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Conserved domains on  [gi|663075006|gb|AIE87161|]
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hypothetical protein OP10G_3793 [Fimbriimonas ginsengisoli Gsoil 348]

Protein Classification

zf-TFIIB domain-containing protein( domain architecture ID 10602987)

zf-TFIIB domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 59-113 2.02e-10

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


:

Pssm-ID: 443022  Cd Length: 59  Bit Score: 53.13  E-value: 2.02e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 663075006  59 RPRACPSCGTTMdkfRYMYSSKLMLDECERCGGIWVQDGELRHMRQVLQEQGLQR 113
Cdd:COG3809    1 EAMLCPKCGAPM---RVVERSGVEIDYCPSCGGVWLDRGELEKLLEAEEAGAARR 52
zf-TFIIB pfam13453
Transcription factor zinc-finger;
1-34 2.94e-06

Transcription factor zinc-finger;


:

Pssm-ID: 433221  Cd Length: 41  Bit Score: 41.90  E-value: 2.94e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 663075006    1 MPLEAREFQGVTIDACSKCAGIFFDEGEVGRIKA 34
Cdd:pfam13453   7 AELEEVERDGVEIDYCPQCRGIWLDRGELEKLLE 40
 
Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 59-113 2.02e-10

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 53.13  E-value: 2.02e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 663075006  59 RPRACPSCGTTMdkfRYMYSSKLMLDECERCGGIWVQDGELRHMRQVLQEQGLQR 113
Cdd:COG3809    1 EAMLCPKCGAPM---RVVERSGVEIDYCPSCGGVWLDRGELEKLLEAEEAGAARR 52
zf-TFIIB pfam13453
Transcription factor zinc-finger;
1-34 2.94e-06

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 41.90  E-value: 2.94e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 663075006    1 MPLEAREFQGVTIDACSKCAGIFFDEGEVGRIKA 34
Cdd:pfam13453   7 AELEEVERDGVEIDYCPQCRGIWLDRGELEKLLE 40
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 1-38 1.61e-05

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 40.42  E-value: 1.61e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 663075006   1 MPLEAREFQGVTIDACSKCAGIFFDEGEVGRIKAQGLA 38
Cdd:COG3809   10 APMRVVERSGVEIDYCPSCGGVWLDRGELEKLLEAEEA 47
zf-TFIIB pfam13453
Transcription factor zinc-finger;
63-101 3.44e-05

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 38.82  E-value: 3.44e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 663075006   63 CPSCGTTMdkfRYMYSSKLMLDECERCGGIWVQDGELRH 101
Cdd:pfam13453   2 CPKCGAEL---EEVERDGVEIDYCPQCRGIWLDRGELEK 37
 
Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 59-113 2.02e-10

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 53.13  E-value: 2.02e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 663075006  59 RPRACPSCGTTMdkfRYMYSSKLMLDECERCGGIWVQDGELRHMRQVLQEQGLQR 113
Cdd:COG3809    1 EAMLCPKCGAPM---RVVERSGVEIDYCPSCGGVWLDRGELEKLLEAEEAGAARR 52
zf-TFIIB pfam13453
Transcription factor zinc-finger;
1-34 2.94e-06

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 41.90  E-value: 2.94e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 663075006    1 MPLEAREFQGVTIDACSKCAGIFFDEGEVGRIKA 34
Cdd:pfam13453   7 AELEEVERDGVEIDYCPQCRGIWLDRGELEKLLE 40
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 1-38 1.61e-05

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 40.42  E-value: 1.61e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 663075006   1 MPLEAREFQGVTIDACSKCAGIFFDEGEVGRIKAQGLA 38
Cdd:COG3809   10 APMRVVERSGVEIDYCPSCGGVWLDRGELEKLLEAEEA 47
zf-TFIIB pfam13453
Transcription factor zinc-finger;
63-101 3.44e-05

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 38.82  E-value: 3.44e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 663075006   63 CPSCGTTMdkfRYMYSSKLMLDECERCGGIWVQDGELRH 101
Cdd:pfam13453   2 CPKCGAEL---EEVERDGVEIDYCPQCRGIWLDRGELEK 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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