cdd:PRK11742  89 LKVALSEN-DLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMP-PTWEG-HPLRKDYPAR 152
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
15-189 3.93e-13

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 67.31  E-value: 3.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  15 DKLAAAISEIDGVEAEVA---ERVSGTNPRPVVlgnsSPESWRTLAE--KLHSEHGVDYCSMVTGVhwpegDEDKKWEIV 89
Cdd:PRK07735 279 NKYVEVIKEKLGEDVLEDsyiNKLSKDVPTLVV----EPEKYYEVAEllRFHEQLAFDYLSELHGT-----DFVTHMEVY 349

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  90 YHLMRTGIRnppiedglvQPVIVDPSTVRgsgtplelelhvylpetRTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQ 169
Cdd:PRK07735 350 VHLYSYGKR---------QSVAVKVKLDR-----------------EAPQVESVTPLWKGANWPEREAYDLLGIVFKGHP 403

                        170       180
                 ....*....|....*....|
gi 663500674 170 GMRRVLQPhETPKGfHPLQK 189
Cdd:PRK07735 404 NLSRILLP-DDWVG-HPLRK 421
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
49-189 1.31e-12

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 66.13  E-value: 1.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  49 SPESWRTLAEKLHSEHGVDYCSMVtGVhwPEGDEDKKWEIVYHLmrtgirnppiedglvqpvivdpsTVRGSGTPLELel 128
Cdd:COG3262   31 DREDLPELAEFLAEGGGGRLAALW-GN--DERELGGGFAVYYVF-----------------------ALEGEGALVTL-- 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663500674 129 HVYLPETRtPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLQPHETPKGFHPLQK 189
Cdd:COG3262   83 KVSVPKDD-PVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWPEGIYPLRK 142
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 69-189 3.17e-11

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 60.77  E-value: 3.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663500674  69 CSMVTGVHWPEgDEDKKWEIVYHLMRTGIRNppiedglvqpvivdpstvrgsgtplELELHVYLPETrTPSVDSVQDIWV 148
Cdd:PRK07785 118 CLGVSGVHYPH-DTGRELHAVYHLTSITHNR-------------------------RIRLEVAVPDA-DPHIPSLVSVYP 170

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 663500674 149 GADWNEKETWDLVGIDFDGHQGMRRVLQPHETPKgfHPLQK 189
Cdd:PRK07785 171 TNDWHERETYDFFGIVFDGHPALTRIEMPDDWVG--HPQRK 209
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
134-194 6.06e-11

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 61.33  E-value: 6.06e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663500674 134 ETRTPSVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLQPHETPKgfHPLQKQHHLR 194
Cdd:PRK13292 315 RGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEG--HPLRKEHPFR 373
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
139-203 6.16e-08

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 51.60  E-value: 6.16e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663500674 139 SVDSVQDIWVGADWNEKETWDLVGIDFDGHQGMRRVLQPHETPKgfHPLQKQHHLRYHDFQDMYD 203
Cdd:PRK08491 124 ALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVG--HPLLKSYPLKGDEFAQWYE 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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